Rw1G006480

Signal peptidase, peptidase S26

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0014845
Physical Location & Seq
Reverse (-)
13310106 .. 13312779
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G006480.1

Sequence Viewer

Length: 612 bp
ATGTACCCTACTCTTGATGTGGGTGATTGTGTTTTAGCTGAGAAGGTTTCATATCTCTTTAGAAAGCCTGAGGCGGGGGACCTAGGGATTAGTCGGGTCAAAGACTCGGATACCCTAGTCTCAAAAAAAAAAAACATTTTCTCCTTGGGTATTCTGTGCAATATGGAGGAAATTGGCTTTAGCTCGGGCGATGTATTTATAAAAAGAATTGTGGCCAGGTGTGGAGATTATGTTGAGGTACATGATGGGAAATTGTTGGTGAATGGTGAAATTGAAAATGAAAATTACATATTGGAGCCTCTTGCCTATGAAATGGAACCAATTGTTCAATTACACTTACGAGGTCTGTGTTGCCTGTTTTGCTTGATTCTGCTGCTCATTCCAGAAGGCTATGTCTCTGTGATGGGGGACAACCGCAACAACACGATTAAACTTCATTCTATTGGCATGGATTTGTTTGCTTATAGGGTCATCATACAATTACTGCTTTTGGCTGAATATTCACTGAGGGGTACACATGCCAAAACAAAAACATTGCAATTTAGTCTGGGGCAATTGCAAATTACAAGTGCTAAACTAGAAAAAAGGATCGAAAATGTGGGTTGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S26

Protein Analysis

203

Amino Acids

22.76

Weight (kDa)

5.84

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 1 - 141 3.7e-15 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AciI CCGC 2 cut(s) 74, 415
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 1 cut(s) 213
AfaI GTAC 3 cut(s) 5, 240, 514
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 275, 329
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 2 cut(s) 38, 183
AluI AGCT 2 cut(s) 38, 183
Alw26I GTCTC 2 cut(s) 124, 400
AlwI GGATC 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 373
AspA2I CCTAGG 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 35, 271, 278
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 79
AvrII CCTAGG 1 cut(s) 82
AxyI CCTNAGG 1 cut(s) 69
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 1 cut(s) 215
BbvI GCAGC 1 cut(s) 360
BccI CCATC 2 cut(s) 239, 397
BciT130I CCWGG 1 cut(s) 217
BciVI GTATCC 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 124, 400
BfaI CTAG 3 cut(s) 83, 116, 578
BfuI GTATCC 1 cut(s) 103
BisI GCNGC 1 cut(s) 374
BlnI CCTAGG 1 cut(s) 82
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 3 cut(s) 80, 297, 318
BmrFI CCNGG 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 82, 144
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse21I CCTNAGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 533
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 82, 144
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 3 cut(s) 30, 60, 497
BseXI GCAGC 1 cut(s) 360
BshFI GGCC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 184
BslFI GGGAC 2 cut(s) 92, 422
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 124, 400
BsmFI GGGAC 2 cut(s) 92, 422
BsnI GGCC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 184
Bsp143I GATC 1 cut(s) 588
BspACI CCGC 2 cut(s) 74, 415
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 3 cut(s) 31, 61, 498
BspLI GGNNCC 3 cut(s) 80, 297, 318
BspPI GGATC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 82, 144
BssMI GATC 1 cut(s) 588
BssT1I CCWWGG 2 cut(s) 82, 144
Bst2UI CCWGG 1 cut(s) 217
BstDEI CTNAG 3 cut(s) 39, 69, 506
BstKTI GATC 1 cut(s) 591
BstMAI GTCTC 2 cut(s) 124, 400
BstMBI GATC 1 cut(s) 588
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 360
Bsu36I CCTNAGG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 215
BtgZI GCGATG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 3 cut(s) 4, 239, 513
CviAII CATG 3 cut(s) 242, 448, 518
CviJI RGCY 8 cut(s) 38, 67, 177, 183, 215, 298, 390, 494
CviKI_1 RGCY 8 cut(s) 38, 67, 177, 183, 215, 298, 390, 494
CviQI GTAC 3 cut(s) 4, 239, 513
DdeI CTNAG 3 cut(s) 39, 69, 506
DpnI GATC 1 cut(s) 590
DpnII GATC 1 cut(s) 588
EaeI YGGCCR 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 82, 144
Eco47I GGWCC 1 cut(s) 79
Eco81I CCTNAGG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 2 cut(s) 82, 144
ErhI CCWWGG 2 cut(s) 82, 144
FaeI CATG 3 cut(s) 245, 451, 521
FaqI GGGAC 2 cut(s) 92, 422
FatI CATG 3 cut(s) 241, 447, 517
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 3 cut(s) 83, 116, 578
GluI GCNGC 1 cut(s) 374
HaeIII GGCC 1 cut(s) 215
Hin1II CATG 3 cut(s) 245, 451, 521
HinfI GANTC 2 cut(s) 104, 367
HphI GGTGA 3 cut(s) 35, 271, 278
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 14, 383
Hpy8I GTNNAC 1 cut(s) 515
HpyAV CCTTC 2 cut(s) 37, 380
HpyCH4V TGCA 3 cut(s) 159, 538, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 3 cut(s) 39, 69, 506
Hsp92II CATG 3 cut(s) 245, 451, 521
Kzo9I GATC 1 cut(s) 588
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 6 cut(s) 81, 202, 229, 368, 396, 533
Lsp1109I GCAGC 1 cut(s) 360
MaeI CTAG 3 cut(s) 83, 116, 578
MalI GATC 1 cut(s) 590
MboI GATC 1 cut(s) 588
MfeI CAATTG 2 cut(s) 321, 554
MlsI TGGCCA 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 6 cut(s) 64, 160, 229, 309, 335, 501
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 217
MunI CAATTG 2 cut(s) 321, 554
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 360
NdeII GATC 1 cut(s) 588
NlaIII CATG 3 cut(s) 245, 451, 521
NlaIV GGNNCC 3 cut(s) 80, 297, 318
NspI RCATGY 1 cut(s) 521
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 79
PsiI TTATAA 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 80, 297, 318
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
RsaI GTAC 3 cut(s) 5, 240, 514
RsaNI GTAC 3 cut(s) 4, 239, 513
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 1 cut(s) 588
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 217
SetI ASST 7 cut(s) 40, 48, 84, 185, 221, 240, 346
SinI GGWCC 1 cut(s) 79
SsiI CCGC 2 cut(s) 74, 415
SspI AATATT 1 cut(s) 500
SspMI CTAG 3 cut(s) 83, 116, 578
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 2 cut(s) 82, 144
TaqI TCGA 1 cut(s) 591
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 510
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 4 cut(s) 39, 294, 324, 425
TspRI CASTG 1 cut(s) 510
VpaK11BI GGWCC 1 cut(s) 79
XceI RCATGY 1 cut(s) 521
XmaJI CCTAGG 1 cut(s) 82
XspI CTAG 3 cut(s) 83, 116, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.