RchiOBHm_Chr3g0497191

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
48859166 .. 48862081
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1818 bp
ATGGGTAGAAATTTAGCCCCAGTACTACAGAGAGAATTGGAGAATCTTCATAAAGATGCTGATAGTCGTAGATCGGCAATGAAAGCACTGAAATCCTATGTGAAAGATTTGGACTCCAAGGCAATCCCTATGTTTCTTGCCCAAGTTTCCCAGTCCAAAGACTCTGGTCCTTTGAATGGGGAATGCACCATTTCGCTCTATGAAGTTCTTGCTCGTGTTCATGGTGTCAAAATCGTCCCTCTCATAAACAGCATCATGGCAACCATAATCAAGACACTAACTTCGAGTGCAGGGTCTTTCCCTCTTCAACAAGCATGCTCAAAGGTGGTTCCCGCCATTGCTAGATATGGGATTGACCCTACCACCCCTGAAGACAAGAAAAGGCATATCATTCATTCACTTTGCAATCCTCTCGCGGATTCCCTCTTGGGTTCTCAAGACAGCTTGACTTCTGGAGCTGCCCTTTGCTTAAAGGCTCTTGTGGATTCGGATAATTGGCGTTTTGCTTCAGATGAGATGGTTAACAAAGTTTGTCAGAATGTTTCTGGGGCTTTGGAGGAGAAATCTACTCAGTCAAATGCACATATGGGTCTGGTCATGTCTCTTGCAAAGCGTAATGCTATAATAGTTGAACCATATGCTAGGTTGTTAATACATGCTGGACTGCAGATACTGAACAATGGTTTAATAGAGGGGAATTCTCAGAAACGCTTGGAAGCTATTCAAATGGTCAACTTCTTGATGAAATGCTTAGATCCTTGGAGCATTTTATCCGAGCTTGACTTGGTTATTGAAGAAATGGACAAGAGTCAGTCAGATCAGATGGCTTATGTAGGAGGGGCTGCCTTTGAAGCTCTGCAAACTGCAAGGAGAATAGCTGCAGATAAAGGCCCAAAACTTGAAAAGGCTCATTCAGTCACTGGCTCAAACTTTAGTAGGAAGGACCATAGCAAGAGGCGAAATTTATCTAGTGCTGGCGATCAGTCCCCTGCATCAGTGTCACCTGAGTCACAGACCCTTGATTCCTTTATAGAATATGAATCATGGGTTGAATCACCTATTGCACTGGGGCAGGTTTCTCACAACTCAAATTATGATAGTAGGAGTGTCAACAGGAAACTTTGGAGTCATGAGCGTGGAGGAGTTGATGTGTCTCTCAAGGATGGTTTGTTCTCAGGAATTTCCTACTCTAATGCACATTCAGACTCTGGGAATAATCAGTTCATGAACAACGAAGGAGAGTGCACAGAAGAATTTTCAGGTTTCCTTCAAAGAAATCCTAGAAATGGAGTATCAAGAAGTGCCACAACCAGTCCCCTGAGGTCACGAACTCCAGTTGATGTTGATAATATCATCTTCAAAACTCCAAGGAGGCTTGTTCATTCTCTTCAGGATCCATATAATGTCAACTCAGACTTCTCTGAGAAACAAACTAGAAGAGTTAGAAGTTTATCCTTGAGCGAAGATTGCAGCCCAAATGTCAGGTACAATCAAAATGGTTATTCACATGGTGCGACTTATGACCACAATGGTAGCTTATATGACGGTGGTAGTGAGCAGTTCCAAGGTGGCCCTGAATCTGTATCCTCAACAGATGGTAGCCCTAAAGATGCTGATTTGCAAGTGTTTCATGATGTGGTTCCTGAAATAAAATCAGAAATTCAAGATTCTGGCATCAGAAAACCCCTTCGCAAGGCTGCTGTAAAATTGTTCTGTGGTCTCTCTTTTGCAGTACTTGCAGTAGCTGTTCCGTTAGCTTTGATTACTGATCAAGGTCAAGGTCAAGCTCATGAAGGTTATTATCTTGTTCCAACTTAG

Protein Analysis

605

Amino Acids

66.12

Weight (kDa)

6.37

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 18 - 208 1.3e-16 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1063
AccII CGCG 1 cut(s) 416
AciI CCGC 2 cut(s) 333, 416
AclWI GGATC 3 cut(s) 749, 1388, 1401
AcsI RAATTY 6 cut(s) 10, 697, 961, 1179, 1253, 1659
