RchiOBHm_Chr2g0091181

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009476
Physical Location & Seq
Forward (+)
4855254 .. 4855895
642 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGCACCAATGGAGACATGTTACTGAAACTGATGGTCCACTTCGTTGGGGAATGAAGGGAAGGAACTCCCATGATATCTTATCTAACTTCGATGATCCAGACATGATGCCTTATGTTACAAATTCTGGTGATTATCTTGATGCACTAGGCTTTGAAGAATTGCTGGAGCATCTTGCTCAGGCAGAGAGATTAAGACTAGGGGCACCTCCTGCTGCTGTCTCCTTTTTGAATAATCTGCCTCTCATTCTTATTAGTAAGGAACATGGGAAGCATGATGACTTAGCCTGTGCAATTTGCAAGGATGTATTGACTATTAGCACTGCAATGAATCGGCTTCCTTGCTTTCACTTGTATCACACTTCCTGTATTCTGCCATGGTTGAGTACACGAAATTCTTGCCCCCTTTGTCGTTATAAGATACCAGCTGATGACAGAGACTACGAAGAGGGGAAGCGAAATGCTGGTGGTAGAGTGGAGATCCACACCCGGCGGCAGAATGCTAGAGATGACAGGTCTGCTGGTGTTTTTAATAGAGCTGAAGAAGGCGAAGATCATGCTTTTAGTGAAACTAGAGTTAAGTATAGGTTCCAAGTAGGTAGGGAATCTGACTCTAATACCTCCGGTGGAGAAAATAGTCAATGA

Protein Analysis

213

Amino Acids

24.17

Weight (kDa)

