Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015738

Physical Location & Seq

Genomic Coordinates Forward (+)

72076349 .. 72077306

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG501200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATCATGGACTCCACTCCCAACCTACACCCGCTCTTTCTCCCCGTCGTAGAGGCTAAAGAAGAAGAAGAAGTTGATCCGTTAGATCAAAGGTGGTCCCCTTGTCTTTCTTGGTCAATGGGGTCTATAGACGAGAAGATAGACCTTGAAGCTCATGAGGAGCTCACATTTAGCTCATCAGCAGCCACGGGTGACATAGAGGCCCTGCATTTTGAGACGGTTCATTTGCACTCCCGAGCTGATGGGGCATACTCATGGATTTCGAAGAATGTTGGGAGGATAAGAACTCCGAGGAGCCTTTATCTTGTCCTTTTGAATGCAAACATGTTGCTACCCTGTGGTCCCTTGGCAATTTGGCTACATATCGTTACTGAAAAGCAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

128

Amino Acids

14.38

Weight (kDa)

4.85

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150381
rosa_laevigata	RLG00000010921 RLG00000020494
rosa_multiflora	Rmu_sc0000061.1_g000028 Rmu_sc0002179.1_g000010 Rmu_ssc0000480.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163170
rosa_rugosa	Rorug02G0421100 Rorug06G0337100
rosa_samantha	Rh2AG480200 Rh2BG492300 Rh2CG466500 Rh2DG501200 Rh6AG448900
rosa_wichuraiana	Rw2G039190 Rw6G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	149, 316
AluBI	AGCT	4 cut(s)	152, 163, 174, 239
AluI	AGCT	4 cut(s)	152, 163, 174, 239
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AspS9I	GGNCC	3 cut(s)	96, 202, 341
AsuHPI	GGTGA	1 cut(s)	203
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	2 cut(s)	96, 341
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	96, 341
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	3 cut(s)	96, 202, 341
BmiI	GGNNCC	3 cut(s)	98, 296, 343
Bpu14I	TTCGAA	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	186, 290, 345
BseDI	CCNNGG	3 cut(s)	186, 290, 345
BseRI	GAGGAG	2 cut(s)	173, 307
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	82, 327
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	2 cut(s)	82, 327
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	3, 76, 85
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	98, 296, 343
BspPI	GGATC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	186, 290, 345
BssMI	GATC	3 cut(s)	3, 76, 85
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	186
BstKTI	GATC	3 cut(s)	6, 79, 88
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	3 cut(s)	3, 76, 85
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	96, 202, 341
CviAII	CATG	4 cut(s)	7, 155, 255, 325
CviJI	RGCY	9 cut(s)	56, 152, 163, 174, 185, 203, 239, 297, 358
CviKI_1	RGCY	9 cut(s)	56, 152, 163, 174, 185, 203, 239, 297, 358
DpnI	GATC	3 cut(s)	5, 78, 87
DpnII	GATC	3 cut(s)	3, 76, 85
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	96, 341
Eco53kI	GAGCTC	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	4 cut(s)	10, 158, 258, 328
FaiI	YATR	8 cut(s)	8, 128, 156, 197, 250, 256, 326, 363
FaqI	GGGAC	2 cut(s)	82, 327
FatI	CATG	4 cut(s)	6, 154, 254, 324
FauI	CCCGC	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	10, 158, 258, 328
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	155, 234
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	208, 229, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
Hsp92II	CATG	4 cut(s)	10, 158, 258, 328
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 76, 85
LmnI	GCTCC	2 cut(s)	160, 294
LpnPI	CCDG	3 cut(s)	218, 349, 365
Lsp1109I	GCAGC	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	191, 367
MalI	GATC	3 cut(s)	5, 78, 87
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	3 cut(s)	3, 76, 85
MboII	GAAGA	5 cut(s)	74, 77, 80, 148, 277
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	5 cut(s)	46, 151, 193, 270, 285
MslI	CAYNNNNRTG	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	3 cut(s)	3, 76, 85
NlaIII	CATG	4 cut(s)	10, 158, 258, 328
NlaIV	GGNNCC	3 cut(s)	98, 296, 343
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	263
PagI	TCATGA	1 cut(s)	154
PciI	ACATGT	1 cut(s)	324
PctI	GAATGC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PscI	ACATGT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	98, 296, 343
PspPI	GGNCC	3 cut(s)	96, 202, 341
RseI	CAYNNNNRTG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	165
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	3 cut(s)	3, 76, 85
Sau96I	GGNCC	3 cut(s)	96, 202, 341
SchI	GAGTC	1 cut(s)	5
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	27, 95, 147, 154, 165, 176, 241
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	2 cut(s)	96, 341
SmiMI	CAYNNNNRTG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	96, 341
XceI	RCATGY	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.