Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015738

Physical Location & Seq

Genomic Coordinates Forward (+)

69152626 .. 69156641

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG492300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGACTCCACTCCCAACCTACACCCGCTCTTTCTCCCCGTCATGGGGTCTATAGACGAGAAGATAGACCTTGAAGCTCATGAGGAGCTCACATTTAGCTCATCAGCAGCCACGGGTGACATAGAGGCCCTGCATTTTGAGACGGTTCATTTGCACTCCCGAGCTGATGGGGCATACTCATGGATTTCGAAGAATGTTGGGAGGATAAGAACTCCGAGGAGCCTTTATCTTGTCCTTTTGAATGCAAACATGTTGCTACCCTGTGGTCCCTTGGCAATTTGGCTACATATCGTTACTGAAAAGCAGCTTATTGGGCATGGCACCATTAACAGGGCGTTTAGGATATGTGACTGGCAACTCACCTTGCACTCAGAACCGAAAGTTGGGGGACTTATAAATGTCACATTTGTAACTGTACCTGAGATCTTTTCATCACTCTTTGCATTAAGGAAAGACATGATTAGAAAATTTCAAGTTTTCAACAAGCAACACGCCCTCGTGAACGTTACATTGTTGTCAATGGCTTTAATGGGGATTATGCTTCCAGCTGTGCTTCACTTTAAGTTCTTTAAGTTTATAAATCATCATGATCGTCATAGTCCCATTCATGAGGATGAGGATGAGGAAGGAATCCAAGATCAAGATTCTTCTCCGGAAATAACTGCTAATGAAGCAATTGGCTGGCTTTCTATCTTAGCTTTGTGGGTGTACATTTTGTCTTCATACCGAGGCTATACAGGAAGCATCCGACTCGCTCAATATTCCTGTAGCATTTATCAGTGCCATCCTACTCCCAGTTGTAGGAAATATGTGGTCTATCCTGTTTTCCATGAGAGAAAAACTTTCTTCTTGCAGGACCTCACGCTTGGAGTCGCTATTGGATTATCTATACAAACATCTATGTTTACAATCCCCTTTTGTGTAATTGTTGGGTGGATAATAGGAAATCCTATGGACTTGAATTTTCAACTCTTTGAGACTGTTATATTGGTTATGGCTGTGCTAGTAGTGGCATTTATGTTGCAGATATGCAATGTCATGACTGAAAAGTCTGTGCACAGTGAACTGAACTTTGAGGTTTCTGATTACATAATCCAAGAGGAGTATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

370

Amino Acids

42.02

Weight (kDa)

