RchiOBHm_Chr7g0238341

Signal peptidase, peptidase S26

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014845
Physical Location & Seq
Forward (+)
63704932 .. 63705949
1018 bp
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UTR
Exon/CDS
Intron
PRQ21359

Sequence Viewer

Length: 420 bp
ATGTTGCTTGAGTTCTTGGGTTTCCTGTGGTTCCTGTCTGAGAAGGTTTCATATCTCCTTAGAAAGCCTGAGGTTTCATATATAGTGATTTTCAAGGCACCTCCAATCTTGCAGAACTTTGTGATATGTGTTGTTGACACTTTCTCCTTGGGTATTCTGTGCAATATGCAGGAAATTGGCTTTAGCTCGGGCGATGTATTTATAAAAAGAATTGTAGCCAGGGGTGGAGATTATGTTGAGGTACATGATGGGAAATTGTTGGTGAATGGTGAAATTGAAAATGAAGACAATTTTTGCTTAGCCTGTGTTTGGCAAATGCACCCGCAAAGTAGAGATGTAATGTGTTTAATGTCTGTAAATGTAGTATTAATCGTATTGATAATACACCCGCAGAGTAACCACATTGAAATAGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S26

Protein Analysis

139

Amino Acids

15.84

Weight (kDa)

4.91

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 10 - 92 3.5e-09 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 97
AciI CCGC 2 cut(s) 323, 389
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 3 cut(s) 94, 278, 407
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Ama87I CYCGRG 1 cut(s) 187
AseI ATTAAT 1 cut(s) 368
AsuHPI GGTGA 2 cut(s) 274, 281
AvaI CYCGRG 1 cut(s) 187
AxyI CCTNAGG 1 cut(s) 69
BanI GGYRCC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 291
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 220
BlpI GCTNAGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 32, 99
BmrFI CCNGG 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 147, 219
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse21I CCTNAGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 2 cut(s) 147, 219
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 30, 60
BshNI GGYRCC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 187
Bsp1720I GCTNAGC 1 cut(s) 298
BspACI CCGC 2 cut(s) 323, 389
BspCNI CTCAG 2 cut(s) 31, 61
BspLI GGNNCC 2 cut(s) 32, 99
BspT107I GGYRCC 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 147, 219
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 220
BstDEI CTNAG 4 cut(s) 39, 59, 69, 298
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 207
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 245
CviJI RGCY 5 cut(s) 67, 180, 186, 218, 302
CviKI_1 RGCY 5 cut(s) 67, 180, 186, 218, 302
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 4 cut(s) 39, 59, 69, 298
Eco130I CCWWGG 1 cut(s) 147
Eco81I CCTNAGG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 248
FaiI YATR 9 cut(s) 52, 79, 81, 83, 127, 167, 203, 234, 246
FatI CATG 1 cut(s) 244
FauI CCCGC 2 cut(s) 330, 396
Hin1II CATG 1 cut(s) 248
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HphI GGTGA 2 cut(s) 274, 281
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 4 cut(s) 112, 162, 169, 319
HpyF3I CTNAG 4 cut(s) 39, 59, 69, 298
Hsp92II CATG 1 cut(s) 248
LpnPI CCDG 7 cut(s) 38, 47, 81, 155, 205, 232, 316
MaeIII GTNAC 1 cut(s) 395
MboII GAAGA 1 cut(s) 296
MluCI AATT 5 cut(s) 174, 210, 254, 273, 289
MnlI CCTC 3 cut(s) 64, 111, 232
MseI TTAA 2 cut(s) 347, 368
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 32, 99
PshBI ATTAAT 1 cut(s) 368
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 32, 99
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 347, 368
ScrFI CCNGG 1 cut(s) 220
SetI ASST 5 cut(s) 48, 75, 103, 188, 243
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 5 cut(s) 174, 210, 254, 273, 289
SsiI CCGC 2 cut(s) 323, 389
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 147
TasI AATT 5 cut(s) 174, 210, 254, 273, 289
Tru1I TTAA 2 cut(s) 347, 368
Tru9I TTAA 2 cut(s) 347, 368
TspDTI ATGAA 3 cut(s) 39, 66, 297
VspI ATTAAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.