Thylakoidal processing peptidase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0136211 RchiOBHm_Chr5g0044941 RchiOBHm_Chr5g0063701 RchiOBHm_Chr7g0238341 |
| rosa_laevigata | RLG00000013631 |
| rosa_multiflora | Rmu_sc0009071.1_g000001 |
| rosa_rugosa | Rorug01G0294300 Rorug07G0312300 |
| rosa_samantha | Rh6BG089100 Rh6CG085300 Rh6CG093700 Rh7DG319400 Rh7DG478000 |
| rosa_wichuraiana | Rw1G006480 Rw4G004840 Rw7G031920 Rw7G037930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 175 |
| AciI | CCGC | 2 cut(s) | 26, 313 |
| AcoI | YGGCCR | 1 cut(s) | 106 |
| AcsI | RAATTY | 1 cut(s) | 40 |
| AfaI | GTAC | 1 cut(s) | 189 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 115 |
| AgsI | TTSAA | 2 cut(s) | 13, 166 |
| AjnI | CCWGG | 1 cut(s) | 114 |
| AoxI | GGCC | 1 cut(s) | 106 |
| ApoI | RAATTY | 1 cut(s) | 40 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 270 |
| AsuHPI | GGTGA | 2 cut(s) | 220, 227 |
| AxyI | CCTNAGG | 1 cut(s) | 141 |
| BanII | GRGCYC | 1 cut(s) | 115 |
| BccI | CCATC | 1 cut(s) | 295 |
| BciT130I | CCWGG | 1 cut(s) | 116 |
| BfuAI | ACCTGC | 1 cut(s) | 175 |
| Bme1390I | CCNGG | 1 cut(s) | 116 |
| BmiI | GGNNCC | 1 cut(s) | 267 |
| BmrFI | CCNGG | 1 cut(s) | 116 |
| BmsI | GCATC | 1 cut(s) | 179 |
| BsaJI | CCNNGG | 2 cut(s) | 103, 114 |
| BsaWI | WCCGGW | 1 cut(s) | 94 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 39, 69 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 115 |
| Bse21I | CCTNAGG | 1 cut(s) | 141 |
| BseBI | CCWGG | 1 cut(s) | 116 |
| BseDI | CCNNGG | 2 cut(s) | 103, 114 |
| BseGI | GGATG | 1 cut(s) | 99 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 115 |
| BseMII | CTCAG | 1 cut(s) | 132 |
| BseRI | GAGGAG | 1 cut(s) | 47 |
| BshFI | GGCC | 1 cut(s) | 108 |
| BsiSI | CCGG | 1 cut(s) | 95 |
| BslFI | GGGAC | 1 cut(s) | 320 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 115 |
| BsmFI | GGGAC | 1 cut(s) | 320 |
| BsnI | GGCC | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 1 cut(s) | 115 |
| BspACI | CCGC | 2 cut(s) | 26, 313 |
| BspANI | GGCC | 1 cut(s) | 108 |
| BspCNI | CTCAG | 1 cut(s) | 133 |
| BspLI | GGNNCC | 1 cut(s) | 267 |
| BspMI | ACCTGC | 1 cut(s) | 175 |
| BssECI | CCNNGG | 2 cut(s) | 103, 114 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| Bst2UI | CCWGG | 1 cut(s) | 116 |
| Bst4CI | ACNGT | 1 cut(s) | 80 |
| BstDEI | CTNAG | 1 cut(s) | 141 |
| BstF5I | GGATG | 1 cut(s) | 99 |
| BstNI | CCWGG | 1 cut(s) | 116 |
| BstSCI | CCNGG | 1 cut(s) | 114 |
| Bsu36I | CCTNAGG | 1 cut(s) | 141 |
| BsuRI | GGCC | 1 cut(s) | 108 |
| BtsCI | GGATG | 1 cut(s) | 99 |
| BveI | ACCTGC | 1 cut(s) | 175 |
| Csp6I | GTAC | 1 cut(s) | 188 |
| CviAII | CATG | 1 cut(s) | 191 |
| CviJI | RGCY | 5 cut(s) | 108, 113, 139, 247, 288 |
