Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015738

Physical Location & Seq

Genomic Coordinates Forward (+)

62950137 .. 62954253

Gene Structure 4117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG466500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCTAAAGAAGAAGCTAGAAGAAGTTGATCCATTAGATCAAAGGTGGTCCCCTTGTCTTTCTTGGTCAATGGGGTCTATAGACGAGAAGATAGACCTTGAAGCTCATGAGGAGCTGACATTTGGCTCATCAGCAGCCACGGGTGACATAGAGGCCCTGCATTTTGAGGCGGTTCATTTGCACTCCCGAGCTGATGTGGCATACTCATGGATTTCGAAGAATGTTGGGAGGATAAGAACTCCGAGGAGCCTTTATGTTGTCCTTTTGAATGCAAAGATCACCATGTTGCTACCCTGTGGTCCCTTGGCAATTTGGCTACATATCGTTACTGAAAAGCAGGGATGGGTCCTCTTCTTCAGCTTATTGGGCACGGCACCATTAACAGAGCGTTTGGGATATGTGACTGGTAAGCAACTCGCCTTGCACTCAGAACCGAGAGTTGGGGGACTTATAAATGTCACATTTGTAACTGTACCTCAGATCTTTTCATCACTCTTTGCATTAAGGAAAGACATGATTAGAGTTCAACACGCCCTCGTGAACGTTACATTGTTGTCAATGGCTTTAATGGGGATTATGCTTCCAGCTTTATCCCTTTCACGATTTAGTAGCTGTGTAATGCTAGTGGCATATGCAAACTTGCAGTTCTTTAAGTTTATAAATCATCATGATCGTCATAGTCCCATTCATGAGGATGAGGATGAGGTCAGTCAAGAAGGAATCCAAGATCAAGATTCTTCTCCGGAAATAACTACTAATGAAGCAATTGGCTGGCTTTCTATCTTAGCTTTGTGGGTGTACATTTTGTCTTCATACCTTGTGGAGGCTATACAGGGAGCATCCGACTCGCTCAATATTCCTGTAGCATTTATCAATGCCATCCTGCTCCCACTTGTAGGAAATATGTGGTCTATCCTGTTTTCCATGAGAGAAAAACTTGACCTCACGCTCAGAGTCGCTATTGGATTATCTACACAAACATCTATGTTTACAATCCCCTTTTGTGTAATTGTTGGGTGGATAATAGGAAATCCTATGGACTTGAATTTTCAACTCTTTGAGACTGTTATATTGGTTATGGCTGTGCTAGTAGTGGCATTTATGTTGCAGGTTTGTTATGCATATATCGTTTGCCTCCCCTTGGCCATTATATTACATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

387

Amino Acids

43.27

Weight (kDa)