AcuI CTGAAG 3 cut(s) 390, 492, 1373
AdeI CACNNNGTG 1 cut(s) 1511
AfaI GTAC 3 cut(s) 24, 1487, 1734
AfiI CCNNNNNNNGG 3 cut(s) 176, 1286, 1693
AloI GAACNNNNNNTCC 2 cut(s) 1154, 1186
Alw21I GWGCWC 1 cut(s) 1247
Alw26I GTCTC 3 cut(s) 606, 1158, 1724
Alw44I GTGCAC 1 cut(s) 1243
AlwI GGATC 3 cut(s) 749, 1388, 1401
AlwNI CAGNNNCTG 4 cut(s) 673, 920, 1208, 1745
AoxI GGCC 2 cut(s) 889, 1570
ApaLI GTGCAC 1 cut(s) 1243
ApeKI GCWGC 5 cut(s) 458, 842, 878, 1470, 1697
ApoI RAATTY 6 cut(s) 10, 697, 961, 1179, 1253, 1659
ArsI GACNNNNNNTTYG 2 cut(s) 265, 297
Asp700I GAANNNNTTC 1 cut(s) 720
AspS9I GGNCC 4 cut(s) 167, 890, 943, 1571
AsuHPI GGTGA 2 cut(s) 993, 1047
AvaII GGWCC 2 cut(s) 167, 943
AxyI CCTNAGG 1 cut(s) 1319
BaeGI GKGCMC 1 cut(s) 1247
BamHI GGATCC 1 cut(s) 1393
BauI CACGAG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 1247
BbvI GCAGC 5 cut(s) 445, 829, 865, 1482, 1684
BccI CCATC 4 cut(s) 511, 817, 1157, 1589
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciVI GTATCC 1 cut(s) 1594
BclI TGATCA 1 cut(s) 1768
BcoDI GTCTC 3 cut(s) 606, 1158, 1724
BfaI CTAG 5 cut(s) 342, 642, 969, 1281, 1434
BfmI CTRYAG 3 cut(s) 26, 665, 879
BfuAI ACCTGC 1 cut(s) 1063
BfuI GTATCC 1 cut(s) 1594
BisI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
BlsI GCNGC 5 cut(s) 460, 844, 880, 1472, 1699
BmcAI AGTACT 2 cut(s) 24, 1734
Bme18I GGWCC 2 cut(s) 167, 943
BmgT120I GGNCC 4 cut(s) 167, 890, 943, 1571
BmiI GGNNCC 3 cut(s) 330, 1395, 1641
BmrI ACTGGG 3 cut(s) 14, 145, 1076
BmsI GCATC 5 cut(s) 46, 261, 1001, 1600, 1683
BmuI ACTGGG 3 cut(s) 14, 145, 1076
BoxI GACNNNNGTC 2 cut(s) 165, 807
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 2 cut(s) 474, 1317
BpuEI CTTGAG 3 cut(s) 420, 1142, 1477
BsaI GGTCTC 1 cut(s) 1724
BsaJI CCNNGG 4 cut(s) 117, 758, 1367, 1564
BsaXI ACNNNNNCTCC 2 cut(s) 1134, 1164
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 1286, 1693
Bse1I ACTGG 6 cut(s) 20, 151, 925, 1071, 1311, 1334
Bse21I CCTNAGG 1 cut(s) 1319
Bse3DI GCAATG 2 cut(s) 84, 336
BseDI CCNNGG 4 cut(s) 117, 758, 1367, 1564
BseGI GGATG 1 cut(s) 1168
BseLI CCNNNNNNNGG 3 cut(s) 176, 1286, 1693
BseMI GCAATG 2 cut(s) 84, 336
BseMII CTCAG 7 cut(s) 584, 716, 996, 1188, 1310, 1413, 1425
BseNI ACTGG 6 cut(s) 20, 151, 925, 1071, 1311, 1334
BseRI GAGGAG 2 cut(s) 572, 1155
BseSI GKGCMC 1 cut(s) 1247
BseXI GCAGC 5 cut(s) 445, 829, 865, 1482, 1684
