RLG00000010921

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015738
Physical Location & Seq
Forward (+)
5414107 .. 5416016
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010921

Sequence Viewer

Length: 516 bp
ATGTGGAGACCTTGTAAGTCATCTGAATCTGATGAACCTGTTTGCACTGCCTGGTGGAGTTCTAGACCCCCATACTCAATGATGAACAAAATAACACCATCCCTTTTGGATCCCAGCGTAGATAATATTCAGAACCATCCCCTGGCCCAGCACGTATCACAAAAACGACCGCGTTTCGGTTTGCTCAGTCCCCGCTATTATTCGGTTCTGAGTAGCAGTGGATCTCACTCTGCTGCTCACTGCCCTCCTCGCTCTTCAACTTCTAGTGTTTACCTTTCTGTAAAAGCTTCGAATTTGTTCAGGAAGCTGTATTTCCCATTCGAGAAGCAACCGGTACGCCGCTGCAACCTGCTGGCCTCCTCTAATGGTTTGGTGTTTGTAGCATTGGATGAGAGGTTTAACATCTGGAACCCGTCGACTCGATTCTTCATGATCAAGAAACTGCCTGACATTGGTGCTGGTTATTTGTCGGTCACTGACAACTACAAGGTTCTGGCAGGCTACATGCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

172

Amino Acids

19.36

Weight (kDa)

