Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009071.1

Orthogroup ID

OG0014845

Physical Location & Seq

Genomic Coordinates Reverse (-)

344 .. 992

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 266 bp

cgggcgatgtatttataaaaagaattgtggccaaggctgcagattatgttcaggtacatgatgagaaattgttggtgaatggtgaaattcaaaatgaaaattacatattggagccttttacctatgaaatggaaccaattctcattccagaaggctatatctttgtgatgggggacaaccgcaacaacaattttgactgtcataactggccgttcactacagtgcacaaaacaagtctgtttcagaatttaaaagcacattactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016485 GO:0016787 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

87

Amino Acids

10.22

Weight (kDa)

5.16

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014845)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0136211 RchiOBHm_Chr5g0044941 RchiOBHm_Chr5g0063701 RchiOBHm_Chr7g0238341
rosa_laevigata	RLG00000013631
rosa_multiflora	Rmu_sc0009071.1_g000001
rosa_rugosa	Rorug01G0294300 Rorug07G0312300
rosa_samantha	Rh6BG089100 Rh6CG085300 Rh6CG093700 Rh7DG319400 Rh7DG478000
rosa_wichuraiana	Rw1G006480 Rw4G004840 Rw7G031920 Rw7G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	16
AciI	CCGC	1 cut(s)	180
AcoI	YGGCCR	2 cut(s)	29, 208
AcsI	RAATTY	2 cut(s)	86, 246
AfaI	GTAC	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	91
AleI	CACNNNNGTG	1 cut(s)	220
Alw21I	GWGCWC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	223
AoxI	GGCC	2 cut(s)	29, 208
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	2 cut(s)	86, 246
Asp700I	GAANNNNTTC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	87, 94
BaeGI	GKGCMC	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	195
BfmI	CTRYAG	2 cut(s)	38, 218
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	113, 134
BsaJI	CCNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	2 cut(s)	31, 210
BsiHKAI	GWGCWC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	31, 210
Bsp1286I	GDGCHC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	31, 210
BspLI	GGNNCC	2 cut(s)	113, 134
BspMAI	CTGCAG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	199, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstSFI	CTRYAG	2 cut(s)	38, 218
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	31, 210
BtgZI	GCGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	5 cut(s)	31, 37, 114, 155, 210
CviKI_1	RGCY	5 cut(s)	31, 37, 114, 155, 210
CviQI	GTAC	1 cut(s)	55
DraI	TTTAAA	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	29, 208
Eco130I	CCWWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	1 cut(s)	61
FaiI	YATR	7 cut(s)	16, 47, 59, 106, 125, 158, 203
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	31, 210
Hin1II	CATG	1 cut(s)	61
HphI	GGTGA	2 cut(s)	87, 94
Hpy166II	GTNNAC	2 cut(s)	215, 225
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	215, 225
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	199, 222
HpyCH4V	TGCA	2 cut(s)	40, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	3 cut(s)	37, 161, 192
Lsp1109I	GCAGC	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	7 cut(s)	23, 67, 86, 99, 137, 189, 246
MluNI	TGGCCA	1 cut(s)	31
Mox20I	TGGCCA	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	31
MseI	TTAA	1 cut(s)	250
MslI	CAYNNNNRTG	1 cut(s)	220
Msp20I	TGGCCA	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	113, 134
OliI	CACNNNNGTG	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	113, 134
PstI	CTGCAG	1 cut(s)	42
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	250
SatI	GCNGC	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	2 cut(s)	56, 124
SfcI	CTRYAG	2 cut(s)	38, 218
SgeI	CNNG	7 cut(s)	14, 45, 64, 70, 160, 219, 245
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	7 cut(s)	23, 67, 86, 99, 137, 189, 246
SsiI	CCGC	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	199, 222
TasI	AATT	7 cut(s)	23, 67, 86, 99, 137, 189, 246
Tru1I	TTAA	1 cut(s)	250
Tru9I	TTAA	1 cut(s)	250
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	110, 140
TspRI	CASTG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	223
XapI	RAATTY	2 cut(s)	86, 246
XmnI	GAANNNNTTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.