Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0014845

Physical Location & Seq

Genomic Coordinates Forward (+)

41005363 .. 41009516

Gene Structure 4154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0294300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1923 bp

ATGAGCAGCGCCGGCATCGGATCCCCCGCCACAATGTCCCACCGCACCACCCAAACGACGTCGTCGCTCCCCCTCGTCGTCACTCTCAACTGCATCGACGACTTCGCCATGGAGCAAGACTGCCTGTCCGGCGTCGCCGCCGTCGAGCACGTCCCTCTCAGCCGCTTGGCCGACGGCAGGATCGAGTCCGCCTCCGCTGTGCTCCTCCAGTCCCTCGCGTACCTCCCACGCGCCGCCCAGCGTCGTCTTCGTCCTTACCAGCTCATCCTCTGCCTTGGGTCTGCTGACCGTGCCACCGACTCCGCTCTCGCCGCCGACCTCGGGCTCCGGCTCGTCCACGTGGACGCCTCCCGCGCCGAGGAGATCGCCGATACGGTTATGGCGCTGTTTCTAGGGTTGCTGAGGAGGACGCACTTGCTCTCGCGCCAAACGCTTTCGGCTTCGGGGTGGCTTGGTTCGGTTCAGCCGCTTTGCCGTGGGATGAGGCGGTGCCGGGGCTTGGTTTTGGGGATTATTGGTAGATCTGCGGCGGCGAGGTCTCTGGCTACTAGAAGCTTGGCCTTCAAGATCAGTGTGCTGTATTTTGATGTAGAGGTGAACGGAAAAGTCAGTAGGTCGTATGGCTTTCCTTCTGCTGCCCGAAAAATGGATACTCTAAATGACTTACTTGCTGCAAGTGACCTCATTTCGCTTCATTGTGCTCTGACAAATGAAACAATTCAGATTCTGAATGCTGAATGTTTACAGCACGTAAAGCCTGGAGCATTTCTTGTAAACACGGGGAGCAGTCAACTGTTGGATGATTGTTTTGTGAAACAGCTTTTGATTGATGGAACTTTAGCTGGGTGTGCTTTGGATGGTGCTGAAGGGCCGCAATGGATGGAAGCATGGGTAAAGGAGATGCCCAATGTGTTGATACTTCCGCACAGTGCAGATTATAGTGAAGAAGTATGGCTGGAGATAAGGGATAAAGCAATATCTGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCTGATGAGGATGAGGAGGAAAGTGAAATAGGCGATGAAAATGAACACTCTGATAAACTGGAGCAAGAAAATCCCTTACAGCTGACCCTTGTTCAGCAATTAACTGATGTTAGTCATGCAAGTCCAGAAAGCTCCCTGCATAAAGAAACCAATCAATCCAAGGAGTCTCCTAGCCAGCAAGGTTCGGGTTTGTCTCAAAATTCAACTACTCGGTCCGATGGAAGACGAAGTAGATCAGGTAAGAAAGCCAAAAAGAGGCACACACATCAGAAATCCCAGAAGAAATCAGATGAACCTTCACTAGCAAAAGAAAGTACCTCACAGCGGGAGGAAGATACGACTATGAGTGGCACAGATCAAGCGTTAAGTTCCAGTTCTCGGTTTGCTTCCCCCGAAGACTCAAGAAGTAGGAAAACACCTATAGAATCATTGCAAGAGTCGCCTTCCGACCAGCTTCTAAAATCTAGAAAGAGGCTGAGTGGAAAGCCTGGTGAATTGTTAAAGGATGGCTATGTTGTAGCTCTATATGCAAGAGATAGCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATGTCAAATGTAACGAAAAGAGATCCTGCAGTTCAGTTCCTCATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGAATGGAATTTGTATTTGCAAGTCACAGTTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGGACGAGTGTAGGCTGGTTAACTGTAGAAATCCGCTGGCTGTTTTGGATGTAAGCATCGAGATACTGGCCACTGTAGGCGAAGATGATGGGGTAACACGCTGGCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

640

Amino Acids

70.09

Weight (kDa)

5.94

Isoelectric Point (pI)