5.75

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150381
rosa_laevigata	RLG00000010921 RLG00000020494
rosa_multiflora	Rmu_sc0000061.1_g000028 Rmu_sc0002179.1_g000010 Rmu_ssc0000480.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163170
rosa_rugosa	Rorug02G0421100 Rorug06G0337100
rosa_samantha	Rh2AG480200 Rh2BG492300 Rh2CG466500 Rh2DG501200 Rh6AG448900
rosa_wichuraiana	Rw2G039190 Rw6G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	395, 578
AasI	GACNNNNNNGTC	1 cut(s)	1048
AccB1I	GGYRCC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	652
AciI	CCGC	1 cut(s)	26
AclI	AACGTT	1 cut(s)	504
AcsI	RAATTY	2 cut(s)	467, 961
AfaI	GTAC	2 cut(s)	417, 710
AfiI	CCNNNNNNNGG	6 cut(s)	43, 44, 45, 330, 383, 801
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	6 cut(s)	74, 241, 473, 481, 961, 968
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	7 cut(s)	77, 88, 99, 164, 307, 548, 698
AluI	AGCT	7 cut(s)	77, 88, 99, 164, 307, 548, 698
Alw21I	GWGCWC	2 cut(s)	90, 1059
Alw26I	GTCTC	2 cut(s)	134, 971
Alw44I	GTGCAC	1 cut(s)	1055
Ama87I	CYCGRG	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	1055
ApeKI	GCWGC	2 cut(s)	107, 304
ApoI	RAATTY	2 cut(s)	467, 961
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AspS9I	GGNCC	3 cut(s)	127, 266, 856
AsuHPI	GGTGA	2 cut(s)	128, 352
AsuII	TTCGAA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	2 cut(s)	266, 856
BaeGI	GKGCMC	1 cut(s)	1059
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	2 cut(s)	90, 1059
BbvI	GCAGC	2 cut(s)	119, 316
BccI	CCATC	2 cut(s)	161, 792
BcgI	CGANNNNNNTGC	2 cut(s)	733, 767
BcoDI	GTCTC	2 cut(s)	134, 971
BfaI	CTAG	1 cut(s)	1004
BfmI	CTRYAG	2 cut(s)	51, 766
BglII	AGATCT	1 cut(s)	423
BisI	GCNGC	2 cut(s)	108, 305
BlsI	GCNGC	2 cut(s)	109, 306
Bme18I	GGWCC	2 cut(s)	266, 856
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	3 cut(s)	127, 266, 856
BmiI	GGNNCC	3 cut(s)	221, 268, 322
BmrI	ACTGGG	1 cut(s)	789
BmsI	GCATC	1 cut(s)	753
BmuI	ACTGGG	1 cut(s)	789
BpiI	GAAGAC	1 cut(s)	711
Bpu14I	TTCGAA	1 cut(s)	188
BsaJI	CCNNGG	4 cut(s)	111, 215, 270, 727
BsaWI	WCCGGW	1 cut(s)	652
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 44, 45, 330, 383, 801
Bse1I	ACTGG	2 cut(s)	356, 795
Bse3DI	GCAATG	1 cut(s)	1039
BseAI	TCCGGA	1 cut(s)	652
BseDI	CCNNGG	4 cut(s)	111, 215, 270, 727
BseGI	GGATG	4 cut(s)	619, 625, 744, 784
BseLI	CCNNNNNNNGG	6 cut(s)	43, 44, 45, 330, 383, 801
BseMI	GCAATG	1 cut(s)	1039
BseMII	CTCAG	2 cut(s)	384, 411
BseNI	ACTGG	2 cut(s)	356, 795
BseRI	GAGGAG	2 cut(s)	98, 232
BseSI	GKGCMC	1 cut(s)	1059
BseXI	GCAGC	2 cut(s)	119, 316
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	320
BsiHKAI	GWGCWC	2 cut(s)	90, 1059
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	3 cut(s)	252, 402, 585
BslI	CCNNNNNNNGG	6 cut(s)	43, 44, 45, 330, 383, 801
BsmAI	GTCTC	2 cut(s)	134, 971
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	3 cut(s)	252, 402, 585
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	90, 1059
Bsp13I	TCCGGA	1 cut(s)	652
Bsp1407I	TGTACA	1 cut(s)	708
Bsp143I	GATC	3 cut(s)	423, 589, 637
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	383, 412
BspEI	TCCGGA	1 cut(s)	652
BspHI	TCATGA	4 cut(s)	79, 586, 607, 1038
BspLI	GGNNCC	3 cut(s)	221, 268, 322
BspT104I	TTCGAA	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	1039
BsrGI	TGTACA	1 cut(s)	708
BsrI	ACTGG	2 cut(s)	356, 795
BssECI	CCNNGG	4 cut(s)	111, 215, 270, 727
BssMI	GATC	3 cut(s)	423, 589, 637
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	4 cut(s)	145, 415, 982, 1061
BstAUI	TGTACA	1 cut(s)	708
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	3 cut(s)	370, 420, 694
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	4 cut(s)	619, 625, 744, 784
BstKTI	GATC	3 cut(s)	426, 592, 640
BstMAI	GTCTC	2 cut(s)	134, 971
BstMBI	GATC	3 cut(s)	423, 589, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 313, 671
BstNSI	RCATGY	1 cut(s)	253
BstSFI	CTRYAG	2 cut(s)	51, 766
BstSLI	GKGCMC	1 cut(s)	1059
BstV1I	GCAGC	2 cut(s)	119, 316
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	4 cut(s)	619, 625, 744, 784
BtsIMutI	CAGTG	2 cut(s)	785, 1066
Cac8I	GCNNGC	1 cut(s)	683
CciI	TCATGA	4 cut(s)	79, 586, 607, 1038
Cfr13I	GGNCC	3 cut(s)	127, 266, 856
Csp6I	GTAC	2 cut(s)	416, 709
CviQI	GTAC	2 cut(s)	416, 709
