Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015738

Physical Location & Seq

Genomic Coordinates Forward (+)

68051135 .. 68053003

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATCATGGACTCCACTCCCAACCTACACCCGCTCTTTCTCCCCGTCGTAGAGGCTAAAGAAGAAGAAGAAGTTGATCCGTTAGATCAAAGGTGGTCCCCTTGTCTTTCTTGGTCAATGGGGTCTATAGACGAGAAGATAGACCTTGAAGCTCATGAGGAGCTCACATTTAGCTCATCAGCAGCCACGGGTGACATAGAGGCCCTGCATTTTGAGACGGTTCATTTGCACTCCCGAGCTGATGGGGCATACTCATGGATTTCGAAGAATGTTGGGAGGATAAGAACTCCGAGGAGCCTTTATCTTGTCCTTTTGAATGCAAACATGTTGCTACCCTGTGGTCCCTTGGCAATTTGGCTACATATCGTTACTGAAAAGCAGCTTATTGGGCATGGCACCATTAACAGGGCGTTTAGGATATGTGACTGGCAACTCACCTTGCACTCAGAACCGAAAGTTGGGGGACTTATAAATGTCACATTTGTAACTGTACCTGAGATCTTTTCATCACTCTTTGCATTAAGGAAAGACATGATTAGAGTTGTTCAGAGATCTTTATTGGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

189

Amino Acids

21.32

Weight (kDa)

5.57

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150381
rosa_laevigata	RLG00000010921 RLG00000020494
rosa_multiflora	Rmu_sc0000061.1_g000028 Rmu_sc0002179.1_g000010 Rmu_ssc0000480.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163170
rosa_rugosa	Rorug02G0421100 Rorug06G0337100
rosa_samantha	Rh2AG480200 Rh2BG492300 Rh2CG466500 Rh2DG501200 Rh6AG448900
rosa_wichuraiana	Rw2G039190 Rw6G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	395
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	2 cut(s)	405, 458
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	149, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	5 cut(s)	152, 163, 174, 239, 382
AluI	AGCT	5 cut(s)	152, 163, 174, 239, 382
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	182, 379
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AspS9I	GGNCC	3 cut(s)	96, 202, 341
AsuHPI	GGTGA	2 cut(s)	203, 427
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	2 cut(s)	96, 341
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	194, 391
BccI	CCATC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	2 cut(s)	498, 551
BisI	GCNGC	2 cut(s)	183, 380
BlsI	GCNGC	2 cut(s)	184, 381
Bme18I	GGWCC	2 cut(s)	96, 341
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	3 cut(s)	96, 202, 341
BmiI	GGNNCC	4 cut(s)	98, 296, 343, 397
Bpu14I	TTCGAA	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	186, 290, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 458
Bse1I	ACTGG	1 cut(s)	431
BseDI	CCNNGG	3 cut(s)	186, 290, 345
BseLI	CCNNNNNNNGG	2 cut(s)	405, 458
BseMII	CTCAG	2 cut(s)	459, 486
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	2 cut(s)	173, 307
BseXI	GCAGC	2 cut(s)	194, 391
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	234
BslFI	GGGAC	3 cut(s)	82, 327, 477
BslI	CCNNNNNNNGG	2 cut(s)	405, 458
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	3 cut(s)	82, 327, 477
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	3, 76, 85, 498, 551
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	458, 487
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	4 cut(s)	98, 296, 343, 397
BspPI	GGATC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	3 cut(s)	186, 290, 345
BssMI	GATC	5 cut(s)	3, 76, 85, 498, 551
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	220, 490
BstBI	TTCGAA	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	445, 495
BstDSI	CCRYGG	1 cut(s)	186
BstKTI	GATC	5 cut(s)	6, 79, 88, 501, 554
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	5 cut(s)	3, 76, 85, 498, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 388
BstNSI	RCATGY	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	194, 391
BstX2I	RGATCY	2 cut(s)	498, 551
BstYI	RGATCY	2 cut(s)	498, 551
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	96, 202, 341
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	6 cut(s)	7, 155, 255, 325, 392, 532
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	2 cut(s)	445, 495
DpnI	GATC	5 cut(s)	5, 78, 87, 500, 553
DpnII	GATC	5 cut(s)	3, 76, 85, 498, 551
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	96, 341
Eco53kI	GAGCTC	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	6 cut(s)	10, 158, 258, 328, 395, 535
FaqI	GGGAC	3 cut(s)	82, 327, 477
FatI	CATG	6 cut(s)	6, 154, 254, 324, 391, 531
FauI	CCCGC	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	183, 380
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	183, 380
GluI	GCNGC	2 cut(s)	183, 380
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	6 cut(s)	10, 158, 258, 328, 395, 535
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	2 cut(s)	203, 427
Hpy188I	TCNGA	3 cut(s)	291, 448, 549
Hpy188III	TCNNGA	2 cut(s)	155, 234
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	220, 490
HpyCH4V	TGCA	5 cut(s)	208, 229, 320, 442, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 388
HpyF3I	CTNAG	2 cut(s)	445, 495
Hsp92II	CATG	6 cut(s)	10, 158, 258, 328, 395, 535
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 76, 85, 498, 551
LmnI	GCTCC	2 cut(s)	160, 294
LpnPI	CCDG	5 cut(s)	218, 349, 391, 412, 507
Lsp1109I	GCAGC	2 cut(s)	194, 391
MaeIII	GTNAC	5 cut(s)	191, 367, 422, 475, 484
MalI	GATC	5 cut(s)	5, 78, 87, 500, 553
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	5 cut(s)	3, 76, 85, 498, 551
MboII	GAAGA	5 cut(s)	74, 77, 80, 148, 277
MflI	RGATCY	2 cut(s)	498, 551
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	5 cut(s)	46, 151, 193, 270, 285
MseI	TTAA	2 cut(s)	402, 521
MslI	CAYNNNNRTG	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	322
MwoI	GCNNNNNNNGC	2 cut(s)	245, 388
NdeII	GATC	5 cut(s)	3, 76, 85, 498, 551
NlaIII	CATG	6 cut(s)	10, 158, 258, 328, 395, 535
NlaIV	GGNNCC	4 cut(s)	98, 296, 343, 397
NmuCI	GTSAC	3 cut(s)	191, 422, 475
NspI	RCATGY	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	263
PagI	TCATGA	1 cut(s)	154
PciI	ACATGT	1 cut(s)	324
PctI	GAATGC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	184, 381
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PscI	ACATGT	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	165
PspN4I	GGNNCC	4 cut(s)	98, 296, 343, 397
PspPI	GGNCC	3 cut(s)	96, 202, 341
PsuI	RGATCY	2 cut(s)	498, 551
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	402, 521
SatI	GCNGC	2 cut(s)	183, 380
Sau3AI	GATC	5 cut(s)	3, 76, 85, 498, 551
Sau96I	GGNCC	3 cut(s)	96, 202, 341
SchI	GAGTC	1 cut(s)	5
SduI	GDGCHC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	2 cut(s)	96, 341
SmiMI	CAYNNNNRTG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	220, 490
TaqI	TCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	351
Tru1I	TTAA	2 cut(s)	402, 521
Tru9I	TTAA	2 cut(s)	402, 521
TseFI	GTSAC	3 cut(s)	191, 422, 475
TseI	GCWGC	2 cut(s)	182, 379
Tsp45I	GTSAC	3 cut(s)	191, 422, 475
TspDTI	ATGAA	2 cut(s)	212, 495
TspGWI	ACGGA	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	96, 341
XceI	RCATGY	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.