Rh6BG089100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014845
Physical Location & Seq
Reverse (-)
13916785 .. 13962395
45611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG089100.1

Sequence Viewer

Length: 756 bp
ATGGTGGCTATGGTGGTTTTTAGGCTGCTTATTCTCTTCTTTGTTGCTCTGGATGGTGAAGGTTCTGAGGTGGTGTCGGGGTTTAGTGATGTCGTGGATGTGGCTTGTGTTGTAACCACACTCGGTGGTGCTGACTGGGTGCAGTGCTCGGTGTTGAACCGTGTGGTTTTGAATCAAGATGGGCTCTCAATGGCTCATATTGCGAGTTGGATGAAGAAGCTAGGCAGTTTCTCATCATCCATCAATGCGGTCGAATGGGATCTCAGTGGCTCGAATTCTAAGTTGGATGAAGGAGCCAGGCGGTTTCTTATCATCCATCAACACGATCAAGTACGATGGGATCAGATTGGGTGTGGTTGCCCTTTGGGTTCCGACTCTGTGATGGGTGCCAGAGATCACGCTATTGGCACTGGATTTCAGCCTCTTTCGGAGCGTGCCGATGAGTGGGTCAGAAGCGTAGGAGCTAGTGGAGGACGTGGTGACACCGGTGAAGGGCGCAGTTTCTTCTCCTGCTTAGGTAGCGATGGTGAATGGTTCACATTAGAGATTAATCATGGTGGAAGATTCTACAGAACCATAAGTGGTAGTCGATATTATAAGGGAGGTGAGAAGCTGTTTGTTGTTAAGCTCGATCGAGACATAATTGCATGGACTTCTTTAAACTGGTATGCTGAAGATCTTGGGTATAGAGACCCACCATTAACGTATTGGTTTAAGGTTCCTGGAAGCAGAGATGAATTGAAGAAGGTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

251

Amino Acids

27.66

Weight (kDa)

5.4

Isoelectric Point (pI)

