RchiOBHm_Chr2g0149081

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006593
Physical Location & Seq
Forward (+)
66918678 .. 66919849
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGGGGATTGTCATCAGTAAAGCTACGGATGGGCTCGGCGACCTGCTTGAAAAAACATTTTTGTCTCCATTTAAGACTATGTTTGATGGATCATGCCAGGAGTGTTCAGGACCTTGGGATTTGGTTTGTTTCATTGAGCATCTATGCGTCTCCAATCTGTTGAAACTGCTGATGATCCTGGTCCTTTGTTACATAACATTACTATTCTTCTATTTAGTGTTCAAGTTGGGGATCTTCCAATGCATTGGAAAAAGCCTCTGTAAAATGTGCTGGGCTGCATGTGAGACATATTGGTTTGCGCTACATGATATTTGTAGTTTCGTGTGGTACAAGTTGAGGAACACTAAGAGGGTAAACCGTCGTCGCCGACGCCATCTCCGCCACCACCAATTTCGAGACATTGAACAAGGCTACAGTTCAAGTGGGGATAATGAGTTGTGGGACAATTATCGTAATCTTAATGTTAGTAGAAAGCGAAAGTCACTCAGCAGGAGAAGAAAAGATAGGGTGCAGAGCTCTGTTAACCGTTCGAGTAGGCATGGCACTCGCAGCCACCATCATCGTCATGTAAGGTTAAAGTCTAGGAGTATGTCTGTTCGCGTTACGGGCAGATCTCAAAGACTAAAAAGCTCGAGACGTGTGAAAATAAGCAAGGTAACAAATGTTCGAAGGAAAACCAGAACTTCTAAGAGGAGGAGGCTTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

27.97

Weight (kDa)

11.1

Isoelectric Point (pI)