9.69

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 142
AccI GTMKAC 1 cut(s) 416
AccII CGCG 1 cut(s) 172
AciI CCGC 3 cut(s) 170, 193, 340
AclWI GGATC 3 cut(s) 104, 117, 229
AcsI RAATTY 1 cut(s) 292
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 3 cut(s) 142, 176, 452
AgeI ACCGGT 1 cut(s) 331
AgsI TTSAA 1 cut(s) 258
AjnI CCWGG 2 cut(s) 50, 141
AluBI AGCT 2 cut(s) 287, 307
AluI AGCT 2 cut(s) 287, 307
AlwI GGATC 3 cut(s) 104, 117, 229
AoxI GGCC 2 cut(s) 144, 354
ApeKI GCWGC 2 cut(s) 233, 342
ApoI RAATTY 1 cut(s) 292
AsiGI ACCGGT 1 cut(s) 331
Asp700I GAANNNNTTC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 290
BamHI GGATCC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 220, 329
BccI CCATC 2 cut(s) 106, 144
BciT130I CCWGG 2 cut(s) 52, 143
BclI TGATCA 1 cut(s) 432
BfaI CTAG 2 cut(s) 63, 264
BfuAI ACCTGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 234, 340, 343
BlsI GCNGC 3 cut(s) 235, 341, 344
Bme1390I CCNGG 2 cut(s) 52, 143
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 111, 410
BmrFI CCNGG 2 cut(s) 52, 143
Bpu14I TTCGAA 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 176, 452
Bse118I RCCGGY 1 cut(s) 331
BseBI CCWGG 2 cut(s) 52, 143
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 98, 136, 394
BseLI CCNNNNNNNGG 3 cut(s) 142, 176, 452
BseMII CTCAG 2 cut(s) 199, 200
BseRI GAGGAG 2 cut(s) 237, 349
BseXI GCAGC 2 cut(s) 220, 329
BseYI CCCAGC 2 cut(s) 113, 147
Bsh1236I CGCG 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 2 cut(s) 146, 356
BshTI ACCGGT 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 3 cut(s) 142, 176, 452
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 2 cut(s) 146, 356
Bsp119I TTCGAA 1 cut(s) 290
Bsp143I GATC 3 cut(s) 109, 221, 432
BspACI CCGC 3 cut(s) 170, 193, 340
BspANI GGCC 2 cut(s) 146, 356
BspCNI CTCAG 2 cut(s) 198, 201
BspFNI CGCG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 111, 410
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 3 cut(s) 104, 117, 229
BspQI GCTCTTC 1 cut(s) 259
BspT104I TTCGAA 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 109, 221, 432
Bst2UI CCWGG 2 cut(s) 52, 143
Bst6I CTCTTC 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 154
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 354, 499, 510
BstDEI CTNAG 3 cut(s) 185, 209, 513
BstF5I GGATG 3 cut(s) 98, 136, 394
BstFNI CGCG 1 cut(s) 172
BstKTI GATC 3 cut(s) 112, 224, 435
BstMBI GATC 3 cut(s) 109, 221, 432
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNI CCWGG 2 cut(s) 52, 143
BstNSI RCATGY 2 cut(s) 508, 512
BstSCI CCNGG 2 cut(s) 50, 141
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 220, 329
BstX2I RGATCY 2 cut(s) 109, 221
BstYI RGATCY 2 cut(s) 109, 221
BsuRI GGCC 2 cut(s) 146, 356
BtsCI GGATG 3 cut(s) 98, 136, 394
BtsI GCAGTG 3 cut(s) 45, 223, 238
BtsIMutI CAGTG 4 cut(s) 45, 223, 238, 474
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 354, 499, 510
CciI TCATGA 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 335
CspAI ACCGGT 1 cut(s) 331
CviAII CATG 3 cut(s) 430, 505, 509
CviJI RGCY 5 cut(s) 146, 287, 307, 356, 501
CviKI_1 RGCY 5 cut(s) 146, 287, 307, 356, 501
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 3 cut(s) 185, 209, 513
DpnI GATC 3 cut(s) 111, 223, 434
DpnII GATC 3 cut(s) 109, 221, 432
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 50, 141
EcoT22I ATGCAT 1 cut(s) 510
FaeI CATG 3 cut(s) 433, 508, 512
FaiI YATR 4 cut(s) 73, 431, 506, 510
FaqI GGGAC 1 cut(s) 174
FatI CATG 3 cut(s) 429, 504, 508
FauI CCCGC 1 cut(s) 200
FbaI TGATCA 1 cut(s) 432
FblI GTMKAC 1 cut(s) 416
Fnu4HI GCNGC 3 cut(s) 234, 340, 343
FokI GGATG 3 cut(s) 85, 123, 401
Fsp4HI GCNGC 3 cut(s) 234, 340, 343
FspBI CTAG 2 cut(s) 63, 264
GluI GCNGC 3 cut(s) 234, 340, 343
GsaI CCCAGC 2 cut(s) 117, 151
HaeIII GGCC 2 cut(s) 146, 356
HapII CCGG 1 cut(s) 332
Hin1II CATG 3 cut(s) 433, 508, 512
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 3 cut(s) 26, 418, 423
HpaII CCGG 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 271, 417
Hpy188I TCNGA 4 cut(s) 25, 31, 132, 210
Hpy188III TCNNGA 6 cut(s) 63, 301, 322, 406, 430, 436
Hpy8I GTNNAC 2 cut(s) 271, 417
Hpy99I CGWCG 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 45, 345, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 3 cut(s) 185, 209, 513
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 3 cut(s) 433, 508, 512
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 3 cut(s) 109, 221, 432
LguI GCTCTTC 1 cut(s) 259
Lsp1109I GCAGC 2 cut(s) 220, 329
MaeI CTAG 2 cut(s) 63, 264
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 472
MalI GATC 3 cut(s) 111, 223, 434
MboI GATC 3 cut(s) 109, 221, 432
MboII GAAGA 2 cut(s) 246, 418
MflI RGATCY 2 cut(s) 109, 221
MluCI AATT 1 cut(s) 292
MlyI GAGTC 1 cut(s) 412
MnlI CCTC 5 cut(s) 255, 258, 367, 370, 387
Mph1103I ATGCAT 1 cut(s) 510
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 52, 143
MvaI CCWGG 2 cut(s) 52, 143
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 249
NdeII GATC 3 cut(s) 109, 221, 432
NlaIII CATG 3 cut(s) 433, 508, 512
NlaIV GGNNCC 2 cut(s) 111, 410
NmuCI GTSAC 1 cut(s) 472
NsiI ATGCAT 1 cut(s) 510
NspI RCATGY 2 cut(s) 508, 512
NspV TTCGAA 1 cut(s) 290
PaeI GCATGC 1 cut(s) 512
PagI TCATGA 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 2 cut(s) 26, 423
PflMI CCANNNNNTGG 1 cut(s) 142
PinAI ACCGGT 1 cut(s) 331
PkrI GCNGC 3 cut(s) 235, 341, 344
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 50, 141
PspFI CCCAGC 2 cut(s) 113, 147
PspGI CCWGG 2 cut(s) 50, 141
PspN4I GGNNCC 2 cut(s) 111, 410
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 2 cut(s) 109, 221
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
SalI GTCGAC 1 cut(s) 415
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 3 cut(s) 234, 340, 343
Sau3AI GATC 3 cut(s) 109, 221, 432
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 2 cut(s) 52, 143
SetI ASST 9 cut(s) 13, 40, 156, 276, 289, 309, 351, 398, 492
SfuI TTCGAA 1 cut(s) 290
SphI GCATGC 1 cut(s) 512
Sse9I AATT 1 cut(s) 292
SsiI CCGC 3 cut(s) 170, 193, 340
SspI AATATT 1 cut(s) 127
SspMI CTAG 2 cut(s) 63, 264
StyD4I CCNGG 2 cut(s) 50, 141
TaiI ACGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 290, 321, 416, 421
TaqII GACCGA 1 cut(s) 460
TasI AATT 1 cut(s) 292
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 2 cut(s) 26, 423
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 4 cut(s) 52, 223, 245, 481
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 2 cut(s) 233, 342
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 48, 98, 418
TspRI CASTG 4 cut(s) 52, 223, 245, 481
Van91I CCANNNNNTGG 1 cut(s) 142
XapI RAATTY 1 cut(s) 292
XbaI TCTAGA 1 cut(s) 62
XceI RCATGY 2 cut(s) 508, 512
XmiI GTMKAC 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 2 cut(s) 63, 264
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.