RchiOBHm_Chr2g0149221

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008700
Physical Location & Seq
Reverse (-)
67087281 .. 67093200
5920 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1194 bp
ATGTTCATCGCCGCAGCAACGACGACGTGTCGTTTCCATACGCCTCGAATTCAATGCGCTGATTCGAAGCCCGGACCTGGGTTCGGAACCAAATCCAACAACAAGAACAAGAACAAGAAAAAGAACAACCTCAACCAGACAAACAAGGCCGCTACCTCAGTTGAGCAGAAGGGAACTGGTTTTCAACAAAGGAAATCAACCACGAACCGGTCTGTTACAAATCAGGCGCCTGGATTAAGTTCTCGATTTGATGGGAAAGTTAAGAGAAATATTGGGGACCTTGAGTTTGAGGAACGTCTGGAAGCAGTTAGAAGTTCAGCACTTGAGCAGAAGAAAACAATTGACAAAGAGGAATTTGGAGCAATTGACTATGATGCACCTGTCAAATCGGAAAAGAAAAAAATTGGACTTGGAACACAGATTGGAGTCGGTGTAGCAGTATTGGTATTTGGTTTGGTTTTTGCTTTGGGGGACTTTCTTCCTTCTAGCAGTGTTAGTCCTACTGAGGATGCTGCAGTAACCAGTAATAAACTGTCCGAAGAAGAGAAAGCTTCACTTCAGACTAGGCTCAAAGAATATGAAGCAACACTTAGTAACAGCCCAAAAGATCCAACTGCTCTTGAGGGAGCTGCAGTAACTTTAGCAGAATTAGGAGAATATACTCGGGCTTCCACTCTGCTTGAGGACTTGACTAAGGAAAAACCAAGTGATCCTGAAGTTTTTCGTCTGCTTGGAGAAGTAAAATATGAACTCAAAGATTATGAAGGGAGTGTTGCTGCATATAAGGTTTCTTCCACGGTGTCCAAAGATATCAAATTTGAAGTTATGCGTGGCCTTACAAATGCATTGCTTGCTGCTAAAAGACCAGATGAGGCTGTCCAATTTCTTCTTGCCTCTAGATCACGGTTGGATGCAGACAACCCAAAGAGCAGTACGACTGAACTGCAGGTGGATCCCATTCAAGTCGAATTACTTCTTGGAAAAGCCTATTCAGATTGGGGCCATATCAGTGATGCTGTTTCTGTCTATGATCGGCTCATCTCTAGTCATCCAAATGACTTCCGTGGTTACTTGGCTAAGGGAATTATATTAAGAGAAAATGGTAAAGGTGGAGAAGCAGAGCGGATGTTCATACAGGCACGGTTTTTTGCACCAGAGAAGGCCAAGGCACTTGTAGATCGGTATTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_8

Protein Analysis

397

Amino Acids

43.52

Weight (kDa)