61.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh_C	PF02826	127 - 311	1.8e-27	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014845)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0136211 RchiOBHm_Chr5g0044941 RchiOBHm_Chr5g0063701 RchiOBHm_Chr7g0238341
rosa_laevigata	RLG00000013631
rosa_multiflora	Rmu_sc0009071.1_g000001
rosa_rugosa	Rorug01G0294300 Rorug07G0312300
rosa_samantha	Rh6BG089100 Rh6CG085300 Rh6CG093700 Rh7DG319400 Rh7DG478000
rosa_wichuraiana	Rw1G006480 Rw4G004840 Rw7G031920 Rw7G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	489
AccBSI	CCGCTC	1 cut(s)	305
AccII	CGCG	4 cut(s)	218, 231, 354, 424
AclWI	GGATC	4 cut(s)	15, 28, 188, 1643
AcoI	YGGCCR	2 cut(s)	168, 1878
AcsI	RAATTY	2 cut(s)	1228, 1751
AcuI	CTGAAG	1 cut(s)	885
AcvI	CACGTG	1 cut(s)	340
AcyI	GRCGYC	3 cut(s)	59, 132, 345
AfaI	GTAC	2 cut(s)	221, 1345
AfiI	CCNNNNNNNGG	8 cut(s)	177, 321, 358, 499, 646, 1284, 1353, 1407
AgsI	TTSAA	2 cut(s)	565, 1233
AhdI	GACNNNNNGTC	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	757, 1516
AluBI	AGCT	8 cut(s)	262, 555, 820, 842, 1111, 1161, 1483, 1550
AluI	AGCT	8 cut(s)	262, 555, 820, 842, 1111, 1161, 1483, 1550
Alw21I	GWGCWC	3 cut(s)	150, 204, 703
Alw26I	GTCTC	3 cut(s)	543, 1200, 1227
AlwI	GGATC	4 cut(s)	15, 28, 188, 1643
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	4 cut(s)	168, 558, 869, 1878
ApeKI	GCWGC	4 cut(s)	6, 635, 671, 1712
ApoI	RAATTY	2 cut(s)	1228, 1751
Asp700I	GAANNNNTTC	1 cut(s)	717
AspLEI	GCGC	5 cut(s)	11, 233, 356, 385, 426
AspS9I	GGNCC	2 cut(s)	869, 1242
AsuC2I	CCSGG	2 cut(s)	494, 1572
AsuHPI	GGTGA	2 cut(s)	607, 1532
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	1242
BalI	TGGCCA	1 cut(s)	1880
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	1672, 1704
BbrPI	CACGTG	1 cut(s)	340
BbsI	GAAGAC	4 cut(s)	239, 1258, 1431, 1568
Bbv12I	GWGCWC	3 cut(s)	150, 204, 703
BbvCI	CCTCAGC	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	18, 622, 658, 1699
BccI	CCATC	7 cut(s)	824, 851, 874, 998, 1241, 1529, 1892
BceAI	ACGGC	3 cut(s)	125, 190, 459
BciT130I	CCWGG	2 cut(s)	759, 1518
BciVI	GTATCC	2 cut(s)	643, 1681
BcnI	CCSGG	2 cut(s)	494, 1572
BcoDI	GTCTC	3 cut(s)	543, 1200, 1227
BfaI	CTAG	6 cut(s)	392, 549, 1200, 1331, 1494, 1619
BfmI	CTRYAG	4 cut(s)	1449, 1653, 1834, 1884
BfoI	RGCGCY	2 cut(s)	12, 386
BfuI	GTATCC	2 cut(s)	643, 1681
BglI	GCCNNNNNGGC	1 cut(s)	129
BglII	AGATCT	1 cut(s)	521
Bme1390I	CCNGG	4 cut(s)	494, 759, 1518, 1572
Bme18I	GGWCC	1 cut(s)	1242
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	869, 1242
BmiI	GGNNCC	4 cut(s)	22, 326, 491, 1616
BmrFI	CCNGG	4 cut(s)	494, 759, 1518, 1572
