RchiOBHm_Chr2g0106341

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005695
Physical Location & Seq
Forward (+)
17762252 .. 17763359
1108 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGCGTGGAATTGCTTTAGCATTGGGTGGATCTCCATATGAATTTGAAGGTGAAAGAGCTGGAGACGCATTTTGGGTGATGCGTCTCATTGGTTACCCAGAGTTACGCAATGACATTGGATGTGGAGCTCACACGGATTATGGTTTGCTGACACTGGTTAATCAGGATGATGATATAAATGCACTTCAGGTGAGAAACCTGTCGGGCGAGTGGATATCAGCACCTCCTGTTCCCGGCACATTCGTCTGCAATATCGGAGACATGCTAAAGATTTACTCGAATGGTTTGTATGAGTCAACTTTGCATCAAGTTATCAACTCTTCCCCGAAATACAGGGTTTGTGTAGCATATTTCTATGAGACCAACTTTGATACAGCAGTGGAGCCTTTGGACATTTGCAAACAGAAGACAGGTGGAGCTAAGAAATTTGAAAGAGCTGTATATGGAGAGCATTTAGTCAGCAAGGTTCAAACAAATTTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

161

Amino Acids

17.86

Weight (kDa)

5.14

Isoelectric Point (pI)

18.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 35 - 120 1.2e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 3 cut(s) 41, 425, 475
AcuI CTGAAG 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 3 cut(s) 47, 431, 470
AluBI AGCT 4 cut(s) 59, 128, 419, 437
AluI AGCT 4 cut(s) 59, 128, 419, 437
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 4 cut(s) 57, 89, 252, 353
AlwI GGATC 1 cut(s) 37
ApoI RAATTY 3 cut(s) 41, 425, 475
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 62, 88, 202
BaeI ACNNNNGTAYC 2 cut(s) 363, 396
BanII GRGCYC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 130
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 4 cut(s) 57, 89, 252, 353
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 2 cut(s) 69, 313
BpiI GAAGAC 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 159
Bse3DI GCAATG 1 cut(s) 115
BseGI GGATG 2 cut(s) 125, 172
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 4 cut(s) 57, 89, 252, 353
BsmBI CGTCTC 2 cut(s) 57, 89
Bso31I GGTCTC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 159
BssMI GATC 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 420
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 2 cut(s) 125, 172
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 4 cut(s) 57, 89, 252, 353
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 265
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BtsCI GGATG 2 cut(s) 125, 172
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 152, 384
CseI GACGC 2 cut(s) 71, 74
CviAII CATG 1 cut(s) 262
CviJI RGCY 5 cut(s) 59, 128, 385, 419, 437
CviKI_1 RGCY 5 cut(s) 59, 128, 385, 419, 437
DdeI CTNAG 1 cut(s) 420
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Ecl136II GAGCTC 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 170
Eco91I GGTNACC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 92
EcoRV GATATC 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 130
Esp3I CGTCTC 2 cut(s) 57, 89
FaeI CATG 1 cut(s) 265
FatI CATG 1 cut(s) 261
FauNDI CATATG 1 cut(s) 37
FokI GGATG 2 cut(s) 132, 179
FriOI GRGCYC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 81
HapII CCGG 1 cut(s) 234
HgaI GACGC 2 cut(s) 71, 74
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 1 cut(s) 293
HpaII CCGG 1 cut(s) 234
HphI GGTGA 3 cut(s) 62, 88, 202
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 41
HpyCH4V TGCA 4 cut(s) 182, 249, 304, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 3 cut(s) 125, 382, 416
LweI GCATC 2 cut(s) 69, 313
MaeIII GTNAC 2 cut(s) 92, 102
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 2 cut(s) 312, 418
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 4 cut(s) 9, 41, 425, 475
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 1 cut(s) 234
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 37
NdeII GATC 1 cut(s) 29
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 384
NspI RCATGY 1 cut(s) 265
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp124BI GAGCTC 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 384
PsuI RGATCY 1 cut(s) 29
SacI GAGCTC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 29
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 2 cut(s) 69, 313
Sse9I AATT 4 cut(s) 9, 41, 425, 475
SstI GAGCTC 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 232
TaqI TCGA 1 cut(s) 278
TasI AATT 4 cut(s) 9, 41, 425, 475
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 159, 384
TspDTI ATGAA 1 cut(s) 54
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 2 cut(s) 159, 384
XapI RAATTY 3 cut(s) 41, 425, 475
XceI RCATGY 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.