8.86

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 193 - 245 5.4e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 937
Acc36I ACCTGC 1 cut(s) 937
AccB1I GGYRCC 1 cut(s) 226
AccBSI CCGCTC 1 cut(s) 1123
AciI CCGC 3 cut(s) 12, 150, 1123
AclWI GGATC 4 cut(s) 602, 704, 947, 960
AcsI RAATTY 3 cut(s) 48, 353, 815
AcuI CTGAAG 2 cut(s) 542, 735
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 1 cut(s) 934
AfiI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 207
AflIII ACRYGT 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 5 cut(s) 53, 185, 821, 962, 1188
AhdI GACNNNNNGTC 1 cut(s) 27
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 2 cut(s) 76, 229
AjuI GAANNNNNNNTTGG 2 cut(s) 960, 992
AluBI AGCT 2 cut(s) 551, 629
AluI AGCT 2 cut(s) 551, 629
AlwI GGATC 4 cut(s) 602, 704, 947, 960
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 4 cut(s) 147, 832, 1000, 1161
ApeKI GCWGC 5 cut(s) 14, 512, 629, 776, 854
ApoI RAATTY 3 cut(s) 48, 353, 815
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AsiGI ACCGGT 1 cut(s) 207
Asp700I GAANNNNTTC 2 cut(s) 720, 972
AspLEI GCGC 2 cut(s) 59, 229
AspS9I GGNCC 3 cut(s) 74, 277, 1000
AsuC2I CCSGG 1 cut(s) 72
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 2 cut(s) 74, 277
BamHI GGATCC 1 cut(s) 952
BanI GGYRCC 1 cut(s) 226
BbvI GCAGC 5 cut(s) 26, 499, 616, 763, 841
BccI CCATC 1 cut(s) 245
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 925, 959
BciT130I CCWGG 2 cut(s) 78, 231
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 4 cut(s) 486, 564, 897, 1044
BfmI CTRYAG 3 cut(s) 513, 630, 944
BfoI RGCGCY 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 937
BisI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
BlsI GCNGC 7 cut(s) 13, 16, 151, 514, 631, 778, 856
Bme1390I CCNGG 3 cut(s) 72, 78, 231
Bme18I GGWCC 2 cut(s) 74, 277
BmeRI GACNNNNNGTC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 663
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 3 cut(s) 74, 277, 1000
BmiI GGNNCC 5 cut(s) 88, 228, 278, 954, 1001
BmrFI CCNGG 3 cut(s) 72, 78, 231
BmsI GCATC 4 cut(s) 364, 499, 901, 1003
Bpu10I CCTNAGC 1 cut(s) 1077
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 4 cut(s) 302, 344, 641, 701
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 4 cut(s) 77, 795, 1063, 1164
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 618, 648
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 78, 83, 207
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 2 cut(s) 181, 522
Bse3DI GCAATG 1 cut(s) 845
BseBI CCWGG 2 cut(s) 78, 231
BseDI CCNNGG 4 cut(s) 77, 795, 1063, 1164
BseGI GGATG 4 cut(s) 514, 916, 1048, 1131
BseLI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 207
BseMI GCAATG 1 cut(s) 845
BseMII CTCAG 2 cut(s) 171, 495
BseNI ACTGG 2 cut(s) 181, 522
BseXI GCAGC 5 cut(s) 26, 499, 616, 763, 841
BshFI GGCC 4 cut(s) 149, 834, 1002, 1163
BshNI GGYRCC 1 cut(s) 226
BshTI ACCGGT 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 2 cut(s) 72, 208
BslFI GGGAC 2 cut(s) 290, 485
BslI CCNNNNNNNGG 4 cut(s) 77, 78, 83, 207
BsmFI GGGAC 2 cut(s) 290, 485
BsnI GGCC 4 cut(s) 149, 834, 1002, 1163
BsoBI CYCGRG 1 cut(s) 663
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 6 cut(s) 607, 709, 899, 952, 1030, 1177
BspACI CCGC 3 cut(s) 12, 150, 1123
BspANI GGCC 4 cut(s) 149, 834, 1002, 1163
