Rh7DG319400

Thylakoidal processing peptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014845
Physical Location & Seq
Reverse (-)
37986762 .. 37987506
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG319400.1

Sequence Viewer

Length: 285 bp
ATGTCTGTGTTCAAGGTGTGCGAAGCGGTGGGAATAGAGAATTTCACACTAAATCTCCTCCAAAAGATTGTGACTATCAGCGTTCTGCTCCGGTCATCCTTGGCCGAGCCCAGGTCTATTCCTTCCACTTCTGTGTACCTGACTGTCGATGTGAGTGATCGTGTTTTAGCTAAGAAGGTTTCATATCTCTTTAGAAAGCCTGAGGTTTCAGATATAGTAATTTTCAAGGCATCTCCAATGTTGCAGAATTGTGGCCAAGGCTGCAGATTATGTTCAGGTACATGA

Protein Analysis

94

Amino Acids

10.31

Weight (kDa)

9.07

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 22 - 78 7.1e-09 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 26
AcoI YGGCCR 2 cut(s) 102, 253
AcsI RAATTY 1 cut(s) 40
AfaI GTAC 2 cut(s) 137, 280
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 2 cut(s) 13, 226
AjnI CCWGG 1 cut(s) 110
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AoxI GGCC 2 cut(s) 102, 253
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 40
AxyI CCTNAGG 1 cut(s) 201
BalI TGGCCA 1 cut(s) 255
BanII GRGCYC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 112
BfmI CTRYAG 1 cut(s) 262
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 99, 110, 256
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse21I CCTNAGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 99, 110, 256
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 248
BshFI GGCC 2 cut(s) 104, 255
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 111
BsnI GGCC 2 cut(s) 104, 255
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 26
BspANI GGCC 2 cut(s) 104, 255
BspCNI CTCAG 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 99, 110, 256
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 2 cut(s) 99, 256
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 171, 201
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 104, 255
BtsCI GGATG 1 cut(s) 95
Csp6I GTAC 2 cut(s) 136, 279
CviAII CATG 1 cut(s) 282
CviJI RGCY 6 cut(s) 104, 109, 170, 199, 255, 261
CviKI_1 RGCY 6 cut(s) 104, 109, 170, 199, 255, 261
CviQI GTAC 2 cut(s) 136, 279
DdeI CTNAG 2 cut(s) 171, 201
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 102, 253
Eco130I CCWWGG 2 cut(s) 99, 256
Eco24I GRGCYC 1 cut(s) 111
Eco81I CCTNAGG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 2 cut(s) 99, 256
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 99, 256
FaeI CATG 1 cut(s) 285
FaiI YATR 4 cut(s) 184, 215, 271, 283
FatI CATG 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 262
HaeIII GGCC 2 cut(s) 104, 255
HapII CCGG 1 cut(s) 91
Hin1II CATG 1 cut(s) 285
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 132, 169
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 244, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
HpyF3I CTNAG 2 cut(s) 171, 201
Hsp92II CATG 1 cut(s) 285
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 6 cut(s) 97, 104, 124, 152, 213, 261
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 255
MluCI AATT 3 cut(s) 40, 219, 247
MluNI TGGCCA 1 cut(s) 255
MnlI CCTC 2 cut(s) 68, 196
Mox20I TGGCCA 1 cut(s) 255
MscI TGGCCA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 255
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 261
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 285
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 131
PkrI GCNGC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PstI CTGCAG 1 cut(s) 266
RsaI GTAC 2 cut(s) 137, 280
RsaNI GTAC 2 cut(s) 136, 279
RseI CAYNNNNRTG 1 cut(s) 131
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 111
SetI ASST 7 cut(s) 18, 116, 141, 172, 180, 207, 280
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 3 cut(s) 40, 219, 247
SsiI CCGC 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 2 cut(s) 99, 256
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 147
TasI AATT 3 cut(s) 40, 219, 247
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 171
XapI RAATTY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.