23.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 177 - 250 2.5e-09 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 386
AciI CCGC 2 cut(s) 248, 301
AclWI GGATC 2 cut(s) 267, 348
AcsI RAATTY 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 693
AdeI CACNNNGTG 1 cut(s) 125
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 444, 492
AgeI ACCGGT 1 cut(s) 485
AgsI TTSAA 3 cut(s) 157, 172, 742
AjiI CACGTC 1 cut(s) 476
AjnI CCWGG 2 cut(s) 296, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 4 cut(s) 220, 464, 613, 628
AluI AGCT 4 cut(s) 220, 464, 613, 628
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 630, 684
AlwI GGATC 2 cut(s) 267, 348
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 274
AseI ATTAAT 1 cut(s) 549
AsiGI ACCGGT 1 cut(s) 485
AspLEI GCGC 1 cut(s) 498
AsuHPI GGTGA 5 cut(s) 68, 491, 500, 539, 617
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 12
BccI CCATC 7 cut(s) 47, 173, 248, 324, 330, 376, 518
BciT130I CCWGG 2 cut(s) 298, 723
BcoDI GTCTC 2 cut(s) 630, 684
BfaI CTAG 2 cut(s) 221, 465
BfmI CTRYAG 1 cut(s) 568
BglII AGATCT 1 cut(s) 676
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 298, 723
BmgBI CACGTC 1 cut(s) 476
BmiI GGNNCC 4 cut(s) 295, 370, 388, 720
BmrFI CCNGG 2 cut(s) 298, 723
BmrI ACTGGG 1 cut(s) 145
BmuI ACTGGG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 514
BsaI GGTCTC 1 cut(s) 684
BsaWI WCCGGW 1 cut(s) 485
Bsc4I CCNNNNNNNGG 2 cut(s) 444, 492
Bse118I RCCGGY 1 cut(s) 485
Bse1I ACTGG 3 cut(s) 140, 415, 668
BseBI CCWGG 2 cut(s) 298, 723
BseGI GGATG 6 cut(s) 58, 103, 216, 236, 292, 312
BseLI CCNNNNNNNGG 2 cut(s) 444, 492
BseMII CTCAG 2 cut(s) 57, 277
BseNI ACTGG 3 cut(s) 140, 415, 668
BseXI GCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 161
Bsh1285I CGRYCG 2 cut(s) 252, 634
BshNI GGYRCC 1 cut(s) 386
BshTI ACCGGT 1 cut(s) 485
BsiEI CGRYCG 2 cut(s) 252, 634
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 486
BslI CCNNNNNNNGG 2 cut(s) 444, 492
BsmAI GTCTC 2 cut(s) 630, 684
Bso31I GGTCTC 1 cut(s) 684
Bsp1286I GDGCHC 2 cut(s) 149, 186
Bsp143I GATC 6 cut(s) 259, 325, 340, 394, 631, 676
BspACI CCGC 2 cut(s) 248, 301
BspCNI CTCAG 2 cut(s) 58, 276
BspLI GGNNCC 4 cut(s) 295, 370, 388, 720
BspPI GGATC 2 cut(s) 267, 348
BspT107I GGYRCC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 684
BsrFI RCCGGY 1 cut(s) 485
BsrI ACTGG 3 cut(s) 140, 415, 668
BssAI RCCGGY 1 cut(s) 485
BssMI GATC 6 cut(s) 259, 325, 340, 394, 631, 676
Bst2UI CCWGG 2 cut(s) 298, 723
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 5 cut(s) 66, 263, 279, 514, 753
BstF5I GGATG 6 cut(s) 58, 103, 216, 236, 292, 312
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 6 cut(s) 262, 328, 343, 397, 634, 679
BstMAI GTCTC 2 cut(s) 630, 684
BstMBI GATC 6 cut(s) 259, 325, 340, 394, 631, 676
BstMCI CGRYCG 2 cut(s) 252, 634
BstMWI GCNNNNNNNGC 2 cut(s) 200, 519
BstNI CCWGG 2 cut(s) 298, 723
BstSCI CCNGG 2 cut(s) 296, 721
BstSFI CTRYAG 1 cut(s) 568
BstV1I GCAGC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 259, 676
BstYI RGATCY 2 cut(s) 259, 676
BtgZI GCGATG 1 cut(s) 537
BtrI CACGTC 1 cut(s) 476
BtsCI GGATG 6 cut(s) 58, 103, 216, 236, 292, 312
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 3 cut(s) 149, 271, 408
Cac8I GCNNGC 1 cut(s) 435
CfoI GCGC 1 cut(s) 498
Cfr10I RCCGGY 1 cut(s) 485
Csp6I GTAC 1 cut(s) 332
CspAI ACCGGT 1 cut(s) 485
CviAII CATG 2 cut(s) 554, 648
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 5 cut(s) 66, 263, 279, 514, 753
DpnI GATC 6 cut(s) 261, 327, 342, 396, 633, 678
DpnII GATC 6 cut(s) 259, 325, 340, 394, 631, 676