BspCNI CTCAG 2 cut(s) 170, 496
BspLI GGNNCC 5 cut(s) 88, 228, 278, 954, 1001
BspMAI CTGCAG 3 cut(s) 517, 634, 948
BspMI ACCTGC 1 cut(s) 937
BspPI GGATC 4 cut(s) 602, 704, 947, 960
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 1123
BsrDI GCAATG 1 cut(s) 845
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 2 cut(s) 181, 522
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 4 cut(s) 77, 795, 1063, 1164
BssMI GATC 6 cut(s) 607, 709, 899, 952, 1030, 1177
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 1164
Bst2UI CCWGG 2 cut(s) 78, 231
Bst4CI ACNGT 4 cut(s) 534, 799, 906, 1143
Bst6I CTCTTC 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 851
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 5 cut(s) 157, 504, 590, 693, 1077
BstDSI CCRYGG 2 cut(s) 795, 1063
BstF5I GGATG 4 cut(s) 514, 916, 1048, 1131
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 2 cut(s) 59, 229
BstKTI GATC 6 cut(s) 610, 712, 902, 955, 1033, 1180
BstMBI GATC 6 cut(s) 607, 709, 899, 952, 1030, 1177
BstMWI GCNNNNNNNGC 1 cut(s) 851
BstNI CCWGG 2 cut(s) 78, 231
BstSCI CCNGG 3 cut(s) 70, 76, 229
BstSFI CTRYAG 3 cut(s) 513, 630, 944
BstV1I GCAGC 5 cut(s) 26, 499, 616, 763, 841
BstX2I RGATCY 2 cut(s) 607, 952
BstYI RGATCY 2 cut(s) 607, 952
BsuRI GGCC 4 cut(s) 149, 834, 1002, 1163
BtgI CCRYGG 2 cut(s) 795, 1063
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 4 cut(s) 514, 916, 1048, 1131
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 2 cut(s) 496, 1015
BveI ACCTGC 1 cut(s) 937
Cac8I GCNNGC 1 cut(s) 852
CfoI GCGC 2 cut(s) 59, 229
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 3 cut(s) 74, 277, 1000
Csp6I GTAC 1 cut(s) 933
CspAI ACCGGT 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 661, 696
CviQI GTAC 1 cut(s) 933
DdeI CTNAG 5 cut(s) 157, 504, 590, 693, 1077
DinI GGCGCC 1 cut(s) 228
DpnI GATC 6 cut(s) 609, 711, 901, 954, 1032, 1179
DpnII GATC 6 cut(s) 607, 709, 899, 952, 1030, 1177
DriI GACNNNNNGTC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 537
Eam1105I GACNNNNNGTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 1164
Eco32I GATATC 1 cut(s) 811
Eco47I GGWCC 2 cut(s) 74, 277
Eco57I CTGAAG 2 cut(s) 542, 735
Eco88I CYCGRG 1 cut(s) 663
EcoO109I RGGNCCY 1 cut(s) 277
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 76, 229
EcoRV GATATC 1 cut(s) 811
EcoT14I CCWWGG 1 cut(s) 1164
EcoT22I ATGCAT 1 cut(s) 847
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 1164
FalI AAGNNNNNCTT 4 cut(s) 540, 572, 573, 605
FaqI GGGAC 2 cut(s) 290, 485
Fnu4HI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
FokI GGATG 4 cut(s) 521, 923, 1035, 1138
Fsp4HI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
FspBI CTAG 4 cut(s) 486, 564, 897, 1044
GlaI GCGC 2 cut(s) 58, 228
GluI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 4 cut(s) 149, 834, 1002, 1163
HapII CCGG 2 cut(s) 72, 208
HhaI GCGC 2 cut(s) 59, 229
Hin1I GRCGYC 1 cut(s) 227
Hin6I GCGC 2 cut(s) 57, 227
HinP1I GCGC 2 cut(s) 57, 227
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 2 cut(s) 62, 426
HpaII CCGG 2 cut(s) 72, 208
Hpy188I TCNGA 5 cut(s) 86, 391, 538, 561, 994
Hpy188III TCNNGA 6 cut(s) 243, 299, 620, 713, 897, 1188
Hpy99I CGWCG 2 cut(s) 25, 28
HpyAV CCTTC 4 cut(s) 163, 492, 758, 1153
HpyCH4III ACNGT 4 cut(s) 534, 799, 906, 1143
