Rw2G039190

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015738
Physical Location & Seq
Forward (+)
64153060 .. 64156972
3913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039190.1

Sequence Viewer

Length: 1074 bp
ATGGGGTCTATAGACGAGAAGATAGACCTTGAAGCTCATGAGGAGCTCACATTTAGCTCATCAGCAGCCACGGGTGACATAGAGGCCCTGCATTTTGAGACGGTTCATTTGCACTCCCGAGCTGATGGGGCATACTCATGGATTTCGAAGAATGTTGGGAGGATAAGAACTCCGAGGAGCCTTTATCTTGTCCTTTTGAATGCAAAGATCACCATGTTGCTACCCTTCCTCTTCTTCAGCTTATTGGGCATGGCACCATTAACAGGGCGTTTAGGATATGTGACTGGTAAGCAACTCGCCTTGCACTCAGAACCGAAAGTTGGGGGACTTATAAATGTCACATTTGTAACTGTACCTGAGATCTTTTCATCACTCTTTGCATTAAGGAAAGACATGATTAGAGTTCAACACGCCCTCGTGAACGTTACATTGTTGTCAATGGCTTTAATGGGGATTATGCTTCCAGCTTTATCCCTTTCACGATTTAGTAGCTGTGTAATGCTAGTGGCATATGCAAACTTGCAGTTCTTTAAGTTTATAAATCATCGTGATCGTCATAGTCCCATTCATGAGGATGAGGATGAGGATGAGGAAGGAATCCAAGATCAAGATTCTTCTCCGGAAATAACTGCTAATGAAGCAATTGGCTGGCTTTCTATCTTAGCTTTGTGGGTGTACATTTTGTCTTCATACCTTGTGGAGGCTATACAGGAAGCATCCGACTCGCTCAATATTCCTGTAGCATTTATCAGTGCCATCCTGCTCCCAGTTGTAGGAAATATGTGGTCTATCCTGTTTTCCATGAGAGAAAAACTTGACCTCACGCTTGGAGTCACTATTGGATTATCTATACAAACATCTATGTTTACAATCCCCTTTTGTGTAATTGTTGGGTGGATAATAGGAAATCCTATGGGCTTGAATTTTCAACTCTTTGAGACTGTTATATTGGTTATGGCTGTGCTAGTAGTGGCATTTATGTTGCAGCAAGGAACGTCAACCGACTTCAAAGGATTGATGCTTATCCTGTGTTATCTCATGGTTGCAGCCAGTTTTTTTGGTACACGTAGATGA

Protein Analysis

357

Amino Acids

39.57

Weight (kDa)