BmsI	GCATC	4 cut(s)	24, 102, 891, 1875
BpiI	GAAGAC	4 cut(s)	239, 1258, 1431, 1568
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	4 cut(s)	191, 780, 977, 1109
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	1414
BpuMI	CCSGG	2 cut(s)	494, 1572
BsaAI	YACGTR	2 cut(s)	340, 751
BsaHI	GRCGYC	3 cut(s)	59, 132, 345
BsaI	GGTCTC	1 cut(s)	543
BsaJI	CCNNGG	8 cut(s)	108, 274, 319, 357, 475, 493, 1188, 1570
Bsc4I	CCNNNNNNNGG	8 cut(s)	177, 321, 358, 499, 646, 1284, 1353, 1407
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	4 cut(s)	208, 1092, 1401, 1881
Bse3DI	GCAATG	2 cut(s)	881, 1457
BseBI	CCWGG	2 cut(s)	759, 1518
BseDI	CCNNGG	8 cut(s)	108, 274, 319, 357, 475, 493, 1188, 1570
BseGI	GGATG	9 cut(s)	264, 486, 805, 862, 885, 1045, 1540, 1800, 1864
BseLI	CCNNNNNNNGG	8 cut(s)	177, 321, 358, 499, 646, 1284, 1353, 1407
BseMI	GCAATG	2 cut(s)	881, 1457
BseMII	CTCAG	3 cut(s)	172, 392, 1496
BseNI	ACTGG	4 cut(s)	208, 1092, 1401, 1881
BseRI	GAGGAG	4 cut(s)	194, 374, 418, 1058
BseXI	GCAGC	4 cut(s)	18, 622, 658, 1699
BseYI	CCCAGC	2 cut(s)	237, 842
BsgI	GTGCAG	1 cut(s)	951
Bsh1236I	CGCG	4 cut(s)	218, 231, 354, 424
BshFI	GGCC	4 cut(s)	170, 560, 871, 1880
BshNI	GGYRCC	1 cut(s)	489
BsiHKAI	GWGCWC	3 cut(s)	150, 204, 703
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	5 cut(s)	12, 129, 328, 493, 1572
BslFI	GGGAC	3 cut(s)	22, 137, 196
BslI	CCNNNNNNNGG	8 cut(s)	177, 321, 358, 499, 646, 1284, 1353, 1407
BsmAI	GTCTC	3 cut(s)	543, 1200, 1227
BsmFI	GGGAC	3 cut(s)	22, 137, 196
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	4 cut(s)	170, 560, 871, 1880
Bso31I	GGTCTC	1 cut(s)	543
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	4 cut(s)	150, 204, 327, 703
Bsp143I	GATC	9 cut(s)	20, 180, 363, 521, 567, 1262, 1384, 1648, 1703
Bsp19I	CCATGG	1 cut(s)	108
BspANI	GGCC	4 cut(s)	170, 560, 871, 1880
BspCNI	CTCAG	3 cut(s)	171, 393, 1497
BspFNI	CGCG	4 cut(s)	218, 231, 354, 424
BspLI	GGNNCC	4 cut(s)	22, 326, 491, 1616
BspMAI	CTGCAG	1 cut(s)	1657
BspPI	GGATC	4 cut(s)	15, 28, 188, 1643
BspT107I	GGYRCC	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	543
BsrBI	CCGCTC	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	881, 1457
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	4 cut(s)	208, 1092, 1401, 1881
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	8 cut(s)	108, 274, 319, 357, 475, 493, 1188, 1570
BssMI	GATC	9 cut(s)	20, 180, 363, 521, 567, 1262, 1384, 1648, 1703
BssNI	GRCGYC	3 cut(s)	59, 132, 345
BssT1I	CCWWGG	3 cut(s)	108, 274, 1188
Bst2UI	CCWGG	2 cut(s)	759, 1518
Bst4CI	ACNGT	7 cut(s)	290, 376, 795, 929, 1772, 1835, 1885
BstACI	GRCGYC	3 cut(s)	59, 132, 345