DraI TTTAAA 1 cut(s) 660
DraIII CACNNNGTG 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 684
Eco57I CTGAAG 1 cut(s) 693
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 296, 721
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 2 cut(s) 557, 651
FaiI YATR 9 cut(s) 11, 198, 555, 578, 597, 641, 649, 669, 687
FatI CATG 2 cut(s) 553, 647
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 6 cut(s) 65, 110, 223, 223, 299, 299
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 2 cut(s) 221, 465
GlaI GCGC 1 cut(s) 497
GluI GCNGC 1 cut(s) 26
HapII CCGG 1 cut(s) 486
HhaI GCGC 1 cut(s) 498
Hin1II CATG 2 cut(s) 557, 651
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HinfI GANTC 3 cut(s) 172, 374, 564
HpaII CCGG 1 cut(s) 486
HphI GGTGA 5 cut(s) 68, 491, 500, 539, 617
Hpy166II GTNNAC 1 cut(s) 537
Hpy188I TCNGA 5 cut(s) 67, 345, 373, 430, 452
Hpy188III TCNNGA 3 cut(s) 50, 176, 635
Hpy8I GTNNAC 1 cut(s) 537
HpyAV CCTTC 4 cut(s) 53, 284, 485, 739
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 475, 704
HpyCH4V TGCA 2 cut(s) 142, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 519
HpyF3I CTNAG 5 cut(s) 66, 263, 279, 514, 753
HpySE526I ACGT 2 cut(s) 475, 704
Hsp92II CATG 2 cut(s) 557, 651
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 6 cut(s) 259, 325, 340, 394, 631, 676
LmnI GCTCC 3 cut(s) 293, 430, 461
Lsp1109I GCAGC 1 cut(s) 12
MaeI CTAG 2 cut(s) 221, 465
MaeII ACGT 2 cut(s) 475, 704
MaeIII GTNAC 2 cut(s) 112, 479
MalI GATC 6 cut(s) 261, 327, 342, 396, 633, 678
MboI GATC 6 cut(s) 259, 325, 340, 394, 631, 676
MboII GAAGA 6 cut(s) 28, 226, 496, 573, 686, 754
MflI RGATCY 2 cut(s) 259, 676
MhlI GDGCHC 2 cut(s) 149, 186
MluCI AATT 3 cut(s) 274, 642, 737
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 3 cut(s) 188, 264, 396
MnlI CCTC 4 cut(s) 61, 432, 464, 596
MseI TTAA 5 cut(s) 549, 624, 659, 701, 714
MspI CCGG 1 cut(s) 486
MspR9I CCNGG 2 cut(s) 298, 723
MvaI CCWGG 2 cut(s) 298, 723
MwoI GCNNNNNNNGC 2 cut(s) 200, 519
NdeII GATC 6 cut(s) 259, 325, 340, 394, 631, 676
NlaIII CATG 2 cut(s) 557, 651
NlaIV GGNNCC 4 cut(s) 295, 370, 388, 720
NmuCI GTSAC 1 cut(s) 479
PfeI GAWTC 2 cut(s) 172, 564
PfoI TCCNGGA 1 cut(s) 721
PinAI ACCGGT 1 cut(s) 485
PkrI GCNGC 1 cut(s) 27
Ple19I CGATCG 1 cut(s) 634
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PshBI ATTAAT 1 cut(s) 549
PsiI TTATAA 1 cut(s) 597
Psp6I CCWGG 2 cut(s) 296, 721
PspGI CCWGG 2 cut(s) 296, 721
PspN4I GGNNCC 4 cut(s) 295, 370, 388, 720
PsuI RGATCY 2 cut(s) 259, 676
PvuI CGATCG 1 cut(s) 634
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SaqAI TTAA 5 cut(s) 549, 624, 659, 701, 714
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 6 cut(s) 259, 325, 340, 394, 631, 676
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 298, 723
SduI GDGCHC 2 cut(s) 149, 186
SfcI CTRYAG 1 cut(s) 568
SgrAI CRCCGGYG 1 cut(s) 485
Sse9I AATT 3 cut(s) 274, 642, 737
SsiI CCGC 2 cut(s) 248, 301
SspMI CTAG 2 cut(s) 221, 465
StyD4I CCNGG 2 cut(s) 296, 721
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 478, 707
TaqI TCGA 5 cut(s) 252, 272, 589, 630, 634
TasI AATT 3 cut(s) 274, 642, 737
TfiI GAWTC 2 cut(s) 172, 564
Tru1I TTAA 5 cut(s) 549, 624, 659, 701, 714
Tru9I TTAA 5 cut(s) 549, 624, 659, 701, 714
TscAI CASTG 3 cut(s) 149, 271, 415
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 3 cut(s) 227, 303, 750
TspRI CASTG 3 cut(s) 149, 271, 415
VspI ATTAAT 1 cut(s) 549
XapI RAATTY 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
XspI CTAG 2 cut(s) 221, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.