5.25

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 215 - 351 1.6e-12 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 332, 539
AccB1I GGYRCC 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 619
AclI AACGTT 1 cut(s) 423
AcsI RAATTY 1 cut(s) 922
AcuI CTGAAG 1 cut(s) 220
AfaI GTAC 3 cut(s) 354, 677, 1063
AfiI CCNNNNNNNGG 4 cut(s) 263, 320, 700, 773
AflIII ACRYGT 1 cut(s) 1064
AgsI TTSAA 6 cut(s) 32, 199, 407, 922, 929, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 8 cut(s) 35, 46, 57, 122, 240, 467, 492, 665
AluI AGCT 8 cut(s) 35, 46, 57, 122, 240, 467, 492, 665
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 2 cut(s) 92, 932
Ama87I CYCGRG 1 cut(s) 117
Aor13HI TCCGGA 1 cut(s) 619
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 3 cut(s) 65, 985, 1046
ApoI RAATTY 1 cut(s) 922
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 86, 202
AsuII TTCGAA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 117
BanI GGYRCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 48
BauI CACGAG 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 77, 997, 1058
BccI CCATC 2 cut(s) 119, 764
BcgI CGANNNNNNTGC 2 cut(s) 705, 739
BcoDI GTCTC 2 cut(s) 92, 932
BfaI CTAG 2 cut(s) 503, 965
BfmI CTRYAG 2 cut(s) 9, 738
BglII AGATCT 1 cut(s) 360
BisI GCNGC 3 cut(s) 66, 986, 1047
BlsI GCNGC 3 cut(s) 67, 987, 1048
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 179, 255
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 2 cut(s) 725, 1008
BmuI ACTGGG 1 cut(s) 761
BpiI GAAGAC 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 1067
BsaBI GATNNNNATC 1 cut(s) 1022
BsaJI CCNNGG 2 cut(s) 69, 173
BsaWI WCCGGW 1 cut(s) 619
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 320, 700, 773
Bse1I ACTGG 3 cut(s) 289, 767, 1050
Bse8I GATNNNNATC 1 cut(s) 1022
BseAI TCCGGA 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 69, 173
BseGI GGATG 5 cut(s) 580, 586, 592, 716, 756
BseJI GATNNNNATC 1 cut(s) 1022
BseLI CCNNNNNNNGG 4 cut(s) 263, 320, 700, 773
BseMII CTCAG 2 cut(s) 321, 348
BseNI ACTGG 3 cut(s) 289, 767, 1050
BseRI GAGGAG 2 cut(s) 56, 190
BseXI GCAGC 3 cut(s) 77, 997, 1058
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 620
BslFI GGGAC 2 cut(s) 339, 546
BslI CCNNNNNNNGG 4 cut(s) 263, 320, 700, 773
BsmAI GTCTC 2 cut(s) 92, 932
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 339, 546
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 48
Bsp13I TCCGGA 1 cut(s) 619
Bsp1407I TGTACA 1 cut(s) 675
Bsp143I GATC 4 cut(s) 207, 360, 550, 604
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 320, 349
BspEI TCCGGA 1 cut(s) 619
BspHI TCATGA 2 cut(s) 37, 568
BspLI GGNNCC 2 cut(s) 179, 255
BspT104I TTCGAA 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 253
BsrGI TGTACA 1 cut(s) 675
BsrI ACTGG 3 cut(s) 289, 767, 1050
BssECI CCNNGG 2 cut(s) 69, 173
BssMI GATC 4 cut(s) 207, 360, 550, 604
BssSI CACGAG 1 cut(s) 416
Bst2BI CACGAG 1 cut(s) 416
Bst4CI ACNGT 3 cut(s) 103, 352, 943
Bst6I CTCTTC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 675
BstBAI YACGTR 1 cut(s) 1067
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 650
BstDEI CTNAG 3 cut(s) 307, 357, 661
BstDSI CCRYGG 1 cut(s) 69
BstENI CCTNNNNNAGG 1 cut(s) 698
BstF5I GGATG 5 cut(s) 580, 586, 592, 716, 756
BstKTI GATC 4 cut(s) 210, 363, 553, 607
BstMAI GTCTC 2 cut(s) 92, 932
BstMBI GATC 4 cut(s) 207, 360, 550, 604
BstMWI GCNNNNNNNGC 3 cut(s) 128, 246, 638
BstSFI CTRYAG 2 cut(s) 9, 738
BstV1I GCAGC 3 cut(s) 77, 997, 1058
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 5 cut(s) 580, 586, 592, 716, 756
BtsIMutI CAGTG 1 cut(s) 757
Cac8I GCNNGC 1 cut(s) 650
CciI TCATGA 2 cut(s) 37, 568
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 3 cut(s) 353, 676, 1062
CviAII CATG 8 cut(s) 38, 138, 214, 250, 394, 569, 802, 1039
CviQI GTAC 3 cut(s) 353, 676, 1062
DdeI CTNAG 3 cut(s) 307, 357, 661
DpnI GATC 4 cut(s) 209, 362, 552, 606
DpnII GATC 4 cut(s) 207, 360, 550, 604
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 46