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 416
BshFI GGCC 2 cut(s) 891, 1572
BsiHKAI GWGCWC 1 cut(s) 1247
BslFI GGGAC 3 cut(s) 221, 970, 1299
BslI CCNNNNNNNGG 3 cut(s) 176, 1286, 1693
BsmAI GTCTC 3 cut(s) 606, 1158, 1724
BsmFI GGGAC 3 cut(s) 221, 970, 1299
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 2 cut(s) 891, 1572
Bso31I GGTCTC 1 cut(s) 1724
Bsp1286I GDGCHC 1 cut(s) 1247
Bsp143I GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
BspACI CCGC 2 cut(s) 333, 416
BspANI GGCC 2 cut(s) 891, 1572
BspCNI CTCAG 7 cut(s) 583, 715, 997, 1187, 1311, 1414, 1424
BspFNI CGCG 1 cut(s) 416
BspHI TCATGA 4 cut(s) 1129, 1224, 1630, 1789
BspLI GGNNCC 3 cut(s) 330, 1395, 1641
BspMAI CTGCAG 2 cut(s) 669, 883
BspMI ACCTGC 1 cut(s) 1063
BspPI GGATC 3 cut(s) 749, 1388, 1401
BspTNI GGTCTC 1 cut(s) 1724
BsrDI GCAATG 2 cut(s) 84, 336
BsrI ACTGG 6 cut(s) 20, 151, 925, 1071, 1311, 1334
BssECI CCNNGG 4 cut(s) 117, 758, 1367, 1564
BssMI GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 4 cut(s) 117, 758, 1367, 1564
Bst2BI CACGAG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 1547
Bst6I CTCTTC 3 cut(s) 309, 1392, 1432
BstAPI GCANNNNNTGC 1 cut(s) 1736
BstC8I GCNNGC 2 cut(s) 316, 976
BstDEI CTNAG 9 cut(s) 570, 702, 751, 1005, 1174, 1319, 1411, 1422, 1815
BstENI CCTNNNNNAGG 1 cut(s) 1691
BstF5I GGATG 1 cut(s) 1168
BstFNI CGCG 1 cut(s) 416
BstKTI GATC 6 cut(s) 74, 757, 820, 982, 1396, 1771
BstMAI GTCTC 3 cut(s) 606, 1158, 1724
BstMBI GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
BstMWI GCNNNNNNNGC 4 cut(s) 83, 851, 1467, 1736
BstNSI RCATGY 2 cut(s) 318, 659
BstPAI GACNNNNGTC 2 cut(s) 165, 807
BstSFI CTRYAG 3 cut(s) 26, 665, 879
BstSLI GKGCMC 1 cut(s) 1247
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 5 cut(s) 445, 829, 865, 1482, 1684
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 2 cut(s) 754, 1393
BstYI RGATCY 2 cut(s) 754, 1393
Bsu36I CCTNAGG 1 cut(s) 1319
BsuI GTATCC 1 cut(s) 1594
BsuRI GGCC 2 cut(s) 891, 1572
BtsCI GGATG 1 cut(s) 1168
BtsIMutI CAGTG 4 cut(s) 86, 918, 1002, 1064
BveI ACCTGC 1 cut(s) 1063
Cac8I GCNNGC 2 cut(s) 316, 976
CaiI CAGNNNCTG 4 cut(s) 673, 920, 1208, 1745
CciI TCATGA 4 cut(s) 1129, 1224, 1630, 1789
Cfr13I GGNCC 4 cut(s) 167, 890, 943, 1571
Csp6I GTAC 3 cut(s) 23, 1486, 1733
CviQI GTAC 3 cut(s) 23, 1486, 1733