| CviKI_1 | RGCY | 5 cut(s) | 108, 113, 139, 247, 288 |
| CviQI | GTAC | 1 cut(s) | 188 |
| DdeI | CTNAG | 1 cut(s) | 141 |
| EaeI | YGGCCR | 1 cut(s) | 106 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| Eco24I | GRGCYC | 1 cut(s) | 115 |
| Eco81I | CCTNAGG | 1 cut(s) | 141 |
| EcoRII | CCWGG | 1 cut(s) | 114 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| EcoT38I | GRGCYC | 1 cut(s) | 115 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| FaeI | CATG | 1 cut(s) | 194 |
| FaiI | YATR | 6 cut(s) | 124, 155, 192, 239, 258, 291 |
| FaqI | GGGAC | 1 cut(s) | 320 |
| FatI | CATG | 1 cut(s) | 190 |
| FokI | GGATG | 1 cut(s) | 86 |
| FriOI | GRGCYC | 1 cut(s) | 115 |
| HaeIII | GGCC | 1 cut(s) | 108 |
| HapII | CCGG | 1 cut(s) | 95 |
| Hin1II | CATG | 1 cut(s) | 194 |
| HpaII | CCGG | 1 cut(s) | 95 |
| HphI | GGTGA | 2 cut(s) | 220, 227 |
| Hpy188I | TCNGA | 1 cut(s) | 151 |
| Hpy188III | TCNNGA | 1 cut(s) | 281 |
| HpyAV | CCTTC | 1 cut(s) | 278 |
| HpyCH4III | ACNGT | 1 cut(s) | 80 |
| HpyCH4V | TGCA | 1 cut(s) | 184 |
| HpyF3I | CTNAG | 1 cut(s) | 141 |
| Hsp92II | CATG | 1 cut(s) | 194 |
| LmnI | GCTCC | 1 cut(s) | 97 |
| LpnPI | CCDG | 6 cut(s) | 101, 108, 128, 153, 170, 294 |
| LweI | GCATC | 1 cut(s) | 179 |
| MaeIII | GTNAC | 1 cut(s) | 74 |
| MhlI | GDGCHC | 1 cut(s) | 115 |
| MluCI | AATT | 7 cut(s) | 40, 159, 200, 219, 232, 270, 322 |
| MmeI | TCCRAC | 1 cut(s) | 10 |
| MnlI | CCTC | 2 cut(s) | 68, 136 |
| MroXI | GAANNNNTTC | 1 cut(s) | 270 |
| MseI | TTAA | 1 cut(s) | 222 |
| MspI | CCGG | 1 cut(s) | 95 |
| MspR9I | CCNGG | 1 cut(s) | 116 |
| MvaI | CCWGG | 1 cut(s) | 116 |
| NlaIII | CATG | 1 cut(s) | 194 |
| NlaIV | GGNNCC | 1 cut(s) | 267 |
| NmeAIII | GCCGAG | 1 cut(s) | 134 |
| NmuCI | GTSAC | 1 cut(s) | 74 |
| PdmI | GAANNNNTTC | 1 cut(s) | 270 |
| Psp6I | CCWGG | 1 cut(s) | 114 |
| PspGI | CCWGG | 1 cut(s) | 114 |
| PspN4I | GGNNCC | 1 cut(s) | 267 |
| RsaI | GTAC | 1 cut(s) | 189 |
| RsaNI | GTAC | 1 cut(s) | 188 |
| SaqAI | TTAA | 1 cut(s) | 222 |
| ScrFI | CCNGG | 1 cut(s) | 116 |
| SduI | GDGCHC | 1 cut(s) | 115 |
| SetI | ASST | 5 cut(s) | 18, 120, 147, 189, 257 |
| SfaNI | GCATC | 1 cut(s) | 179 |
| Sse9I | AATT | 7 cut(s) | 40, 159, 200, 219, 232, 270, 322 |
| SsiI | CCGC | 2 cut(s) | 26, 313 |
| StyD4I | CCNGG | 1 cut(s) | 114 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 1 cut(s) | 80 |
| TasI | AATT | 7 cut(s) | 40, 159, 200, 219, 232, 270, 322 |
| Tru1I | TTAA | 1 cut(s) | 222 |
| Tru9I | TTAA | 1 cut(s) | 222 |
| TseFI | GTSAC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 1 cut(s) | 74 |
| TspDTI | ATGAA | 3 cut(s) | 111, 243, 273 |
| XapI | RAATTY | 1 cut(s) | 40 |
| XmnI | GAANNNNTTC | 1 cut(s) | 270 |