Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000480.1

Orthogroup ID

OG0015738

Physical Location & Seq

Genomic Coordinates Forward (+)

30834 .. 31990

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000480.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggactccactcccaacctacacccgctctttctccccgtcgtagaggctaaagaagaagaagaagttgatccgttagatcaaaggtggtccccttgtctttcttggtcaatggggtctatagacgagaagatagaccttgaagctcatgaggagctcacatttagctcatcagcagccacgggtgacatagaggccctgcattttgagacggttcatttgcactcccgagctgatggggcatactcatggatttcgaagaatgttgggaggataagaactccgaggagcctttatcttgtccttttgaatgcaaagatcaccatgttgctaccctgtggtcccttggcaatttggctacatatcgttactgaaaagcaggcaactcgccttgcactcagaaccgaaaggtacgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

139

Amino Acids

15.75

Weight (kDa)

5.17

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150381
rosa_laevigata	RLG00000010921 RLG00000020494
rosa_multiflora	Rmu_sc0000061.1_g000028 Rmu_sc0002179.1_g000010 Rmu_ssc0000480.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163170
rosa_rugosa	Rorug02G0421100 Rorug06G0337100
rosa_samantha	Rh2AG480200 Rh2BG492300 Rh2CG466500 Rh2DG501200 Rh6AG448900
rosa_wichuraiana	Rw2G039190 Rw6G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	28
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	143, 310
AluBI	AGCT	4 cut(s)	146, 157, 168, 233
AluI	AGCT	4 cut(s)	146, 157, 168, 233
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AspS9I	GGNCC	3 cut(s)	90, 196, 341
AsuHPI	GGTGA	2 cut(s)	197, 313
AsuII	TTCGAA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	2 cut(s)	90, 341
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BcoDI	GTCTC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	2 cut(s)	90, 341
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	3 cut(s)	90, 196, 341
BmiI	GGNNCC	3 cut(s)	92, 290, 343
Bpu14I	TTCGAA	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	180, 284, 345
BseDI	CCNNGG	3 cut(s)	180, 284, 345
BseMII	CTCAG	1 cut(s)	412
BseRI	GAGGAG	2 cut(s)	167, 301
BseXI	GCAGC	1 cut(s)	188
BshFI	GGCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	76, 327
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	76, 327
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	228
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	70, 79, 318
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	411
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	92, 290, 343
BspPI	GGATC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	180, 284, 345
BssMI	GATC	3 cut(s)	70, 79, 318
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	214
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	398
BstDSI	CCRYGG	1 cut(s)	180
BstKTI	GATC	3 cut(s)	73, 82, 321
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	70, 79, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	90, 196, 341
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	3 cut(s)	149, 249, 325
CviJI	RGCY	9 cut(s)	50, 146, 157, 168, 179, 197, 233, 291, 358
CviKI_1	RGCY	9 cut(s)	50, 146, 157, 168, 179, 197, 233, 291, 358
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	3 cut(s)	72, 81, 320
DpnII	GATC	3 cut(s)	70, 79, 318
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	90, 341
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	3 cut(s)	152, 252, 328
FaiI	YATR	7 cut(s)	122, 150, 191, 244, 250, 326, 363
FaqI	GGGAC	2 cut(s)	76, 327
FatI	CATG	3 cut(s)	148, 248, 324
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	152, 252, 328
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	2 cut(s)	197, 313
Hpy188I	TCNGA	2 cut(s)	285, 401
Hpy188III	TCNNGA	2 cut(s)	149, 228
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	4 cut(s)	202, 223, 314, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	3 cut(s)	152, 252, 328
Kzo9I	GATC	3 cut(s)	70, 79, 318
LmnI	GCTCC	2 cut(s)	154, 288
LpnPI	CCDG	3 cut(s)	212, 349, 365
Lsp1109I	GCAGC	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	185, 367
MalI	GATC	3 cut(s)	72, 81, 320
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	3 cut(s)	70, 79, 318
MboII	GAAGA	5 cut(s)	68, 71, 74, 142, 271
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	351
MnlI	CCTC	5 cut(s)	40, 145, 187, 264, 279
MslI	CAYNNNNRTG	1 cut(s)	247
Mva1269I	GAATGC	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	3 cut(s)	70, 79, 318
NlaIII	CATG	3 cut(s)	152, 252, 328
NlaIV	GGNNCC	3 cut(s)	92, 290, 343
NmuCI	GTSAC	1 cut(s)	185
NspV	TTCGAA	1 cut(s)	257
PagI	TCATGA	1 cut(s)	148
PctI	GAATGC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	92, 290, 343
PspPI	GGNCC	3 cut(s)	90, 196, 341
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	70, 79, 318
Sau96I	GGNCC	3 cut(s)	90, 196, 341
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	8 cut(s)	21, 89, 141, 148, 159, 170, 235, 413
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	2 cut(s)	90, 341
SmiMI	CAYNNNNRTG	1 cut(s)	247
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	63
VpaK11BI	GGWCC	2 cut(s)	90, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.