Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014845

Physical Location & Seq

Genomic Coordinates Reverse (-)

9334444 .. 9342639

Gene Structure 8196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG085300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTGGCTATGGCGGTTTTTAGGCTGCTTATTCTCTTCTTTGTTGCTCTGGGTGGCGAAGGTTCTGAGGTGGTGTCGGGGTTTAGTGATGTCGTGGATGTGGCTTGTGTTGTAACCACACTCGGTGGTGCTGACTGGGTGAAGTGCTCGATGTTGAACCGTGTGGTTTTGAATCGAGATGGGCTCTCAATGGCTCAAATTGCGAGTTGGATGAAGAAGCCAGGCAGTTTCTCATCATCCATCAACGCGGTCAAGGAGGGGACTTTTCTCTGCCAATCAGAAGAAGAGGATTTGCTGAGGGAAAGTCTAGAAAGGAGGAAGGGATGTCTTGGTCGATTTCAGTCTGTTCCCAATTTGGGAATTTCTATTTCACATTCAAAGTTTCAATCTTTAAAGGAGCGTATTGAAAGACGTTTGACATATCTCAAAAGCCAAAAAGAGAAACTCGAATCAATCATTCTGCTCCGGTCATCCTTGGCCGAGCCAAGGTCTATTCCTTCCACTTCTGTGTACCTGACTGTCGATGTGAGTGATCGTGTTTTAGCTGAGAAGGTTTCATATCTCTTTAGAAAGCCTGAGGTTTCAGATATAGTAATTTTCAAGGCATCTCCAATGTTGCAGAATTGTGGCCAAGGCTGCAGATTATGTTCATGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

219

Amino Acids

24.2

Weight (kDa)

