RchiOBHm_Chr2g0112411

histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001010
Physical Location & Seq
Forward (+)
24409135 .. 24411072
1938 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGATGGCCCGTACTAAGCAAACTGCTCGTAAGTCAACTGGAGGAAAGGCTCCAAGGAAGCAGCTCGCCACCAAGGCTGCTCGTAAGTCTGCCCCAACCACTGGAGGAGTCAAGAAGCCCCACAGATACCGCCCTGGAACTGTTGCTCTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTCCTGATCAGGAAGTTGCCGTTCCAGAGGCTTGTTCGTGAAATTGCGCAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCATGCAGTTCTTGCCCTGCAGGAGGCTGCTGAGGCTTACCTAGTTGGTCTGTTTGAGGACACCAATCTTTGTGCCATCCATGCCAAGCGGGTTACCATCATGCCCAAGGATATCCAGCTGGCTAGGAGGATCAGGGGTGAGCGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

137

Amino Acids

15.54

Weight (kDa)

11.15

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 45 - 132 1e-38 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 231
AccB7I CCANNNNNTGG 1 cut(s) 101
AciI CCGC 2 cut(s) 130, 352
AclWI GGATC 1 cut(s) 401
AfaI GTAC 3 cut(s) 13, 167, 178
AfiI CCNNNNNNNGG 2 cut(s) 101, 286
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 3 cut(s) 64, 184, 382
AluI AGCT 3 cut(s) 64, 184, 382
Alw21I GWGCWC 1 cut(s) 186
AlwI GGATC 1 cut(s) 401
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 61, 77, 290
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 413
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 64, 73, 277
BccI CCATC 2 cut(s) 347, 368
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 1 cut(s) 135
BclI TGATCA 1 cut(s) 189
BfaI CTAG 2 cut(s) 305, 387
BfmI CTRYAG 1 cut(s) 281
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 3 cut(s) 62, 78, 291
BlsI GCNGC 3 cut(s) 63, 79, 292
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 135
BpmI CTGGAG 2 cut(s) 60, 123
Bpu10I CCTNAGC 1 cut(s) 294
BsaJI CCNNGG 4 cut(s) 53, 72, 133, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 286
Bse1I ACTGG 2 cut(s) 43, 106
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 4 cut(s) 53, 72, 133, 369
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 101, 286
BseMII CTCAG 2 cut(s) 171, 285
BseNI ACTGG 2 cut(s) 43, 106
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 64, 73, 277
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 101, 286
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 3 cut(s) 189, 247, 393
BspACI CCGC 2 cut(s) 130, 352
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 172, 286
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 285
BspPI GGATC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 153
BsrI ACTGG 2 cut(s) 43, 106
BssECI CCNNGG 4 cut(s) 53, 72, 133, 369
BssMI GATC 3 cut(s) 189, 247, 393
BssT1I CCWWGG 3 cut(s) 53, 72, 369
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 153, 167
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 66, 384, 408
BstDEI CTNAG 3 cut(s) 15, 180, 294
BstEII GGTNACC 1 cut(s) 355
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 3 cut(s) 192, 250, 396
BstMBI GATC 3 cut(s) 189, 247, 393
BstMWI GCNNNNNNNGC 4 cut(s) 74, 275, 296, 344
BstNI CCWGG 1 cut(s) 135
BstPI GGTNACC 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 281
BstV1I GCAGC 3 cut(s) 64, 73, 277
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 66, 384, 408
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 3 cut(s) 12, 166, 177
CviAII CATG 3 cut(s) 266, 344, 364
CviQI GTAC 3 cut(s) 12, 166, 177
DdeI CTNAG 3 cut(s) 15, 180, 294
DpnI GATC 3 cut(s) 191, 249, 395
DpnII GATC 3 cut(s) 189, 247, 393
Eam1104I CTCTTC 2 cut(s) 153, 167
EarI CTCTTC 2 cut(s) 153, 167
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 3 cut(s) 53, 72, 369
Eco24I GRGCYC 1 cut(s) 186
Eco32I GATATC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 184
Eco91I GGTNACC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 184
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 133
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 3 cut(s) 53, 72, 369
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 3 cut(s) 53, 72, 369
FaeI CATG 3 cut(s) 269, 347, 367
FaiI YATR 3 cut(s) 267, 345, 365
FatI CATG 3 cut(s) 265, 343, 363
FauI CCCGC 1 cut(s) 345
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 62, 78, 291
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 3 cut(s) 62, 78, 291
FspBI CTAG 2 cut(s) 305, 387
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 1 cut(s) 231
GluI GCNGC 3 cut(s) 62, 78, 291
GsuI CTGGAG 2 cut(s) 60, 123
HaeIII GGCC 1 cut(s) 8
HhaI GCGC 1 cut(s) 232
Hin1II CATG 3 cut(s) 269, 347, 367
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 1 cut(s) 108
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 36
Hpy188III TCNNGA 8 cut(s) 112, 152, 187, 193, 208, 221, 241, 259
Hpy8I GTNNAC 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 269, 283
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 275, 296, 344
HpyF3I CTNAG 3 cut(s) 15, 180, 294
Hsp92II CATG 3 cut(s) 269, 347, 367
HspAI GCGC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 3 cut(s) 189, 247, 393
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 55, 189
Lsp1109I GCAGC 3 cut(s) 64, 73, 277
MaeI CTAG 2 cut(s) 305, 387
MaeIII GTNAC 1 cut(s) 355
MalI GATC 3 cut(s) 191, 249, 395
MboI GATC 3 cut(s) 189, 247, 393
MboII GAAGA 2 cut(s) 140, 184
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 1 cut(s) 225
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 7 cut(s) 35, 98, 204, 280, 289, 313, 384
MseI TTAA 1 cut(s) 412
MspA1I CMGCKG 1 cut(s) 382
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 4 cut(s) 74, 275, 296, 344
NdeII GATC 3 cut(s) 189, 247, 393
NlaIII CATG 3 cut(s) 269, 347, 367
NlaIV GGNNCC 1 cut(s) 51
NsbI TGCGCA 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 101
PkrI GCNGC 3 cut(s) 63, 79, 292
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 133
PspEI GGTNACC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 3 cut(s) 13, 167, 178
RsaNI GTAC 3 cut(s) 12, 166, 177
SacI GAGCTC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 412
SatI GCNGC 3 cut(s) 62, 78, 291
Sau3AI GATC 3 cut(s) 189, 247, 393
Sau96I GGNCC 1 cut(s) 7
SbfI CCTGCAGG 1 cut(s) 285
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 135
SdaI CCTGCAGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 186
SetI ASST 4 cut(s) 66, 186, 306, 384
SfcI CTRYAG 1 cut(s) 281
Sse8387I CCTGCAGG 1 cut(s) 285
Sse9I AATT 1 cut(s) 225
SsiI CCGC 2 cut(s) 130, 352
SspMI CTAG 2 cut(s) 305, 387
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 3 cut(s) 53, 72, 369
TaaI ACNGT 1 cut(s) 142
TasI AATT 1 cut(s) 225
TatI WGTACW 1 cut(s) 176
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TscAI CASTG 1 cut(s) 106
TseI GCWGC 3 cut(s) 61, 77, 290
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 284
XspI CTAG 2 cut(s) 305, 387
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.