Rw7G037930

Signal peptidase, peptidase S26

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014845
Physical Location & Seq
Reverse (-)
57558898 .. 57562023
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037930.1

Sequence Viewer

Length: 546 bp
ATGTCTGTGTTCAAGGTGTGCGAAGCGGTGGGAATAGAGAATTTCACACTAAATCTCCTCCAAAAGATTGTGACTATCAGCGTTCTGCTCCGGTCATCCTTGGTCAAGCCCAGGTCTATTCCTTCCACTTCTGTGTACCTGACTGTCGATGTGAGTGATCGTGTTTTAGCTGAGAAGGTTTCATATCTCTTTAGAAAGCCTGAGGTTTCAGATATAGTAATTTTCAAGGCATCTCCAATTGAATTGCTGTTTGTTGTTTTAAAAAACTTTGTGATATGCGGTGTTGACACTTTCTCCTTGGGTATTCTGTGCTTGGGCGATGTATTTATAAAAAGAATTGTGGCCAAGGCTGCAGATTATGTTCAGGTACATGATGAGAAATTGTTGGTGAATGGTGAAATTCAAAATGAAAATTACATATTGGAGCCTTTTACCTATGAAATGGAACCAATTCTCATTCCAGAAGGCTATATCTTTGTGATGGGGGGGACAACCGCAACAACAATTTTGACTCTCATAACTGAATCGTCAACAAATAACGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S26

Protein Analysis

181

Amino Acids

20.07

Weight (kDa)

4.93

Isoelectric Point (pI)

27.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 23 - 164 2.3e-19 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AciI CCGC 3 cut(s) 26, 279, 495
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 2 cut(s) 40, 399
AfaI GTAC 2 cut(s) 137, 369
AgsI TTSAA 4 cut(s) 13, 226, 242, 404
AjnI CCWGG 1 cut(s) 110
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 2 cut(s) 40, 399
Asp700I GAANNNNTTC 1 cut(s) 450
AsuHPI GGTGA 2 cut(s) 400, 407
AxyI CCTNAGG 1 cut(s) 201
BalI TGGCCA 1 cut(s) 344
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 112
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 426, 447
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 239
BsaJI CCNNGG 4 cut(s) 99, 110, 297, 345
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 278, 308
Bse21I CCTNAGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 4 cut(s) 99, 110, 297, 345
BseGI GGATG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 162, 192
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 502
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 3 cut(s) 26, 279, 495
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 2 cut(s) 163, 193
BspLI GGNNCC 2 cut(s) 426, 447
BspMAI CTGCAG 1 cut(s) 355
BssECI CCNNGG 4 cut(s) 99, 110, 297, 345
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 3 cut(s) 99, 297, 345
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 171, 201
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 1 cut(s) 344
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 95
Csp6I GTAC 2 cut(s) 136, 368
CviAII CATG 1 cut(s) 371
CviJI RGCY 7 cut(s) 109, 170, 199, 344, 350, 427, 468
CviKI_1 RGCY 7 cut(s) 109, 170, 199, 344, 350, 427, 468
CviQI GTAC 2 cut(s) 136, 368
DdeI CTNAG 2 cut(s) 171, 201
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraI TTTAAA 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 342
Eco130I CCWWGG 3 cut(s) 99, 297, 345
Eco81I CCTNAGG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 3 cut(s) 99, 297, 345
ErhI CCWWGG 3 cut(s) 99, 297, 345
FaeI CATG 1 cut(s) 374
FaqI GGGAC 1 cut(s) 502
FatI CATG 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 344
HapII CCGG 1 cut(s) 91
Hin1II CATG 1 cut(s) 374
HincII GTYRAC 2 cut(s) 286, 531
HindII GTYRAC 2 cut(s) 286, 531
HinfI GANTC 2 cut(s) 511, 524
HpaII CCGG 1 cut(s) 91
HphI GGTGA 2 cut(s) 400, 407
Hpy166II GTNNAC 3 cut(s) 136, 286, 531
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 3 cut(s) 136, 286, 531
HpyAV CCTTC 3 cut(s) 132, 169, 458
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 2 cut(s) 171, 201
Hsp92II CATG 1 cut(s) 374
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 93, 424
LpnPI CCDG 7 cut(s) 97, 104, 124, 152, 213, 350, 474
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MfeI CAATTG 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 344
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 1 cut(s) 505
MnlI CCTC 2 cut(s) 68, 196
Mox20I TGGCCA 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 450
MscI TGGCCA 1 cut(s) 344
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 344
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 112
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 374
NlaIV GGNNCC 2 cut(s) 426, 447
NmuCI GTSAC 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 524
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PsiI TTATAA 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 426, 447
PstI CTGCAG 1 cut(s) 355
RsaI GTAC 2 cut(s) 137, 369
RsaNI GTAC 2 cut(s) 136, 368
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 1 cut(s) 157
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 112
SetI ASST 8 cut(s) 18, 116, 141, 172, 180, 207, 369, 437
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 131
SsiI CCGC 3 cut(s) 26, 279, 495
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 3 cut(s) 99, 297, 345
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 147
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 171, 423, 453
XapI RAATTY 2 cut(s) 40, 399
XmnI GAANNNNTTC 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.