Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014845

Physical Location & Seq

Genomic Coordinates Forward (+)

53577559 .. 53578907

Gene Structure 1349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGTTGCAGGCTGCAGATTATGTTCAGGTACATGATGAGAAATTGTTGGTGAATGGTGAAATTCAAAATGAAAATTACATATTGGAGCCTTTTACCTATGAAATGGAACCAATTCTCATTCCAGAAGGCTATATCTTTGTGATGGGGGACAACTGCAACAACAATTTTGACTCTCATGACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

61

Amino Acids

7.18

Weight (kDa)

4.05

Isoelectric Point (pI)

28.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	6 - 61	4.3e-08	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014845)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0136211 RchiOBHm_Chr5g0044941 RchiOBHm_Chr5g0063701 RchiOBHm_Chr7g0238341
rosa_laevigata	RLG00000013631
rosa_multiflora	Rmu_sc0009071.1_g000001
rosa_rugosa	Rorug01G0294300 Rorug07G0312300
rosa_samantha	Rh6BG089100 Rh6CG085300 Rh6CG093700 Rh7DG319400 Rh7DG478000
rosa_wichuraiana	Rw1G006480 Rw4G004840 Rw7G031920 Rw7G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	60
AfaI	GTAC	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	61, 68
BccI	CCATC	1 cut(s)	136
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	87, 108
Bse1I	ACTGG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	87, 108
BspMAI	CTGCAG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	32, 176
CviJI	RGCY	3 cut(s)	11, 88, 129
CviKI_1	RGCY	3 cut(s)	11, 88, 129
CviQI	GTAC	1 cut(s)	29
FaeI	CATG	2 cut(s)	35, 179
FaiI	YATR	6 cut(s)	21, 33, 80, 99, 132, 177
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	31, 175
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	35, 179
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	2 cut(s)	61, 68
Hpy188III	TCNNGA	2 cut(s)	122, 176
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	7, 14, 156
Hsp92II	CATG	2 cut(s)	35, 179
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	3 cut(s)	11, 135, 166
MluCI	AATT	5 cut(s)	41, 60, 73, 111, 163
MlyI	GAGTC	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	35, 179
NlaIV	GGNNCC	2 cut(s)	87, 108
PagI	TCATGA	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	87, 108
PstI	CTGCAG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SatI	GCNGC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	164
SetI	ASST	2 cut(s)	30, 98
SfcI	CTRYAG	1 cut(s)	12
SgeI	CNNG	4 cut(s)	20, 38, 44, 134
Sse9I	AATT	5 cut(s)	41, 60, 73, 111, 163
TasI	AATT	5 cut(s)	41, 60, 73, 111, 163
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	84, 114
XapI	RAATTY	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.