Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002179.1

Orthogroup ID

OG0015738

Physical Location & Seq

Genomic Coordinates Forward (+)

52130 .. 53303

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002179.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggactccactcccaacctacacccgctctttctccccgtcgtagaggctaaagaagaagaagaagttgatccgttagatcaaaggtggtccccttgtctttcttggtcaatggggtctatagacgagaagatagaccttgaagctcatgaggagctcacatttagctcatcagcagccacgggtgacatagaggccctgcattttgagacggttcatttgcactcccgagctgatgtggcatattcatggatttcgaagaatgttgggaggataagaactccgaggagcctttatgttgtccttttgaatgcaaatatcaccatgttgctaccctgtggtcccttggcaatttggctacatatcgttactgaaaagcagggaatagggatgggtcctcttcttcagcttattgggcatggcaccattaacagagcgtttaggatatgtgactggcaactcgccttgcactcagaaccgagaggtacgattagaaatctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

167

Amino Acids

18.73

Weight (kDa)

5.4

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150381
rosa_laevigata	RLG00000010921 RLG00000020494
rosa_multiflora	Rmu_sc0000061.1_g000028 Rmu_sc0002179.1_g000010 Rmu_ssc0000480.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163170
rosa_rugosa	Rorug02G0421100 Rorug06G0337100
rosa_samantha	Rh2AG480200 Rh2BG492300 Rh2CG466500 Rh2DG501200 Rh6AG448900
rosa_wichuraiana	Rw2G039190 Rw6G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	28
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	487
AgsI	TTSAA	2 cut(s)	143, 310
AluBI	AGCT	5 cut(s)	146, 157, 168, 233, 409
AluI	AGCT	5 cut(s)	146, 157, 168, 233, 409
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AspS9I	GGNCC	4 cut(s)	90, 196, 341, 395
AsuHPI	GGTGA	2 cut(s)	197, 313
AsuII	TTCGAA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	3 cut(s)	90, 341, 395
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	3 cut(s)	90, 341, 395
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	4 cut(s)	90, 196, 341, 395
BmiI	GGNNCC	5 cut(s)	92, 290, 343, 396, 424
Bpu14I	TTCGAA	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	180, 284, 345
Bse1I	ACTGG	1 cut(s)	458
BseDI	CCNNGG	3 cut(s)	180, 284, 345
BseGI	GGATG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	167, 301
BseXI	GCAGC	1 cut(s)	188
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	76, 327
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	76, 327
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	228
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	70, 79
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	485
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	5 cut(s)	92, 290, 343, 396, 424
BspPI	GGATC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	180, 284, 345
BssMI	GATC	2 cut(s)	70, 79
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	405
BstBI	TTCGAA	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	472
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	396
BstKTI	GATC	2 cut(s)	73, 82
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	70, 79
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 415
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	396
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	4 cut(s)	90, 196, 341, 395
Csp6I	GTAC	1 cut(s)	486
CviAII	CATG	4 cut(s)	149, 249, 325, 419
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	1 cut(s)	472
DpnI	GATC	2 cut(s)	72, 81
DpnII	GATC	2 cut(s)	70, 79
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	90, 341, 395
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	157
EcoO109I	RGGNCCY	2 cut(s)	196, 395
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	4 cut(s)	152, 252, 328, 422
FaqI	GGGAC	2 cut(s)	76, 327
FatI	CATG	4 cut(s)	148, 248, 324, 418
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	197
Hin1II	CATG	4 cut(s)	152, 252, 328, 422
HinfI	GANTC	1 cut(s)	5
HphI	GGTGA	2 cut(s)	197, 313
Hpy188I	TCNGA	2 cut(s)	285, 475
Hpy188III	TCNNGA	2 cut(s)	149, 228
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	4 cut(s)	202, 223, 314, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 415
HpyF3I	CTNAG	1 cut(s)	472
Hsp92II	CATG	4 cut(s)	152, 252, 328, 422
Kzo9I	GATC	2 cut(s)	70, 79
LmnI	GCTCC	2 cut(s)	154, 288
LpnPI	CCDG	4 cut(s)	212, 349, 365, 439
Lsp1109I	GCAGC	1 cut(s)	188
MaeIII	GTNAC	3 cut(s)	185, 367, 449
MalI	GATC	2 cut(s)	72, 81
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	2 cut(s)	70, 79
MboII	GAAGA	7 cut(s)	68, 71, 74, 142, 271, 392, 395
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	351
MnlI	CCTC	7 cut(s)	40, 145, 187, 264, 279, 408, 476
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	247
Mva1269I	GAATGC	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	239, 415
NdeII	GATC	2 cut(s)	70, 79
NlaIII	CATG	4 cut(s)	152, 252, 328, 422
NlaIV	GGNNCC	5 cut(s)	92, 290, 343, 396, 424
NmuCI	GTSAC	2 cut(s)	185, 449
NspV	TTCGAA	1 cut(s)	257
PagI	TCATGA	1 cut(s)	148
PctI	GAATGC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	395
Psp124BI	GAGCTC	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	395
PspN4I	GGNNCC	5 cut(s)	92, 290, 343, 396, 424
PspPI	GGNCC	4 cut(s)	90, 196, 341, 395
PspPPI	RGGWCCY	1 cut(s)	395
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	70, 79
Sau96I	GGNCC	4 cut(s)	90, 196, 341, 395
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	9 cut(s)	21, 89, 141, 148, 159, 170, 235, 411, 487
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	3 cut(s)	90, 341, 395
SmiMI	CAYNNNNRTG	1 cut(s)	247
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	185, 449
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	2 cut(s)	185, 449
TspDTI	ATGAA	2 cut(s)	206, 237
TspGWI	ACGGA	1 cut(s)	63
VpaK11BI	GGWCC	3 cut(s)	90, 341, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.