5.51

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	256 - 369	2.3e-08	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150381
rosa_laevigata	RLG00000010921 RLG00000020494
rosa_multiflora	Rmu_sc0000061.1_g000028 Rmu_sc0002179.1_g000010 Rmu_ssc0000480.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163170
rosa_rugosa	Rorug02G0421100 Rorug06G0337100
rosa_samantha	Rh2AG480200 Rh2BG492300 Rh2CG466500 Rh2DG501200 Rh6AG448900
rosa_wichuraiana	Rw2G039190 Rw6G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	452, 659
Acc36I	ACCTGC	1 cut(s)	1099
AccB1I	GGYRCC	1 cut(s)	373
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	1 cut(s)	170
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	1143
AcsI	RAATTY	1 cut(s)	1045
AcuI	CTGAAG	1 cut(s)	340
AfaI	GTAC	2 cut(s)	474, 800
AfiI	CCNNNNNNNGG	4 cut(s)	440, 823, 896, 1141
AgsI	TTSAA	5 cut(s)	101, 268, 527, 1045, 1052
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	8 cut(s)	16, 104, 115, 191, 360, 587, 612, 788
AluI	AGCT	8 cut(s)	16, 104, 115, 191, 360, 587, 612, 788
Alw26I	GTCTC	1 cut(s)	1055
AlwI	GGATC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	186
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	2 cut(s)	153, 1143
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	1045
AspS9I	GGNCC	4 cut(s)	48, 154, 299, 346
AsuHPI	GGTGA	2 cut(s)	155, 271
AsuII	TTCGAA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	3 cut(s)	48, 299, 346
BaeGI	GKGCMC	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	1145
BanI	GGYRCC	1 cut(s)	373
BauI	CACGAG	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	801
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	2 cut(s)	336, 887
BceAI	ACGGC	1 cut(s)	387
BcgI	CGANNNNNNTGC	2 cut(s)	828, 862
BcoDI	GTCTC	1 cut(s)	1055
BfaI	CTAG	3 cut(s)	17, 623, 1088
BfmI	CTRYAG	2 cut(s)	78, 861
BfuAI	ACCTGC	1 cut(s)	1099
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme18I	GGWCC	3 cut(s)	48, 299, 346
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	4 cut(s)	48, 154, 299, 346
BmiI	GGNNCC	5 cut(s)	50, 248, 301, 347, 375
BmsI	GCATC	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	801
Bpu14I	TTCGAA	1 cut(s)	215
BsaJI	CCNNGG	4 cut(s)	138, 242, 303, 1140
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	4 cut(s)	440, 823, 896, 1141
Bse1I	ACTGG	1 cut(s)	409
BseAI	TCCGGA	1 cut(s)	742
BseDI	CCNNGG	4 cut(s)	138, 242, 303, 1140
BseGI	GGATG	5 cut(s)	347, 700, 706, 839, 879
BseLI	CCNNNNNNNGG	4 cut(s)	440, 823, 896, 1141
BseMII	CTCAG	3 cut(s)	441, 491, 964
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	2 cut(s)	125, 259
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	146
BshFI	GGCC	2 cut(s)	155, 1145
BshNI	GGYRCC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	4 cut(s)	34, 285, 459, 666
BslI	CCNNNNNNNGG	4 cut(s)	440, 823, 896, 1141
BsmAI	GTCTC	1 cut(s)	1055
BsmFI	GGGAC	4 cut(s)	34, 285, 459, 666
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	155, 1145
BsoBI	CYCGRG	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp13I	TCCGGA	1 cut(s)	742
Bsp1407I	TGTACA	1 cut(s)	798
Bsp143I	GATC	6 cut(s)	28, 37, 276, 480, 670, 727
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	155, 1145
BspCNI	CTCAG	3 cut(s)	440, 490, 963
BspEI	TCCGGA	1 cut(s)	742
BspHI	TCATGA	3 cut(s)	106, 667, 688
BspLI	GGNNCC	5 cut(s)	50, 248, 301, 347, 375
BspMI	ACCTGC	1 cut(s)	1099
BspPI	GGATC	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	373
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	4 cut(s)	138, 242, 303, 1140
BssMI	GATC	6 cut(s)	28, 37, 276, 480, 670, 727
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	2 cut(s)	303, 1140
Bst2BI	CACGAG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	472, 1066
Bst6I	CTCTTC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	798
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	773
BstDEI	CTNAG	4 cut(s)	427, 477, 784, 950
BstDSI	CCRYGG	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	5 cut(s)	347, 700, 706, 839, 879
BstKTI	GATC	6 cut(s)	31, 40, 279, 483, 673, 730
BstMAI	GTCTC	1 cut(s)	1055
BstMBI	GATC	6 cut(s)	28, 37, 276, 480, 670, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 366
BstSFI	CTRYAG	2 cut(s)	78, 861
BstSLI	GKGCMC	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	801
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	155, 1145
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	5 cut(s)	347, 700, 706, 839, 879
BveI	ACCTGC	1 cut(s)	1099
Cac8I	GCNNGC	1 cut(s)	773
CciI	TCATGA	3 cut(s)	106, 667, 688
Cfr13I	GGNCC	4 cut(s)	48, 154, 299, 346
Csp6I	GTAC	2 cut(s)	473, 799
CviAII	CATG	7 cut(s)	107, 207, 283, 514, 668, 689, 925
CviQI	GTAC	2 cut(s)	473, 799