DdeI CTNAG 9 cut(s) 570, 702, 751, 1005, 1174, 1319, 1411, 1422, 1815
DpnI GATC 6 cut(s) 73, 756, 819, 981, 1395, 1770
DpnII GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
DraIII CACNNNGTG 1 cut(s) 1511
Eam1104I CTCTTC 3 cut(s) 309, 1392, 1432
EarI CTCTTC 3 cut(s) 309, 1392, 1432
Eco130I CCWWGG 4 cut(s) 117, 758, 1367, 1564
Eco31I GGTCTC 1 cut(s) 1724
Eco47I GGWCC 2 cut(s) 167, 943
Eco57I CTGAAG 3 cut(s) 390, 492, 1373
Eco81I CCTNAGG 1 cut(s) 1319
EcoNI CCTNNNNNAGG 1 cut(s) 1691
EcoRI GAATTC 1 cut(s) 697
EcoT14I CCWWGG 4 cut(s) 117, 758, 1367, 1564
ErhI CCWWGG 4 cut(s) 117, 758, 1367, 1564
FaqI GGGAC 3 cut(s) 221, 970, 1299
FauI CCCGC 1 cut(s) 340
FauNDI CATATG 2 cut(s) 585, 637
FbaI TGATCA 1 cut(s) 1768
Fnu4HI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
FokI GGATG 1 cut(s) 1175
Fsp4HI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
FspBI CTAG 5 cut(s) 342, 642, 969, 1281, 1434
GluI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
GsuI CTGGAG 2 cut(s) 474, 1317
HaeIII GGCC 2 cut(s) 891, 1572
HincII GTYRAC 4 cut(s) 523, 733, 1111, 1408
HindII GTYRAC 4 cut(s) 523, 733, 1111, 1408
HpaI GTTAAC 1 cut(s) 523
HphI GGTGA 2 cut(s) 993, 1047
Hpy166II GTNNAC 5 cut(s) 523, 733, 1111, 1245, 1408
Hpy8I GTNNAC 5 cut(s) 523, 733, 1111, 1245, 1408
HpyAV CCTTC 5 cut(s) 934, 1229, 1277, 1697, 1787
HpyCH4III ACNGT 1 cut(s) 1547
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 851, 1467, 1736
HpyF3I CTNAG 9 cut(s) 570, 702, 751, 1005, 1174, 1319, 1411, 1422, 1815
Ksp22I TGATCA 1 cut(s) 1768
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
LmnI GCTCC 2 cut(s) 455, 762
Lsp1109I GCAGC 5 cut(s) 445, 829, 865, 1482, 1684
LweI GCATC 5 cut(s) 46, 261, 1001, 1600, 1683
MaeI CTAG 5 cut(s) 342, 642, 969, 1281, 1434
MaeIII GTNAC 4 cut(s) 916, 999, 1008, 1323
MalI GATC 6 cut(s) 73, 756, 819, 981, 1395, 1770
MboI GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
MboII GAAGA 9 cut(s) 38, 296, 383, 806, 1262, 1348, 1379, 1449, 1475
MflI RGATCY 2 cut(s) 754, 1393
MhlI GDGCHC 1 cut(s) 1247
MlyI GAGTC 6 cut(s) 107, 155, 817, 1016, 1135, 1199
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 4 cut(s) 470, 522, 650, 686
MslI CAYNNNNRTG 2 cut(s) 54, 1134
Mva1269I GAATGC 1 cut(s) 188
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 4 cut(s) 83, 851, 1467, 1736
