Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014845

Physical Location & Seq

Genomic Coordinates Reverse (-)

68350423 .. 68352739

Gene Structure 2317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG478000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGTTTTTAATTCTGAATTGCTGTTTGTTGTTTTTAAAAACTTTGTGATATGTGGTGTGGACCCTTTCTCCTTGGGTATTCTGTGCTCGGGCGATGTATTTATAAAAAGAATTGTGGCCAAGGCTGCAGATTATGTTCAGGTACATGATGAGAAATTGTTGGTGAATGGTGAAATTCAAAGTGAAAATTACATATTGGAGCCTTTTACCTATGAAATGGAACCAATTCTCATTCCAGAAGGCTATATCTTTGTGATGGGGGACAACCGCAACAACAATTTTGACTCTCATAACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

99

Amino Acids

11.38

Weight (kDa)

4.42

Isoelectric Point (pI)

29.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S26	PF10502	31 - 99	5.5e-14	Signal peptidase, peptidase S26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014845)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0136211 RchiOBHm_Chr5g0044941 RchiOBHm_Chr5g0063701 RchiOBHm_Chr7g0238341
rosa_laevigata	RLG00000013631
rosa_multiflora	Rmu_sc0009071.1_g000001
rosa_rugosa	Rorug01G0294300 Rorug07G0312300
rosa_samantha	Rh6BG089100 Rh6CG085300 Rh6CG093700 Rh7DG319400 Rh7DG478000
rosa_wichuraiana	Rw1G006480 Rw4G004840 Rw7G031920 Rw7G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AciI	CCGC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	174
AfaI	GTAC	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	175, 182
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	63, 201, 222
BsaJI	CCNNGG	2 cut(s)	72, 120
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bse1I	ACTGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	72, 120
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	3 cut(s)	63, 201, 222
BspMAI	CTGCAG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	72, 120
BssT1I	CCWWGG	2 cut(s)	72, 120
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	119
BtgZI	GCGATG	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	4 cut(s)	119, 125, 202, 243
CviKI_1	RGCY	4 cut(s)	119, 125, 202, 243
CviQI	GTAC	1 cut(s)	143
DraI	TTTAAA	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	72, 120
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	88
EcoT14I	CCWWGG	2 cut(s)	72, 120
ErhI	CCWWGG	2 cut(s)	72, 120
FaeI	CATG	1 cut(s)	149
FaiI	YATR	8 cut(s)	52, 104, 135, 147, 194, 213, 246, 291
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	149
HinfI	GANTC	1 cut(s)	284
HphI	GGTGA	2 cut(s)	175, 182
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	3 cut(s)	125, 249, 280
Lsp1109I	GCAGC	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	8 cut(s)	10, 17, 111, 155, 174, 187, 225, 277
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	278
Mox20I	TGGCCA	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	2 cut(s)	9, 36
Msp20I	TGGCCA	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	125
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	3 cut(s)	63, 201, 222
PdmI	GAANNNNTTC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	104
PspN4I	GGNNCC	3 cut(s)	63, 201, 222
PspPI	GGNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	9, 36
SatI	GCNGC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	2 cut(s)	144, 212
SfcI	CTRYAG	1 cut(s)	126
SgeI	CNNG	7 cut(s)	85, 100, 102, 133, 152, 158, 248
SinI	GGWCC	1 cut(s)	61
Sse9I	AATT	8 cut(s)	10, 17, 111, 155, 174, 187, 225, 277
SsiI	CCGC	1 cut(s)	268
StyI	CCWWGG	2 cut(s)	72, 120
TasI	AATT	8 cut(s)	10, 17, 111, 155, 174, 187, 225, 277
Tru1I	TTAA	2 cut(s)	9, 36
Tru9I	TTAA	2 cut(s)	9, 36
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.