BstBAI	YACGTR	2 cut(s)	340, 751
BstC8I	GCNNGC	4 cut(s)	13, 1205, 1848, 1913
BstDEI	CTNAG	3 cut(s)	158, 401, 1505
BstDSI	CCRYGG	2 cut(s)	108, 475
BstF5I	GGATG	9 cut(s)	264, 486, 805, 862, 885, 1045, 1540, 1800, 1864
BstFNI	CGCG	4 cut(s)	218, 231, 354, 424
BstH2I	RGCGCY	2 cut(s)	12, 386
BstHHI	GCGC	5 cut(s)	11, 233, 356, 385, 426
BstKTI	GATC	9 cut(s)	23, 183, 366, 524, 570, 1265, 1387, 1651, 1706
BstMAI	GTCTC	3 cut(s)	543, 1200, 1227
BstMBI	GATC	9 cut(s)	20, 180, 363, 521, 567, 1262, 1384, 1648, 1703
BstNI	CCWGG	2 cut(s)	759, 1518
BstSCI	CCNGG	4 cut(s)	492, 757, 1516, 1570
BstSFI	CTRYAG	4 cut(s)	1449, 1653, 1834, 1884
BstUI	CGCG	4 cut(s)	218, 231, 354, 424
BstV1I	GCAGC	4 cut(s)	18, 622, 658, 1699
BstV2I	GAAGAC	4 cut(s)	239, 1258, 1431, 1568
BstX2I	RGATCY	3 cut(s)	20, 521, 1648
BstYI	RGATCY	3 cut(s)	20, 521, 1648
BsuI	GTATCC	2 cut(s)	643, 1681
BsuRI	GGCC	4 cut(s)	170, 560, 871, 1880
BtgI	CCRYGG	2 cut(s)	108, 475
BtgZI	GCGATG	1 cut(s)	1077
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	9 cut(s)	264, 486, 805, 862, 885, 1045, 1540, 1800, 1864
BtsIMutI	CAGTG	3 cut(s)	577, 934, 1881
Cac8I	GCNNGC	4 cut(s)	13, 1205, 1848, 1913
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	5 cut(s)	11, 233, 356, 385, 426
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	869, 1242
CpoI	CGGWCCG	1 cut(s)	1242
CseI	GACGC	4 cut(s)	121, 230, 353, 418
Csp6I	GTAC	2 cut(s)	220, 1344
CspI	CGGWCCG	1 cut(s)	1242
CviAII	CATG	5 cut(s)	109, 888, 1145, 1580, 1627
CviQI	GTAC	2 cut(s)	220, 1344
DdeI	CTNAG	3 cut(s)	158, 401, 1505
DpnI	GATC	9 cut(s)	22, 182, 365, 523, 569, 1264, 1386, 1650, 1705
DpnII	GATC	9 cut(s)	20, 180, 363, 521, 567, 1262, 1384, 1648, 1703
DriI	GACNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	2 cut(s)	168, 1878
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	178
Eco130I	CCWWGG	3 cut(s)	108, 274, 1188
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	1242
Eco57I	CTGAAG	1 cut(s)	885
Eco72I	CACGTG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	757, 1516
EcoT14I	CCWWGG	3 cut(s)	108, 274, 1188
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	3 cut(s)	108, 274, 1188
FaeI	CATG	5 cut(s)	112, 891, 1148, 1583, 1630
FaqI	GGGAC	3 cut(s)	22, 137, 196
FatI	CATG	5 cut(s)	108, 887, 1144, 1579, 1626
FauI	CCCGC	3 cut(s)	34, 359, 1347
FokI	GGATG	9 cut(s)	251, 493, 812, 869, 892, 1052, 1547, 1807, 1871
FriOI	GRGCYC	1 cut(s)	327
FspBI	CTAG	6 cut(s)	392, 549, 1200, 1331, 1494, 1619
GlaI	GCGC	5 cut(s)	10, 232, 355, 384, 425
GsaI	CCCAGC	2 cut(s)	241, 846
GsuI	CTGGAG	4 cut(s)	191, 780, 977, 1109
HaeII	RGCGCY	2 cut(s)	12, 386
HaeIII	GGCC	4 cut(s)	170, 560, 871, 1880