HpyCH4IV ACGT 2 cut(s) 26, 295
HpyCH4V TGCA 8 cut(s) 377, 515, 632, 779, 845, 914, 946, 1151
HpyF10VI GCNNNNNNNGC 1 cut(s) 851
HpyF3I CTNAG 5 cut(s) 157, 504, 590, 693, 1077
HpySE526I ACGT 2 cut(s) 26, 295
Hsp92I GRCGYC 1 cut(s) 227
HspAI GCGC 2 cut(s) 57, 227
KasI GGCGCC 1 cut(s) 226
Kzo9I GATC 6 cut(s) 607, 709, 899, 952, 1030, 1177
LmnI GCTCC 2 cut(s) 359, 626
Lsp1109I GCAGC 5 cut(s) 26, 499, 616, 763, 841
LweI GCATC 4 cut(s) 364, 499, 901, 1003
MaeI CTAG 4 cut(s) 486, 564, 897, 1044
MaeII ACGT 2 cut(s) 26, 295
MaeIII GTNAC 5 cut(s) 214, 517, 593, 634, 1067
MalI GATC 6 cut(s) 609, 711, 901, 954, 1032, 1179
MbiI CCGCTC 1 cut(s) 1123
MboI GATC 6 cut(s) 607, 709, 899, 952, 1030, 1177
MboII GAAGA 6 cut(s) 343, 470, 551, 554, 783, 878
MfeI CAATTG 2 cut(s) 339, 363
MflI RGATCY 2 cut(s) 607, 952
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 3 cut(s) 120, 635, 888
Mph1103I ATGCAT 1 cut(s) 847
MroXI GAANNNNTTC 2 cut(s) 720, 972
MseI TTAA 3 cut(s) 236, 261, 1091
MslI CAYNNNNRTG 2 cut(s) 1008, 1053
MspI CCGG 2 cut(s) 72, 208
MspR9I CCNGG 3 cut(s) 72, 78, 231
MunI CAATTG 2 cut(s) 339, 363
MvaI CCWGG 2 cut(s) 78, 231
MwoI GCNNNNNNNGC 1 cut(s) 851
NarI GGCGCC 1 cut(s) 227
NciI CCSGG 1 cut(s) 72
NdeII GATC 6 cut(s) 607, 709, 899, 952, 1030, 1177
NlaIV GGNNCC 5 cut(s) 88, 228, 278, 954, 1001
NsiI ATGCAT 1 cut(s) 847
NspV TTCGAA 1 cut(s) 65
PaqCI CACCTGC 1 cut(s) 937
PdmI GAANNNNTTC 2 cut(s) 720, 972
PfeI GAWTC 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 7 cut(s) 13, 16, 151, 514, 631, 778, 856
PleI GAGTC 1 cut(s) 434
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 434
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 76, 229
PspGI CCWGG 2 cut(s) 76, 229
PspN4I GGNNCC 5 cut(s) 88, 228, 278, 954, 1001
PspPI GGNCC 3 cut(s) 74, 277, 1000
PspPPI RGGWCCY 1 cut(s) 277
PstI CTGCAG 3 cut(s) 517, 634, 948
PsuI RGATCY 2 cut(s) 607, 952
RsaI GTAC 1 cut(s) 934
RsaNI GTAC 1 cut(s) 933
RseI CAYNNNNRTG 2 cut(s) 1008, 1053
SaqAI TTAA 3 cut(s) 236, 261, 1091
SatI GCNGC 7 cut(s) 12, 15, 150, 513, 630, 777, 855
Sau3AI GATC 6 cut(s) 607, 709, 899, 952, 1030, 1177
Sau96I GGNCC 3 cut(s) 74, 277, 1000
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 3 cut(s) 72, 78, 231
SfaNI GCATC 4 cut(s) 364, 499, 901, 1003
SfcI CTRYAG 3 cut(s) 513, 630, 944
SfoI GGCGCC 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 2 cut(s) 74, 277
SmiMI CAYNNNNRTG 2 cut(s) 1008, 1053
SmlI CTYRAG 4 cut(s) 281, 323, 620, 680
SmoI CTYRAG 4 cut(s) 281, 323, 620, 680
SsiI CCGC 3 cut(s) 12, 150, 1123
SspDI GGCGCC 1 cut(s) 226
SspI AATATT 1 cut(s) 271
SspMI CTAG 4 cut(s) 486, 564, 897, 1044
StyD4I CCNGG 3 cut(s) 70, 76, 229
StyI CCWWGG 1 cut(s) 1164
TaaI ACNGT 4 cut(s) 534, 799, 906, 1143
TaiI ACGT 2 cut(s) 29, 298
TaqI TCGA 4 cut(s) 46, 65, 244, 966
TauI GCSGC 2 cut(s) 14, 152
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 3 cut(s) 236, 261, 1091
Tru9I TTAA 3 cut(s) 236, 261, 1091
TscAI CASTG 2 cut(s) 496, 1015
TseI GCWGC 5 cut(s) 14, 512, 629, 776, 854
TspDTI ATGAA 4 cut(s) 594, 762, 777, 1120
TspGWI ACGGA 1 cut(s) 1052
TspRI CASTG 2 cut(s) 496, 1015
VpaK11BI GGWCC 2 cut(s) 74, 277
XapI RAATTY 3 cut(s) 48, 353, 815
XbaI TCTAGA 1 cut(s) 896
XmnI GAANNNNTTC 2 cut(s) 720, 972
XspI CTAG 4 cut(s) 486, 564, 897, 1044
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.