EcoNI CCTNNNNNAGG 1 cut(s) 698
EcoO109I RGGNCCY 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 8 cut(s) 41, 141, 217, 253, 397, 572, 805, 1042
FaqI GGGAC 2 cut(s) 339, 546
FatI CATG 8 cut(s) 37, 137, 213, 249, 393, 568, 801, 1038
FauNDI CATATG 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 66, 986, 1047
FokI GGATG 5 cut(s) 587, 593, 599, 703, 743
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 3 cut(s) 66, 986, 1047
FspBI CTAG 2 cut(s) 503, 965
GluI GCNGC 3 cut(s) 66, 986, 1047
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 620
Hin1II CATG 8 cut(s) 41, 141, 217, 253, 397, 572, 805, 1042
HincII GTYRAC 1 cut(s) 999
HindII GTYRAC 1 cut(s) 999
HinfI GANTC 4 cut(s) 597, 611, 722, 831
HpaII CCGG 1 cut(s) 620
HphI GGTGA 2 cut(s) 86, 202
Hpy166II GTNNAC 5 cut(s) 421, 676, 867, 999, 1064
Hpy188I TCNGA 3 cut(s) 174, 310, 721
Hpy188III TCNNGA 8 cut(s) 38, 117, 418, 480, 548, 569, 608, 620
Hpy8I GTNNAC 5 cut(s) 421, 676, 867, 999, 1064
HpyAV CCTTC 2 cut(s) 235, 587
HpyCH4III ACNGT 3 cut(s) 103, 352, 943
HpyCH4IV ACGT 3 cut(s) 423, 995, 1066
HpyCH4V TGCA 9 cut(s) 91, 112, 203, 304, 380, 515, 523, 985, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 246, 638
HpyF3I CTNAG 3 cut(s) 307, 357, 661
HpySE526I ACGT 3 cut(s) 423, 995, 1066
Hsp92II CATG 8 cut(s) 41, 141, 217, 253, 397, 572, 805, 1042
Kpn2I TCCGGA 1 cut(s) 619
Kzo9I GATC 4 cut(s) 207, 360, 550, 604
LmnI GCTCC 3 cut(s) 43, 177, 768
Lsp1109I GCAGC 3 cut(s) 77, 997, 1058
LweI GCATC 2 cut(s) 725, 1008
MaeI CTAG 2 cut(s) 503, 965
MaeII ACGT 3 cut(s) 423, 995, 1066
MaeIII GTNAC 6 cut(s) 74, 280, 337, 346, 424, 832
MalI GATC 4 cut(s) 209, 362, 552, 606
MboI GATC 4 cut(s) 207, 360, 550, 604
MboII GAAGA 6 cut(s) 31, 160, 223, 226, 606, 678
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 3 cut(s) 642, 885, 922
MlyI GAGTC 2 cut(s) 716, 840
MmeI TCCRAC 1 cut(s) 744
MroI TCCGGA 1 cut(s) 619
MseI TTAA 4 cut(s) 260, 383, 446, 531
MslI CAYNNNNRTG 3 cut(s) 136, 573, 1069
MspI CCGG 1 cut(s) 620
MunI CAATTG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 205
MwoI GCNNNNNNNGC 3 cut(s) 128, 246, 638
NdeI CATATG 1 cut(s) 511
NdeII GATC 4 cut(s) 207, 360, 550, 604
NlaIII CATG 8 cut(s) 41, 141, 217, 253, 397, 572, 805, 1042
NlaIV GGNNCC 2 cut(s) 179, 255
NmuCI GTSAC 4 cut(s) 74, 280, 337, 832
NspV TTCGAA 1 cut(s) 146
PagI TCATGA 2 cut(s) 37, 568
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 597, 611
PkrI GCNGC 3 cut(s) 67, 987, 1048
PleI GAGTC 2 cut(s) 716, 839
PpsI GAGTC 2 cut(s) 716, 839
Ppu21I YACGTR 1 cut(s) 1067
PsiI TTATAA 2 cut(s) 332, 539
Psp124BI GAGCTC 1 cut(s) 48
Psp1406I AACGTT 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 179, 255
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 3 cut(s) 354, 677, 1063
RsaNI GTAC 3 cut(s) 353, 676, 1062
RseI CAYNNNNRTG 3 cut(s) 136, 573, 1069
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 4 cut(s) 260, 383, 446, 531
SatI GCNGC 3 cut(s) 66, 986, 1047
Sau3AI GATC 4 cut(s) 207, 360, 550, 604
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 2 cut(s) 716, 840
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 2 cut(s) 725, 1008
SfcI CTRYAG 2 cut(s) 9, 738
SfuI TTCGAA 1 cut(s) 146
SmiMI CAYNNNNRTG 3 cut(s) 136, 573, 1069
Sse9I AATT 3 cut(s) 642, 885, 922
SspI AATATT 1 cut(s) 733
SspMI CTAG 2 cut(s) 503, 965
SstI GAGCTC 1 cut(s) 48
TaaI ACNGT 3 cut(s) 103, 352, 943
TaiI ACGT 3 cut(s) 426, 998, 1069
TaqI TCGA 1 cut(s) 146
TasI AATT 3 cut(s) 642, 885, 922
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 2 cut(s) 597, 611
Tru1I TTAA 4 cut(s) 260, 383, 446, 531
Tru9I TTAA 4 cut(s) 260, 383, 446, 531
TscAI CASTG 1 cut(s) 757
TseFI GTSAC 4 cut(s) 74, 280, 337, 832
TseI GCWGC 3 cut(s) 65, 985, 1046
Tsp45I GTSAC 4 cut(s) 74, 280, 337, 832
TspDTI ATGAA 5 cut(s) 95, 357, 557, 651, 678
TspRI CASTG 1 cut(s) 757
XagI CCTNNNNNAGG 1 cut(s) 698
XapI RAATTY 1 cut(s) 922
XspI CTAG 2 cut(s) 503, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.