HapII	CCGG	5 cut(s)	12, 129, 328, 493, 1572
HgaI	GACGC	4 cut(s)	121, 230, 353, 418
HhaI	GCGC	5 cut(s)	11, 233, 356, 385, 426
Hin1I	GRCGYC	3 cut(s)	59, 132, 345
Hin1II	CATG	5 cut(s)	112, 891, 1148, 1583, 1630
Hin6I	GCGC	5 cut(s)	9, 231, 354, 383, 424
HinP1I	GCGC	5 cut(s)	9, 231, 354, 383, 424
HincII	GTYRAC	2 cut(s)	791, 1831
HindII	GTYRAC	2 cut(s)	791, 1831
HindIII	AAGCTT	1 cut(s)	553
HinfI	GANTC	7 cut(s)	185, 299, 724, 1193, 1427, 1454, 1466
HpaI	GTTAAC	1 cut(s)	1831
HpaII	CCGG	5 cut(s)	12, 129, 328, 493, 1572
HphI	GGTGA	2 cut(s)	607, 1532
Hpy166II	GTNNAC	7 cut(s)	337, 343, 598, 743, 775, 791, 1831
Hpy188III	TCNNGA	6 cut(s)	565, 1154, 1431, 1494, 1811, 1870
Hpy8I	GTNNAC	7 cut(s)	337, 343, 598, 743, 775, 791, 1831
Hpy99I	CGWCG	9 cut(s)	61, 64, 67, 80, 101, 137, 146, 176, 246
HpyAV	CCTTC	6 cut(s)	571, 639, 860, 1335, 1482, 1796
HpyCH4III	ACNGT	7 cut(s)	290, 376, 795, 929, 1772, 1835, 1885
HpyCH4IV	ACGT	4 cut(s)	59, 150, 339, 750
HpyF3I	CTNAG	3 cut(s)	158, 401, 1505
HpySE526I	ACGT	4 cut(s)	59, 150, 339, 750
Hsp92I	GRCGYC	3 cut(s)	59, 132, 345
Hsp92II	CATG	5 cut(s)	112, 891, 1148, 1583, 1630
HspAI	GCGC	5 cut(s)	9, 231, 354, 383, 424
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
KspAI	GTTAAC	1 cut(s)	1831
Kzo9I	GATC	9 cut(s)	20, 180, 363, 521, 567, 1262, 1384, 1648, 1703
LmnI	GCTCC	8 cut(s)	72, 112, 207, 330, 761, 783, 1090, 1166
Lsp1109I	GCAGC	4 cut(s)	18, 622, 658, 1699
LweI	GCATC	4 cut(s)	24, 102, 891, 1875
MaeI	CTAG	6 cut(s)	392, 549, 1200, 1331, 1494, 1619
MaeII	ACGT	4 cut(s)	59, 150, 339, 750
MaeIII	GTNAC	5 cut(s)	79, 677, 1636, 1766, 1903
MalI	GATC	9 cut(s)	22, 182, 365, 523, 569, 1264, 1386, 1650, 1705
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	9 cut(s)	20, 180, 363, 521, 567, 1262, 1384, 1648, 1703
MflI	RGATCY	3 cut(s)	20, 521, 1648
MhlI	GDGCHC	4 cut(s)	150, 204, 327, 703
MlsI	TGGCCA	1 cut(s)	1880
MluCI	AATT	5 cut(s)	717, 1127, 1228, 1523, 1751
MluNI	TGGCCA	1 cut(s)	1880
MlyI	GAGTC	5 cut(s)	194, 293, 1202, 1421, 1475
MmeI	TCCRAC	4 cut(s)	777, 1500, 1772, 1779
Mox20I	TGGCCA	1 cut(s)	1880
MroNI	GCCGGC	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	1880
MseI	TTAA	5 cut(s)	1130, 1394, 1529, 1599, 1830
Msp20I	TGGCCA	1 cut(s)	1880
MspA1I	CMGCKG	4 cut(s)	197, 1111, 1354, 1846
MspI	CCGG	5 cut(s)	12, 129, 328, 493, 1572
MspR9I	CCNGG	4 cut(s)	494, 759, 1518, 1572
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	2 cut(s)	759, 1518
MvnI	CGCG	4 cut(s)	218, 231, 354, 424
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	2 cut(s)	494, 1572
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	9 cut(s)	20, 180, 363, 521, 567, 1262, 1384, 1648, 1703