72.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 51
AccII CGCG 1 cut(s) 600
AciI CCGC 1 cut(s) 379
AclWI GGATC 3 cut(s) 97, 169, 239
AcyI GRCGYC 1 cut(s) 370
AfaI GTAC 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 637
AgsI TTSAA 5 cut(s) 50, 163, 223, 404, 420
AjiI CACGTC 1 cut(s) 638
AjnI CCWGG 2 cut(s) 96, 177
AluBI AGCT 3 cut(s) 23, 516, 630
AluI AGCT 3 cut(s) 23, 516, 630
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 5 cut(s) 69, 154, 278, 390, 628
AlwI GGATC 3 cut(s) 97, 169, 239
Ama87I CYCGRG 1 cut(s) 631
ApeKI GCWGC 2 cut(s) 275, 549
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 110, 181
AsuII TTCGAA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 631
AvaII GGWCC 2 cut(s) 110, 181
BanII GRGCYC 2 cut(s) 36, 518
Bbv12I GWGCWC 1 cut(s) 518
BbvI GCAGC 2 cut(s) 262, 561
BccI CCATC 4 cut(s) 23, 80, 381, 564
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 2 cut(s) 98, 179
BcoDI GTCTC 5 cut(s) 69, 154, 278, 390, 628
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 1 cut(s) 412
BfuAI ACCTGC 1 cut(s) 51
BglII AGATCT 1 cut(s) 611
BisI GCNGC 2 cut(s) 276, 550
BlsI GCNGC 2 cut(s) 277, 551
Bme1390I CCNGG 2 cut(s) 98, 179
Bme18I GGWCC 2 cut(s) 110, 181
BmeT110I CYCGRG 1 cut(s) 631
BmgBI CACGTC 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 110, 181
BmrFI CCNGG 2 cut(s) 98, 179
BmsI GCATC 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 667
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 2 cut(s) 98, 179
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 34
BseJI GATNNNNATC 1 cut(s) 11
BseMII CTCAG 1 cut(s) 499
BseRI GAGGAG 1 cut(s) 706
BseXI GCAGC 2 cut(s) 262, 561
BseYI CCCAGC 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 518
BsiHKCI CYCGRG 1 cut(s) 631
BslFI GGGAC 1 cut(s) 455
BsmAI GTCTC 5 cut(s) 69, 154, 278, 390, 628
BsmBI CGTCTC 2 cut(s) 154, 628
BsmFI GGGAC 1 cut(s) 455
BsoBI CYCGRG 1 cut(s) 631
Bsp119I TTCGAA 1 cut(s) 667
Bsp1286I GDGCHC 2 cut(s) 36, 518
Bsp143I GATC 4 cut(s) 89, 174, 231, 611
BspACI CCGC 1 cut(s) 379
BspCNI CTCAG 1 cut(s) 498
BspFNI CGCG 1 cut(s) 600
BspMI ACCTGC 1 cut(s) 51
BspPI GGATC 3 cut(s) 97, 169, 239
BspT104I TTCGAA 1 cut(s) 667
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 4 cut(s) 89, 174, 231, 611
BssNI GRCGYC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 98, 179
Bst4CI ACNGT 3 cut(s) 359, 416, 527
BstACI GRCGYC 1 cut(s) 370
BstBI TTCGAA 1 cut(s) 667
BstDEI CTNAG 4 cut(s) 345, 485, 687, 701
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 600
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 4 cut(s) 92, 177, 234, 614
BstMAI GTCTC 5 cut(s) 69, 154, 278, 390, 628
BstMBI GATC 4 cut(s) 89, 174, 231, 611
BstMWI GCNNNNNNNGC 3 cut(s) 378, 549, 606
BstNI CCWGG 2 cut(s) 98, 179
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 96, 177
BstSFI CTRYAG 1 cut(s) 412
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 2 cut(s) 262, 561
BstX2I RGATCY 2 cut(s) 231, 611
BstXI CCANNNNNNTGG 1 cut(s) 245
BstYI RGATCY 2 cut(s) 231, 611
BtrI CACGTC 1 cut(s) 638
BtsCI GGATG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 110, 181
CseI GACGC 2 cut(s) 136, 378
Csp6I GTAC 1 cut(s) 328
CviAII CATG 5 cut(s) 93, 279, 305, 539, 566
CviJI RGCY 9 cut(s) 23, 34, 255, 275, 411, 516, 552, 630, 700
CviKI_1 RGCY 9 cut(s) 23, 34, 255, 275, 411, 516, 552, 630, 700
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 4 cut(s) 345, 485, 687, 701
DpnI GATC 4 cut(s) 91, 176, 233, 613
DpnII GATC 4 cut(s) 89, 174, 231, 611
EciI GGCGGA 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 2 cut(s) 36, 518
Eco47I GGWCC 2 cut(s) 110, 181
Eco53kI GAGCTC 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 516
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 96, 177
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 245
EcoT38I GRGCYC 2 cut(s) 36, 518
ErhI CCWWGG 1 cut(s) 113
Esp3I CGTCTC 2 cut(s) 154, 628
FaeI CATG 5 cut(s) 96, 282, 308, 542, 569
FaqI GGGAC 1 cut(s) 455
FatI CATG 5 cut(s) 92, 278, 304, 538, 565
Fnu4HI GCNGC 2 cut(s) 276, 550
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 2 cut(s) 36, 518
Fsp4HI GCNGC 2 cut(s) 276, 550
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 300
GluI GCNGC 2 cut(s) 276, 550
GsaI CCCAGC 1 cut(s) 274
HgaI GACGC 2 cut(s) 136, 378
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 370
Hin1II CATG 5 cut(s) 96, 282, 308, 542, 569
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HpaI GTTAAC 1 cut(s) 523
Hpy166II GTNNAC 2 cut(s) 355, 523
Hpy188III TCNNGA 3 cut(s) 108, 395, 633
Hpy8I GTNNAC 2 cut(s) 355, 523
Hpy99I CGWCG 3 cut(s) 363, 366, 372
HpyAV CCTTC 1 cut(s) 663
HpyCH4III ACNGT 3 cut(s) 359, 416, 527
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 3 cut(s) 243, 278, 511
HpyF10VI GCNNNNNNNGC 3 cut(s) 378, 549, 606
HpyF3I CTNAG 4 cut(s) 345, 485, 687, 701
HpySE526I ACGT 1 cut(s) 637
Hsp92I GRCGYC 1 cut(s) 370
Hsp92II CATG 5 cut(s) 96, 282, 308, 542, 569
HspAI GCGC 1 cut(s) 299
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 4 cut(s) 89, 174, 231, 611
LpnPI CCDG 9 cut(s) 56, 83, 93, 110, 164, 191, 256, 475, 691
Lsp1109I GCAGC 2 cut(s) 262, 561
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 4 cut(s) 188, 480, 601, 655
MalI GATC 4 cut(s) 91, 176, 233, 613
MboI GATC 4 cut(s) 89, 174, 231, 611
MboII GAAGA 3 cut(s) 199, 226, 507
MflI RGATCY 2 cut(s) 231, 611
MhlI GDGCHC 2 cut(s) 36, 518
MluCI AATT 2 cut(s) 389, 445
MnlI CCTC 6 cut(s) 266, 330, 342, 684, 687, 690
Mph1103I ATGCAT 1 cut(s) 245
MseI TTAA 4 cut(s) 72, 459, 522, 575
MslI CAYNNNNRTG 1 cut(s) 564
MspR9I CCNGG 2 cut(s) 98, 179
MvaI CCWGG 2 cut(s) 98, 179
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 378, 549, 606
NdeII GATC 4 cut(s) 89, 174, 231, 611
NlaIII CATG 5 cut(s) 96, 282, 308, 542, 569
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 1 cut(s) 282
NspV TTCGAA 1 cut(s) 667
PaeR7I CTCGAG 1 cut(s) 631
PkrI GCNGC 2 cut(s) 277, 551
PpuMI RGGWCCY 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 96, 177
PspFI CCCAGC 1 cut(s) 270
PspGI CCWGG 2 cut(s) 96, 177
PspPI GGNCC 2 cut(s) 110, 181
PspPPI RGGWCCY 1 cut(s) 110
PsrI GAACNNNNNNTAC 2 cut(s) 648, 680
PsuI RGATCY 2 cut(s) 231, 611
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 518
SaqAI TTAA 4 cut(s) 72, 459, 522, 575
SatI GCNGC 2 cut(s) 276, 550
Sau3AI GATC 4 cut(s) 89, 174, 231, 611
Sau96I GGNCC 2 cut(s) 110, 181
ScrFI CCNGG 2 cut(s) 98, 179
SduI GDGCHC 2 cut(s) 36, 518
SetI ASST 9 cut(s) 25, 45, 115, 518, 575, 632, 640, 657, 707
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 412
Sfr274I CTCGAG 1 cut(s) 631
SfuI TTCGAA 1 cut(s) 667
SinI GGWCC 2 cut(s) 110, 181
SlaI CTCGAG 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
Sse9I AATT 2 cut(s) 389, 445
SsiI CCGC 1 cut(s) 379
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 1 cut(s) 518
StyD4I CCNGG 2 cut(s) 96, 177
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 3 cut(s) 359, 416, 527
TaiI ACGT 1 cut(s) 640
TaqI TCGA 4 cut(s) 394, 530, 632, 667
TasI AATT 2 cut(s) 389, 445
Tru1I TTAA 4 cut(s) 72, 459, 522, 575
Tru9I TTAA 4 cut(s) 72, 459, 522, 575
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 2 cut(s) 275, 549
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 110, 181
XceI RCATGY 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 631
XspI CTAG 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.