Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008929

Physical Location & Seq

Genomic Coordinates Forward (+)

37004442 .. 37005508

Gene Structure 1067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTCTTTGACTGGATATTAGATTTGGGATTGGCGTACTTTGGGTGGTGTGACGATGTCCCAAAGTTACAGAGAAATTTAATATCCTTGAGCCAGTTAGACTCCAAAGGCTGCAGGGTTTCGTCAGCAGGGGGAGTTATGAAAATCACACGTGGCGGCATGGTCCTAATGAAGGGAGAACAGTGTGGTAGGCATGCAGGAGACATGCAGGAGACAAGGGAAAAGAAGAAAAGGAAAAGGCATGCAAGGGAAAAGAAGAAAAGGAGAAAGCATGAACCGGCTTTGAAGAGAGAGCTAGAGAGAGAGTGTGCTGGAGAGAGAGTGTGCTGGAGAGTGGAATATATATATATCCCATATCGGCAGAAGGAGGGTGAGAGAGGGCAGAGAGCCCAAACTCCAGAGAGAGAGGTTCATATACAACTCCAGGAGTCTTCAAGATGTAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

17.62

Weight (kDa)

9.86

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00300
fragaria_vesca	FvH4_1g10045 FvH4_1g25743 FvH4_2g16991 FvH4_2g31701 FvH4_4g08662 FvH4_6g44103 FvH4_6g48812
malus_domestica	MD04G1222900.v1.1 MD05G1232300.v1.1 MD05G1288100.v1.1 MD12G1229000.v1.1
prunus_persica	Prupe.1G257900_v2.0.a1
pyrus_communis	pycom13g14690
rosa_chinensis	RchiOBHm_Chr2g0123731 RchiOBHm_Chr2g0123741 RchiOBHm_Chr2g0157311 RchiOBHm_Chr7g0200891
rosa_roxburghii	Rroxscaffold_7G00215990
rosa_wichuraiana	Rw1G024090 Rw2G038200 Rw6G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	76
AcvI	CACGTG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	286, 435
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	2 cut(s)	195, 206
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	391
BbrPI	CACGTG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	195, 206
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	2 cut(s)	112, 157
BlsI	GCNGC	2 cut(s)	113, 158
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	4 cut(s)	333, 349, 381, 407
BpuEI	CTTGAG	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	17, 94
BseBI	CCWGG	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	2 cut(s)	17, 94
BseXI	GCAGC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	195, 206
BsmFI	GGGAC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	391
BspACI	CCGC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	17, 94
BssAI	RCCGGY	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	195, 243
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstMAI	GTCTC	2 cut(s)	195, 206
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	3 cut(s)	197, 208, 245
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	195, 243
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	5 cut(s)	160, 194, 205, 242, 272
CviJI	RGCY	5 cut(s)	93, 111, 281, 295, 389
CviKI_1	RGCY	5 cut(s)	93, 111, 281, 295, 389
CviQI	GTAC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	163
Eco72I	CACGTG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	391
FaeI	CATG	5 cut(s)	163, 197, 208, 245, 275
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	5 cut(s)	159, 193, 204, 241, 271
Fnu4HI	GCNGC	2 cut(s)	112, 157
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	2 cut(s)	112, 157
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	112, 157
GsuI	CTGGAG	4 cut(s)	333, 349, 381, 407
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	5 cut(s)	163, 197, 208, 245, 275
HinfI	GANTC	2 cut(s)	101, 428
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	383
Hpy188III	TCNNGA	2 cut(s)	398, 435
HpyAV	CCTTC	2 cut(s)	166, 358
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	114, 197, 208, 245
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	5 cut(s)	163, 197, 208, 245, 275
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	2 cut(s)	50, 66
MboII	GAAGA	4 cut(s)	238, 268, 298, 423
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	2 cut(s)	95, 437
MnlI	CCTC	3 cut(s)	361, 371, 400
MseI	TTAA	1 cut(s)	80
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
NlaIII	CATG	5 cut(s)	163, 197, 208, 245, 275
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	3 cut(s)	197, 208, 245
PaeI	GCATGC	2 cut(s)	197, 245
PflFI	GACNNNGTC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	113, 158
PleI	GAGTC	2 cut(s)	95, 436
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
PpsI	GAGTC	2 cut(s)	95, 436
Ppu21I	YACGTR	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	423
PspCI	CACGTG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	116
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	2 cut(s)	112, 157
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	95, 437
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	3 cut(s)	154, 297, 411
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	2 cut(s)	197, 245
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	183
TaiI	ACGT	1 cut(s)	154
TasI	AATT	1 cut(s)	76
TauI	GCSGC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	155, 185, 288, 401
TspRI	CASTG	1 cut(s)	188
Tth111I	GACNNNGTC	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	3 cut(s)	197, 208, 245
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.