DdeI	CTNAG	4 cut(s)	427, 477, 784, 950
DpnI	GATC	6 cut(s)	30, 39, 278, 482, 672, 729
DpnII	GATC	6 cut(s)	28, 37, 276, 480, 670, 727
EaeI	YGGCCR	1 cut(s)	1143
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco130I	CCWWGG	2 cut(s)	303, 1140
Eco47I	GGWCC	3 cut(s)	48, 299, 346
Eco57I	CTGAAG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoO109I	RGGNCCY	2 cut(s)	154, 346
EcoT14I	CCWWGG	2 cut(s)	303, 1140
EcoT22I	ATGCAT	1 cut(s)	1123
ErhI	CCWWGG	2 cut(s)	303, 1140
FaeI	CATG	7 cut(s)	110, 210, 286, 517, 671, 692, 928
FaqI	GGGAC	4 cut(s)	34, 285, 459, 666
FatI	CATG	7 cut(s)	106, 206, 282, 513, 667, 688, 924
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	5 cut(s)	354, 707, 713, 826, 866
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	3 cut(s)	17, 623, 1088
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	155, 1145
HapII	CCGG	1 cut(s)	743
Hin1II	CATG	7 cut(s)	110, 210, 286, 517, 671, 692, 928
HinfI	GANTC	4 cut(s)	720, 734, 845, 954
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	2 cut(s)	155, 271
Hpy166II	GTNNAC	3 cut(s)	541, 799, 990
Hpy188I	TCNGA	5 cut(s)	243, 430, 480, 844, 953
Hpy188III	TCNNGA	9 cut(s)	107, 186, 538, 600, 668, 689, 713, 731, 743
Hpy8I	GTNNAC	3 cut(s)	541, 799, 990
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	2 cut(s)	472, 1066
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	9 cut(s)	160, 181, 272, 424, 500, 635, 643, 1108, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 366
HpyF3I	CTNAG	4 cut(s)	427, 477, 784, 950
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	7 cut(s)	110, 210, 286, 517, 671, 692, 928
Kpn2I	TCCGGA	1 cut(s)	742
Kzo9I	GATC	6 cut(s)	28, 37, 276, 480, 670, 727
LmnI	GCTCC	4 cut(s)	112, 246, 836, 891
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	1 cut(s)	848
MaeI	CTAG	3 cut(s)	17, 623, 1088
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	6 cut(s)	143, 325, 400, 457, 466, 544
MalI	GATC	6 cut(s)	30, 39, 278, 482, 672, 729
MboI	GATC	6 cut(s)	28, 37, 276, 480, 670, 727
MboII	GAAGA	8 cut(s)	22, 32, 100, 229, 343, 346, 729, 801
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	371
MlsI	TGGCCA	1 cut(s)	1145
MluCI	AATT	4 cut(s)	309, 765, 1008, 1045
MluNI	TGGCCA	1 cut(s)	1145
MlyI	GAGTC	2 cut(s)	839, 963
MmeI	TCCRAC	1 cut(s)	867
Mox20I	TGGCCA	1 cut(s)	1145
Mph1103I	ATGCAT	1 cut(s)	1123
MroI	TCCGGA	1 cut(s)	742
MscI	TGGCCA	1 cut(s)	1145
MseI	TTAA	4 cut(s)	380, 503, 566, 651
MslI	CAYNNNNRTG	2 cut(s)	205, 693
Msp20I	TGGCCA	1 cut(s)	1145
MspI	CCGG	1 cut(s)	743
MunI	CAATTG	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	197, 366
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	6 cut(s)	28, 37, 276, 480, 670, 727
NlaIII	CATG	7 cut(s)	110, 210, 286, 517, 671, 692, 928
NlaIV	GGNNCC	5 cut(s)	50, 248, 301, 347, 375
NmuCI	GTSAC	3 cut(s)	143, 400, 457
NsiI	ATGCAT	1 cut(s)	1123
NspV	TTCGAA	1 cut(s)	215
PagI	TCATGA	3 cut(s)	106, 667, 688
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	720, 734
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	2 cut(s)	839, 962
PpsI	GAGTC	2 cut(s)	839, 962
PpuMI	RGGWCCY	1 cut(s)	346
PsiI	TTATAA	2 cut(s)	452, 659
Psp1406I	AACGTT	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	346
PspN4I	GGNNCC	5 cut(s)	50, 248, 301, 347, 375
PspPI	GGNCC	4 cut(s)	48, 154, 299, 346
PspPPI	RGGWCCY	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	480
RsaI	GTAC	2 cut(s)	474, 800
RsaNI	GTAC	2 cut(s)	473, 799
RseI	CAYNNNNRTG	2 cut(s)	205, 693
SaqAI	TTAA	4 cut(s)	380, 503, 566, 651
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	6 cut(s)	28, 37, 276, 480, 670, 727
Sau96I	GGNCC	4 cut(s)	48, 154, 299, 346
SchI	GAGTC	2 cut(s)	839, 963
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	1 cut(s)	848
SfcI	CTRYAG	2 cut(s)	78, 861
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	3 cut(s)	48, 299, 346
SmiMI	CAYNNNNRTG	2 cut(s)	205, 693
Sse9I	AATT	4 cut(s)	309, 765, 1008, 1045
SsiI	CCGC	1 cut(s)	170
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	3 cut(s)	17, 623, 1088
StyI	CCWWGG	2 cut(s)	303, 1140
TaaI	ACNGT	2 cut(s)	472, 1066
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	1 cut(s)	215
TasI	AATT	4 cut(s)	309, 765, 1008, 1045
TatI	WGTACW	1 cut(s)	798
TfiI	GAWTC	2 cut(s)	720, 734
Tru1I	TTAA	4 cut(s)	380, 503, 566, 651
Tru9I	TTAA	4 cut(s)	380, 503, 566, 651
TseFI	GTSAC	3 cut(s)	143, 400, 457
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	3 cut(s)	143, 400, 457
TspDTI	ATGAA	5 cut(s)	164, 477, 677, 774, 801
VpaK11BI	GGWCC	3 cut(s)	48, 299, 346
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	1 cut(s)	1045
XspI	CTAG	3 cut(s)	17, 623, 1088
Zsp2I	ATGCAT	1 cut(s)	1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.