5.92

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 95 - 137 7.5e-11 Ring finger domain
zf-C3HC4_2 PF13923 96 - 136 3.9e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 96 - 136 9.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 109 - 137 2.3e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 202
AciI CCGC 1 cut(s) 490
AclWI GGATC 2 cut(s) 89, 472
AcsI RAATTY 2 cut(s) 121, 391
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 1 cut(s) 385
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 2 cut(s) 155, 229
AluBI AGCT 2 cut(s) 425, 536
AluI AGCT 2 cut(s) 425, 536
Alw26I GTCTC 3 cut(s) 7, 223, 429
AlwI GGATC 2 cut(s) 89, 472
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 121, 391
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 26
BcgI CGANNNNNNTGC 4 cut(s) 378, 412, 536, 570
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 3 cut(s) 7, 223, 429
BfaI CTAG 4 cut(s) 146, 197, 501, 570
BisI GCNGC 2 cut(s) 213, 491
BlsI GCNGC 2 cut(s) 214, 492
Bme1390I CCNGG 1 cut(s) 487
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 204, 587
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 3 cut(s) 96, 130, 178
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 487
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 199
BshNI GGYRCC 1 cut(s) 202
BsiSI CCGG 2 cut(s) 487, 621
BsmAI GTCTC 3 cut(s) 7, 223, 429
BsmI GAATGC 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 3 cut(s) 94, 477, 550
Bsp19I CCATGG 1 cut(s) 374
BspACI CCGC 1 cut(s) 490
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 204, 587
BspPI GGATC 2 cut(s) 89, 472
BspT107I GGYRCC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 3 cut(s) 94, 477, 550
BssT1I CCWWGG 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 438
BstAPI GCANNNNNTGC 1 cut(s) 209
BstDEI CTNAG 2 cut(s) 177, 280
BstDSI CCRYGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 3 cut(s) 97, 480, 553
BstMAI GTCTC 3 cut(s) 7, 223, 429
BstMBI GATC 3 cut(s) 94, 477, 550
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 485
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 477
BstXI CCANNNNNNTGG 1 cut(s) 45
BstYI RGATCY 1 cut(s) 477
BtgI CCRYGG 1 cut(s) 374
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 384
CviAII CATG 7 cut(s) 17, 71, 103, 263, 272, 375, 554
CviJI RGCY 5 cut(s) 150, 284, 334, 425, 536
CviKI_1 RGCY 5 cut(s) 150, 284, 334, 425, 536
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 2 cut(s) 177, 280
DpnI GATC 3 cut(s) 96, 479, 552
DpnII GATC 3 cut(s) 94, 477, 550
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 374
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 558
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 7 cut(s) 20, 74, 106, 266, 275, 378, 557
FatI CATG 7 cut(s) 16, 70, 102, 262, 271, 374, 553
Fnu4HI GCNGC 2 cut(s) 213, 491
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 213, 491
FspBI CTAG 4 cut(s) 146, 197, 501, 570
GluI GCNGC 2 cut(s) 213, 491
GsuI CTGGAG 1 cut(s) 185
HapII CCGG 2 cut(s) 487, 621
Hin1II CATG 7 cut(s) 20, 74, 106, 266, 275, 378, 557
HinfI GANTC 3 cut(s) 328, 602, 608
HpaII CCGG 2 cut(s) 487, 621
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 38, 386
Hpy188I TCNGA 1 cut(s) 607
Hpy188III TCNNGA 2 cut(s) 98, 137
Hpy8I GTNNAC 2 cut(s) 38, 386
HpyAV CCTTC 3 cut(s) 49, 54, 536
HpyCH4V TGCA 5 cut(s) 4, 143, 290, 297, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 177, 280
Hsp92II CATG 7 cut(s) 20, 74, 106, 266, 275, 378, 557
Kzo9I GATC 3 cut(s) 94, 477, 550
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 3 cut(s) 96, 130, 178
MaeI CTAG 4 cut(s) 146, 197, 501, 570
MaeIII GTNAC 2 cut(s) 19, 115
MalI GATC 3 cut(s) 96, 479, 552
MboI GATC 3 cut(s) 94, 477, 550
MboII GAAGA 4 cut(s) 167, 455, 551, 560
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 4 cut(s) 121, 158, 291, 391
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 4 cut(s) 216, 249, 439, 628
MseI TTAA 3 cut(s) 191, 528, 576
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 487, 621
MspR9I CCNGG 1 cut(s) 487
Mva1269I GAATGC 1 cut(s) 502
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 1 cut(s) 487
NcoI CCATGG 1 cut(s) 374
NdeII GATC 3 cut(s) 94, 477, 550
NlaIII CATG 7 cut(s) 20, 74, 106, 266, 275, 378, 557
NlaIV GGNNCC 2 cut(s) 204, 587
NspI RCATGY 1 cut(s) 20
PciI ACATGT 1 cut(s) 16
PctI GAATGC 1 cut(s) 502
PfeI GAWTC 2 cut(s) 328, 602
PkrI GCNGC 2 cut(s) 214, 492
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
PscI ACATGT 1 cut(s) 16
PsiI TTATAA 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 204, 587
PspPI GGNCC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 477
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 3 cut(s) 191, 528, 576
SatI GCNGC 2 cut(s) 213, 491
Sau3AI GATC 3 cut(s) 94, 477, 550
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 1 cut(s) 205
SetI ASST 7 cut(s) 208, 427, 515, 538, 587, 598, 620
SfaNI GCATC 3 cut(s) 96, 130, 178
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 4 cut(s) 121, 158, 291, 391
SsiI CCGC 1 cut(s) 490
SspMI CTAG 4 cut(s) 146, 197, 501, 570
StyD4I CCNGG 1 cut(s) 485
StyI CCWWGG 1 cut(s) 374
TaqI TCGA 1 cut(s) 90
TasI AATT 4 cut(s) 121, 158, 291, 391
TatI WGTACW 1 cut(s) 383
TauI GCSGC 1 cut(s) 493
TfiI GAWTC 2 cut(s) 328, 602
Tru1I TTAA 3 cut(s) 191, 528, 576
Tru9I TTAA 3 cut(s) 191, 528, 576
TscAI CASTG 1 cut(s) 325
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 68, 341
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 2 cut(s) 121, 391
XceI RCATGY 1 cut(s) 20
XspI CTAG 4 cut(s) 146, 197, 501, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.