8.79

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	152 - 203	3.7e-07	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014845)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0136211 RchiOBHm_Chr5g0044941 RchiOBHm_Chr5g0063701 RchiOBHm_Chr7g0238341
rosa_laevigata	RLG00000013631
rosa_multiflora	Rmu_sc0009071.1_g000001
rosa_rugosa	Rorug01G0294300 Rorug07G0312300
rosa_samantha	Rh6BG089100 Rh6CG085300 Rh6CG093700 Rh7DG319400 Rh7DG478000
rosa_wichuraiana	Rw1G006480 Rw4G004840 Rw7G031920 Rw7G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AciI	CCGC	2 cut(s)	14, 248
AcoI	YGGCCR	2 cut(s)	477, 628
AcsI	RAATTY	1 cut(s)	360
AdeI	CACNNNGTG	1 cut(s)	125
AfaI	GTAC	2 cut(s)	512, 655
AfiI	CCNNNNNNNGG	2 cut(s)	356, 486
AgsI	TTSAA	6 cut(s)	157, 172, 378, 386, 407, 601
AjnI	CCWGG	1 cut(s)	220
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	1 cut(s)	545
AluI	AGCT	1 cut(s)	545
Alw21I	GWGCWC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	477, 628
ApeKI	GCWGC	2 cut(s)	25, 636
ApoI	RAATTY	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	576
BalI	TGGCCA	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	12, 623
BccI	CCATC	2 cut(s)	173, 248
BciT130I	CCWGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	637
BisI	GCNGC	2 cut(s)	26, 637
BlsI	GCNGC	2 cut(s)	27, 638
Bme1390I	CCNGG	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	614
BmuI	ACTGGG	1 cut(s)	145
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
Bpu10I	CCTNAGC	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	474, 485, 631
BsaWI	WCCGGW	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 486
Bse1I	ACTGG	1 cut(s)	140
Bse21I	CCTNAGG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	474, 485, 631
BseGI	GGATG	5 cut(s)	103, 216, 236, 329, 470
BseLI	CCNNNNNNNGG	2 cut(s)	356, 486
BseMII	CTCAG	4 cut(s)	57, 287, 537, 567
BseNI	ACTGG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	12, 623
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	479, 630
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	466
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	356, 486
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	479, 630
Bsp1286I	GDGCHC	2 cut(s)	149, 186
Bsp1407I	TGTACA	1 cut(s)	653
Bsp143I	GATC	1 cut(s)	532
BspACI	CCGC	2 cut(s)	14, 248
BspANI	GGCC	2 cut(s)	479, 630
BspCNI	CTCAG	4 cut(s)	58, 288, 538, 568
BspFNI	CGCG	1 cut(s)	248
BspMAI	CTGCAG	1 cut(s)	641
BsrGI	TGTACA	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	474, 485, 631
BssMI	GATC	1 cut(s)	532
BssT1I	CCWWGG	3 cut(s)	474, 485, 631
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	161, 520
Bst6I	CTCTTC	2 cut(s)	41, 279
BstAUI	TGTACA	1 cut(s)	653
BstDEI	CTNAG	4 cut(s)	66, 296, 546, 576
BstF5I	GGATG	5 cut(s)	103, 216, 236, 329, 470
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	1 cut(s)	535
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 636
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	12, 623
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	479, 630
BtsCI	GGATG	5 cut(s)	103, 216, 236, 329, 470
Csp6I	GTAC	2 cut(s)	511, 654
CviAII	CATG	2 cut(s)	651, 657
CviQI	GTAC	2 cut(s)	511, 654
DdeI	CTNAG	4 cut(s)	66, 296, 546, 576
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
DraI	TTTAAA	1 cut(s)	393
DraIII	CACNNNGTG	1 cut(s)	125
EaeI	YGGCCR	2 cut(s)	477, 628
Eam1104I	CTCTTC	2 cut(s)	41, 279
EarI	CTCTTC	2 cut(s)	41, 279
Eco130I	CCWWGG	3 cut(s)	474, 485, 631
Eco24I	GRGCYC	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	3 cut(s)	474, 485, 631
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	3 cut(s)	474, 485, 631
FaeI	CATG	2 cut(s)	654, 660
FaiI	YATR	7 cut(s)	11, 421, 559, 590, 646, 652, 658
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	2 cut(s)	650, 656
Fnu4HI	GCNGC	2 cut(s)	26, 637
FokI	GGATG	5 cut(s)	110, 223, 223, 336, 457
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	26, 637
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	2 cut(s)	26, 637
HaeIII	GGCC	2 cut(s)	479, 630
HapII	CCGG	1 cut(s)	466
Hin1II	CATG	2 cut(s)	654, 660
HinfI	GANTC	2 cut(s)	172, 449
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	3 cut(s)	67, 280, 586
Hpy188III	TCNNGA	2 cut(s)	176, 308
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	4 cut(s)	53, 313, 507, 544
HpyCH4III	ACNGT	2 cut(s)	161, 520
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	2 cut(s)	619, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 636
HpyF3I	CTNAG	4 cut(s)	66, 296, 546, 576
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	2 cut(s)	654, 660
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	2 cut(s)	397, 468
LpnPI	CCDG	7 cut(s)	35, 121, 207, 234, 479, 527, 588
Lsp1109I	GCAGC	2 cut(s)	12, 623
LweI	GCATC	1 cut(s)	614
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	534
MboI	GATC	1 cut(s)	532
MboII	GAAGA	4 cut(s)	28, 226, 293, 296
MhlI	GDGCHC	2 cut(s)	149, 186
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	5 cut(s)	198, 352, 360, 594, 622
MluNI	TGGCCA	1 cut(s)	630
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	6 cut(s)	61, 250, 280, 291, 309, 571
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	2 cut(s)	506, 655
Msp20I	TGGCCA	1 cut(s)	630
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	200, 636
NdeII	GATC	1 cut(s)	532
NlaIII	CATG	2 cut(s)	654, 660
NmeAIII	GCCGAG	1 cut(s)	505
OliI	CACNNNNGTG	1 cut(s)	506
PfeI	GAWTC	2 cut(s)	172, 449
PkrI	GCNGC	2 cut(s)	27, 638
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	641
RsaI	GTAC	2 cut(s)	512, 655
RsaNI	GTAC	2 cut(s)	511, 654
RseI	CAYNNNNRTG	2 cut(s)	506, 655
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	2 cut(s)	26, 637
Sau3AI	GATC	1 cut(s)	532
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	149, 186
SetI	ASST	8 cut(s)	64, 72, 415, 491, 516, 547, 555, 582
SfaNI	GCATC	1 cut(s)	614
SfcI	CTRYAG	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	506, 655
Sse9I	AATT	5 cut(s)	198, 352, 360, 594, 622
SsiI	CCGC	2 cut(s)	14, 248
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	3 cut(s)	474, 485, 631
TaaI	ACNGT	2 cut(s)	161, 520
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	5 cut(s)	149, 175, 334, 447, 522
TasI	AATT	5 cut(s)	198, 352, 360, 594, 622
TatI	WGTACW	1 cut(s)	653
TfiI	GAWTC	2 cut(s)	172, 449
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TseI	GCWGC	2 cut(s)	25, 636
TspDTI	ATGAA	3 cut(s)	227, 546, 639
XapI	RAATTY	1 cut(s)	360
XbaI	TCTAGA	1 cut(s)	307
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.