NdeI CATATG 2 cut(s) 585, 637
NdeII GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
NlaIV GGNNCC 3 cut(s) 330, 1395, 1641
NmuCI GTSAC 4 cut(s) 916, 999, 1008, 1323
NspI RCATGY 2 cut(s) 318, 659
PaeI GCATGC 1 cut(s) 318
PagI TCATGA 4 cut(s) 1129, 1224, 1630, 1789
PctI GAATGC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 8 cut(s) 43, 419, 485, 1022, 1040, 1052, 1577, 1667
PkrI GCNGC 5 cut(s) 460, 844, 880, 1472, 1699
PleI GAGTC 6 cut(s) 107, 155, 816, 1015, 1134, 1199
PpsI GAGTC 6 cut(s) 107, 155, 816, 1015, 1134, 1199
PshAI GACNNNNGTC 2 cut(s) 165, 807
PspN4I GGNNCC 3 cut(s) 330, 1395, 1641
PspPI GGNCC 4 cut(s) 167, 890, 943, 1571
PstI CTGCAG 2 cut(s) 669, 883
PstNI CAGNNNCTG 4 cut(s) 673, 920, 1208, 1745
PsuI RGATCY 2 cut(s) 754, 1393
RsaI GTAC 3 cut(s) 24, 1487, 1734
RsaNI GTAC 3 cut(s) 23, 1486, 1733
RseI CAYNNNNRTG 2 cut(s) 54, 1134
SaqAI TTAA 4 cut(s) 470, 522, 650, 686
SatI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
Sau3AI GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
Sau96I GGNCC 4 cut(s) 167, 890, 943, 1571
ScaI AGTACT 2 cut(s) 24, 1734
SchI GAGTC 6 cut(s) 107, 155, 817, 1016, 1135, 1199
SduI GDGCHC 1 cut(s) 1247
SfaNI GCATC 5 cut(s) 46, 261, 1001, 1600, 1683
SfcI CTRYAG 3 cut(s) 26, 665, 879
SinI GGWCC 2 cut(s) 167, 943
SmiMI CAYNNNNRTG 2 cut(s) 54, 1134
SmlI CTYRAG 3 cut(s) 435, 1157, 1456
SmoI CTYRAG 3 cut(s) 435, 1157, 1456
SphI GCATGC 1 cut(s) 318
SsiI CCGC 2 cut(s) 333, 416
SspMI CTAG 5 cut(s) 342, 642, 969, 1281, 1434
StyI CCWWGG 4 cut(s) 117, 758, 1367, 1564
TaaI ACNGT 1 cut(s) 1547
TaqI TCGA 1 cut(s) 284
TatI WGTACW 2 cut(s) 22, 1732
TfiI GAWTC 8 cut(s) 43, 419, 485, 1022, 1040, 1052, 1577, 1667
Tru1I TTAA 4 cut(s) 470, 522, 650, 686
Tru9I TTAA 4 cut(s) 470, 522, 650, 686
TscAI CASTG 4 cut(s) 93, 925, 1002, 1071
TseFI GTSAC 4 cut(s) 916, 999, 1008, 1323
TseI GCWGC 5 cut(s) 458, 842, 878, 1470, 1697
Tsp45I GTSAC 4 cut(s) 916, 999, 1008, 1323
TspGWI ACGGA 1 cut(s) 1740
TspRI CASTG 4 cut(s) 93, 925, 1002, 1071
VneI GTGCAC 1 cut(s) 1243
VpaK11BI GGWCC 2 cut(s) 167, 943
XagI CCTNNNNNAGG 1 cut(s) 1691
XapI RAATTY 6 cut(s) 10, 697, 961, 1179, 1253, 1659
XceI RCATGY 2 cut(s) 318, 659
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 5 cut(s) 342, 642, 969, 1281, 1434
ZrmI AGTACT 2 cut(s) 24, 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.