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	5 cut(s)	112, 891, 1148, 1583, 1630
NlaIV	GGNNCC	4 cut(s)	22, 326, 491, 1616
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	3 cut(s)	79, 677, 1766
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 180
PctI	GAATGC	1 cut(s)	736
PdiI	GCCGGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	724, 1454
PflFI	GACNNNGTC	1 cut(s)	61
PleI	GAGTC	5 cut(s)	193, 293, 1201, 1421, 1474
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	5 cut(s)	193, 293, 1201, 1421, 1474
Ppu21I	YACGTR	2 cut(s)	340, 751
Psp6I	CCWGG	2 cut(s)	757, 1516
PspCI	CACGTG	1 cut(s)	340
PspFI	CCCAGC	2 cut(s)	237, 842
PspGI	CCWGG	2 cut(s)	757, 1516
PspN4I	GGNNCC	4 cut(s)	22, 326, 491, 1616
PspPI	GGNCC	2 cut(s)	869, 1242
PstI	CTGCAG	1 cut(s)	1657
PstNI	CAGNNNCTG	1 cut(s)	727
PsuI	RGATCY	3 cut(s)	20, 521, 1648
PsyI	GACNNNGTC	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	1111
RsaI	GTAC	2 cut(s)	221, 1345
RsaNI	GTAC	2 cut(s)	220, 1344
Rsr2I	CGGWCCG	1 cut(s)	1242
RsrII	CGGWCCG	1 cut(s)	1242
SaqAI	TTAA	5 cut(s)	1130, 1394, 1529, 1599, 1830
Sau3AI	GATC	9 cut(s)	20, 180, 363, 521, 567, 1262, 1384, 1648, 1703
Sau96I	GGNCC	2 cut(s)	869, 1242
SchI	GAGTC	5 cut(s)	194, 293, 1202, 1421, 1475
ScrFI	CCNGG	4 cut(s)	494, 759, 1518, 1572
SduI	GDGCHC	4 cut(s)	150, 204, 327, 703
SfaNI	GCATC	4 cut(s)	24, 102, 891, 1875
SfcI	CTRYAG	4 cut(s)	1449, 1653, 1834, 1884
SinI	GGWCC	1 cut(s)	1242
SmlI	CTYRAG	1 cut(s)	1429
SmoI	CTYRAG	1 cut(s)	1429
Sse9I	AATT	5 cut(s)	717, 1127, 1228, 1523, 1751
SspMI	CTAG	6 cut(s)	392, 549, 1200, 1331, 1494, 1619
StyD4I	CCNGG	4 cut(s)	492, 757, 1516, 1570
StyI	CCWWGG	3 cut(s)	108, 274, 1188
TaaI	ACNGT	7 cut(s)	290, 376, 795, 929, 1772, 1835, 1885
TaiI	ACGT	4 cut(s)	62, 153, 342, 753
TaqI	TCGA	4 cut(s)	96, 144, 183, 1869
TaqII	GACCGA	1 cut(s)	1230
TasI	AATT	5 cut(s)	717, 1127, 1228, 1523, 1751
TauI	GCSGC	8 cut(s)	140, 165, 236, 314, 469, 530, 533, 874
TfiI	GAWTC	2 cut(s)	724, 1454
Tru1I	TTAA	5 cut(s)	1130, 1394, 1529, 1599, 1830
Tru9I	TTAA	5 cut(s)	1130, 1394, 1529, 1599, 1830
TscAI	CASTG	3 cut(s)	577, 934, 1888
TseFI	GTSAC	3 cut(s)	79, 677, 1766
TseI	GCWGC	4 cut(s)	6, 635, 671, 1712
Tsp45I	GTSAC	3 cut(s)	79, 677, 1766
TspDTI	ATGAA	6 cut(s)	683, 726, 1080, 1086, 1335, 1568
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	3 cut(s)	577, 934, 1888
Tth111I	GACNNNGTC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	1242
XapI	RAATTY	2 cut(s)	1228, 1751
XbaI	TCTAGA	1 cut(s)	1493
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	6 cut(s)	392, 549, 1200, 1331, 1494, 1619
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.