DdeI	CTNAG	3 cut(s)	370, 420, 694
DpnI	GATC	3 cut(s)	425, 591, 639
DpnII	GATC	3 cut(s)	423, 589, 637
DrdI	GACNNNNNNGTC	1 cut(s)	1048
DseDI	GACNNNNNNGTC	1 cut(s)	1048
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	266, 856
Eco53kI	GAGCTC	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	88
EcoO109I	RGGNCCY	2 cut(s)	127, 856
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	134
FaqI	GGGAC	3 cut(s)	252, 402, 585
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	108, 305
FokI	GGATG	4 cut(s)	626, 632, 731, 771
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	108, 305
FspBI	CTAG	1 cut(s)	1004
GluI	GCNGC	2 cut(s)	108, 305
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	653
HinfI	GANTC	5 cut(s)	5, 630, 644, 750, 870
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	2 cut(s)	128, 352
Hpy166II	GTNNAC	5 cut(s)	502, 709, 906, 1057, 1064
Hpy188I	TCNGA	4 cut(s)	216, 373, 749, 1084
Hpy188III	TCNNGA	8 cut(s)	80, 159, 499, 587, 608, 641, 653, 1039
Hpy8I	GTNNAC	5 cut(s)	502, 709, 906, 1057, 1064
HpyAV	CCTTC	1 cut(s)	620
HpyCH4III	ACNGT	4 cut(s)	145, 415, 982, 1061
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	9 cut(s)	133, 154, 245, 367, 443, 853, 1024, 1032, 1057
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 313, 671
HpyF3I	CTNAG	3 cut(s)	370, 420, 694
HpySE526I	ACGT	1 cut(s)	504
Kpn2I	TCCGGA	1 cut(s)	652
Kzo9I	GATC	3 cut(s)	423, 589, 637
LmnI	GCTCC	2 cut(s)	85, 219
Lsp1109I	GCAGC	2 cut(s)	119, 316
LweI	GCATC	1 cut(s)	753
MaeI	CTAG	1 cut(s)	1004
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	6 cut(s)	116, 292, 347, 400, 409, 505
MalI	GATC	3 cut(s)	425, 591, 639
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	3 cut(s)	423, 589, 637
MboII	GAAGA	5 cut(s)	73, 202, 639, 711, 838
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	2 cut(s)	90, 1059
MluCI	AATT	5 cut(s)	276, 467, 675, 924, 961
MlyI	GAGTC	2 cut(s)	744, 879
MmeI	TCCRAC	1 cut(s)	772
MroI	TCCGGA	1 cut(s)	652
MseI	TTAA	5 cut(s)	327, 446, 527, 561, 570
MslI	CAYNNNNRTG	2 cut(s)	178, 612
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	1 cut(s)	653
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	170, 313, 671
NdeII	GATC	3 cut(s)	423, 589, 637
NlaIV	GGNNCC	3 cut(s)	221, 268, 322
NmuCI	GTSAC	3 cut(s)	116, 347, 400
NspI	RCATGY	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	188
PagI	TCATGA	4 cut(s)	79, 586, 607, 1038
PciI	ACATGT	1 cut(s)	249
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	630, 644
PkrI	GCNGC	2 cut(s)	109, 306
PleI	GAGTC	2 cut(s)	744, 878
PpsI	GAGTC	2 cut(s)	744, 878
PpuMI	RGGWCCY	1 cut(s)	856
PscI	ACATGT	1 cut(s)	249
PsiI	TTATAA	2 cut(s)	395, 578
Psp124BI	GAGCTC	1 cut(s)	90
Psp1406I	AACGTT	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	856
PspN4I	GGNNCC	3 cut(s)	221, 268, 322
PspPI	GGNCC	3 cut(s)	127, 266, 856
PspPPI	RGGWCCY	1 cut(s)	856
PsuI	RGATCY	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	2 cut(s)	417, 710
RsaNI	GTAC	2 cut(s)	416, 709
RseI	CAYNNNNRTG	2 cut(s)	178, 612
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	5 cut(s)	327, 446, 527, 561, 570
SatI	GCNGC	2 cut(s)	108, 305
Sau3AI	GATC	3 cut(s)	423, 589, 637
Sau96I	GGNCC	3 cut(s)	127, 266, 856
SchI	GAGTC	2 cut(s)	744, 879
SduI	GDGCHC	2 cut(s)	90, 1059
SfaNI	GCATC	1 cut(s)	753
SfcI	CTRYAG	2 cut(s)	51, 766
SfuI	TTCGAA	1 cut(s)	188
SinI	GGWCC	2 cut(s)	266, 856
SmiMI	CAYNNNNRTG	2 cut(s)	178, 612
Sse9I	AATT	5 cut(s)	276, 467, 675, 924, 961
SsiI	CCGC	1 cut(s)	26
SspI	AATATT	1 cut(s)	761
SspMI	CTAG	1 cut(s)	1004
SstI	GAGCTC	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	4 cut(s)	145, 415, 982, 1061
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	188
TasI	AATT	5 cut(s)	276, 467, 675, 924, 961
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	630, 644
Tru1I	TTAA	5 cut(s)	327, 446, 527, 561, 570
Tru9I	TTAA	5 cut(s)	327, 446, 527, 561, 570
TscAI	CASTG	2 cut(s)	785, 1066
TseFI	GTSAC	3 cut(s)	116, 347, 400
TseI	GCWGC	2 cut(s)	107, 304
Tsp45I	GTSAC	3 cut(s)	116, 347, 400
TspDTI	ATGAA	5 cut(s)	137, 420, 596, 684, 711
TspRI	CASTG	2 cut(s)	785, 1066
VneI	GTGCAC	1 cut(s)	1055
VpaK11BI	GGWCC	2 cut(s)	266, 856
XapI	RAATTY	2 cut(s)	467, 961
XceI	RCATGY	1 cut(s)	253
XspI	CTAG	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.