Rw7G031920

Signal peptidase, peptidase S26

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014845
Physical Location & Seq
Forward (+)
45984404 .. 45988553
4150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031920.1

Sequence Viewer

Length: 648 bp
ATGGAGAGCTCAAACAGATCGGAGGATCCGATTGAGCAATCAGAGATATATGAGAGATTAAGCTACAGGTCTATTCCTTCCACTTCTGTGTACCTGACTGTCGATGTGAGTGATCGTGTTTTAGCTGAGAAGGTTTCATATCTCTTTAGAAAGCCTGAGGTTTCAGATATAGTAATTTTCAAGGCATCTCCAATTGAATTGCTGTTTGTTGTTTTAAAAAACTTTGTGATATGTGGTGTTGACACTTTCTCCTTGGGTATTCTGTGCTCGGGCGATGTATTTATAAAAAGAATTGTGGCCAAGGCTGCAGATTATGTTCAGGTACATGATGAGAAATTGTTGGTGAATGGTGAAATTCAAAATGAAAATTACATATTGGAGCCTTTTACCTATGAAATGGAACCAATTCTCATTCCAGAAGGCTATATCTTTGTGATGGGGGACAACCGCAACAACAATTTTGACTCTCATAACTGCACTGCTGGAATTATCTTATTTGATTTTGTCTATGCTTCCTTTTCTTTCATTTCTTTGGTTTTTCTGCTCATCTTGGTCACCAAAGTTTACAAGAAAAGAAAAGATTGTACCAATCTTAATTCCTTACAGTTTTGGCATATCATTTCTTTTATTTTCACTTTAGTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S26

Protein Analysis

215

Amino Acids

24.7

Weight (kDa)

4.92

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 23 - 164 3.9e-22 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AciI CCGC 1 cut(s) 448
AclWI GGATC 2 cut(s) 20, 33
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 354
AfaI GTAC 3 cut(s) 92, 324, 586
AgsI TTSAA 3 cut(s) 181, 197, 359
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 3 cut(s) 9, 63, 125
AluI AGCT 3 cut(s) 9, 63, 125
Alw21I GWGCWC 2 cut(s) 11, 269
AlwI GGATC 2 cut(s) 20, 33
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 405
AsuHPI GGTGA 3 cut(s) 355, 362, 547
AvaI CYCGRG 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 156
BalI TGGCCA 1 cut(s) 299
BamHI GGATCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 11, 269
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 430
BfmI CTRYAG 2 cut(s) 64, 306
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 27, 381, 402
BmsI GCATC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 252, 300
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bse21I CCTNAGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 252, 300
BseMII CTCAG 2 cut(s) 117, 147
BseXI GCAGC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 460
BshFI GGCC 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 11, 269
BsiHKCI CYCGRG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 2 cut(s) 11, 269
Bsp143I GATC 3 cut(s) 17, 25, 112
BspACI CCGC 1 cut(s) 448
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 118, 148
BspLI GGNNCC 3 cut(s) 27, 381, 402
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 2 cut(s) 20, 33
BssECI CCNNGG 2 cut(s) 252, 300
BssMI GATC 3 cut(s) 17, 25, 112
BssT1I CCWWGG 2 cut(s) 252, 300
Bst4CI ACNGT 2 cut(s) 100, 606
BstDEI CTNAG 2 cut(s) 126, 156
BstEII GGTNACC 1 cut(s) 553
BstKTI GATC 3 cut(s) 20, 28, 115
BstMBI GATC 3 cut(s) 17, 25, 112
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstPI GGTNACC 1 cut(s) 553
BstSFI CTRYAG 2 cut(s) 64, 306
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 288
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 477
Csp6I GTAC 3 cut(s) 91, 323, 585
CviAII CATG 1 cut(s) 326
CviJI RGCY 8 cut(s) 9, 63, 125, 154, 299, 305, 382, 423
CviKI_1 RGCY 8 cut(s) 9, 63, 125, 154, 299, 305, 382, 423
CviQI GTAC 3 cut(s) 91, 323, 585
DdeI CTNAG 2 cut(s) 126, 156
DpnI GATC 3 cut(s) 19, 27, 114
DpnII GATC 3 cut(s) 17, 25, 112
DraI TTTAAA 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 9
Eco130I CCWWGG 2 cut(s) 252, 300
Eco24I GRGCYC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 9
EcoO65I GGTNACC 1 cut(s) 553
EcoT14I CCWWGG 2 cut(s) 252, 300
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 252, 300
FaeI CATG 1 cut(s) 329
FaqI GGGAC 1 cut(s) 455
FatI CATG 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 299
Hin1II CATG 1 cut(s) 329
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 464
HphI GGTGA 3 cut(s) 355, 362, 547
Hpy166II GTNNAC 3 cut(s) 91, 241, 565
Hpy188I TCNGA 4 cut(s) 22, 30, 43, 166
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 3 cut(s) 91, 241, 565
HpyAV CCTTC 3 cut(s) 87, 124, 413
HpyCH4III ACNGT 2 cut(s) 100, 606
HpyCH4V TGCA 2 cut(s) 308, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 126, 156
Hsp92II CATG 1 cut(s) 329
Kzo9I GATC 3 cut(s) 17, 25, 112
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 6 cut(s) 52, 107, 168, 305, 429, 468
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 553
MalI GATC 3 cut(s) 19, 27, 114
MboI GATC 3 cut(s) 17, 25, 112
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 11, 269
MlsI TGGCCA 1 cut(s) 299
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 2 cut(s) 16, 151
Mox20I TGGCCA 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 405
MscI TGGCCA 1 cut(s) 299
MseI TTAA 3 cut(s) 59, 215, 594
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 299
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 3 cut(s) 17, 25, 112
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 3 cut(s) 27, 381, 402
NmuCI GTSAC 1 cut(s) 553
OliI CACNNNNGTG 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 405
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PsiI TTATAA 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 11
PspEI GGTNACC 1 cut(s) 553
PspN4I GGNNCC 3 cut(s) 27, 381, 402
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 3 cut(s) 92, 324, 586
RsaNI GTAC 3 cut(s) 91, 323, 585
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 3 cut(s) 59, 215, 594
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 3 cut(s) 17, 25, 112
SchI GAGTC 1 cut(s) 458
SduI GDGCHC 2 cut(s) 11, 269
SetI ASST 9 cut(s) 11, 65, 71, 96, 127, 135, 162, 324, 392
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 2 cut(s) 64, 306
SmiMI CAYNNNNRTG 1 cut(s) 86
SsiI CCGC 1 cut(s) 448
SstI GAGCTC 1 cut(s) 11
StyI CCWWGG 2 cut(s) 252, 300
TaaI ACNGT 2 cut(s) 100, 606
TaqI TCGA 1 cut(s) 102
Tru1I TTAA 3 cut(s) 59, 215, 594
Tru9I TTAA 3 cut(s) 59, 215, 594
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 4 cut(s) 126, 378, 408, 514
TspRI CASTG 1 cut(s) 484
XapI RAATTY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.