Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000061.1

Orthogroup ID

OG0015738

Physical Location & Seq

Genomic Coordinates Forward (+)

128619 .. 130795

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000061.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggactccactcccaacctacacccgctctttctccccgtcgtagaggctaaagaagaagaagaagttgatccattagatcaaaggtggtccccttgtctttcttggtcaatggggtctatagacgagaagatagaccttgaagctcatgaggagctcacatttagctcatcagcagccacgggtgacatagaggccctgcattttgagacggttcatttgcactcccgagctgatgtggcatattcatggatttcgaagaatgttgggaggataagaactccgaggagcctttatgttttccttttgaatgcaaagatcaccatgtttctaccctgtggtcccttggcaatttggctacatatcgttactgaaaagcagacttgggagtcaccgtggttcggacatgattcctctgctaggaagctgcatttcccattcgagaagcaactggtacgctgctgcaacctgctggcctcctctaatggtttggtgtttgtagcattggatgagcggtttaacatctggaacccgtcgactcgattcttcatgatcaagaaactgcctgacattggtgctggttatttgtcggccactaacaactacaaggttctggcaggctacatgcctaggtcaagaggaggggggggtggggggaggagggaatggaggataatggcgaggtggtccacaatttctcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

234

Amino Acids

26.62

Weight (kDa)

6.75

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150381
rosa_laevigata	RLG00000010921 RLG00000020494
rosa_multiflora	Rmu_sc0000061.1_g000028 Rmu_sc0002179.1_g000010 Rmu_ssc0000480.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163170
rosa_rugosa	Rorug02G0421100 Rorug06G0337100
rosa_samantha	Rh2AG480200 Rh2BG492300 Rh2CG466500 Rh2DG501200 Rh6AG448900
rosa_wichuraiana	Rw2G039190 Rw6G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	477
AccBSI	CCGCTC	2 cut(s)	28, 514
AccI	GTMKAC	1 cut(s)	536
AciI	CCGC	2 cut(s)	26, 514
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	591
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	3 cut(s)	401, 420, 572
AgsI	TTSAA	2 cut(s)	143, 310
AluBI	AGCT	5 cut(s)	146, 157, 168, 233, 427
AluI	AGCT	5 cut(s)	146, 157, 168, 233, 427
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	3 cut(s)	195, 474, 591
ApeKI	GCWGC	4 cut(s)	176, 427, 459, 462
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AspA2I	CCTAGG	1 cut(s)	629
AspS9I	GGNCC	4 cut(s)	90, 196, 341, 687
AsuHPI	GGTGA	3 cut(s)	197, 313, 384
AsuII	TTCGAA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	3 cut(s)	90, 341, 687
AvrII	CCTAGG	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	4 cut(s)	188, 414, 446, 449
BclI	TGATCA	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	420, 630
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	477
BisI	GCNGC	4 cut(s)	177, 428, 460, 463
BlnI	CCTAGG	1 cut(s)	629
BlsI	GCNGC	4 cut(s)	178, 429, 461, 464
Bme18I	GGWCC	3 cut(s)	90, 341, 687
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	4 cut(s)	90, 196, 341, 687
BmiI	GGNNCC	4 cut(s)	92, 290, 343, 530
Bpu14I	TTCGAA	1 cut(s)	257
BsaJI	CCNNGG	5 cut(s)	180, 284, 345, 395, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	401, 420, 572
Bse1I	ACTGG	1 cut(s)	456
BseDI	CCNNGG	5 cut(s)	180, 284, 345, 395, 629
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	3 cut(s)	401, 420, 572
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	5 cut(s)	167, 301, 469, 654, 673
BseXI	GCAGC	4 cut(s)	188, 414, 446, 449
BshFI	GGCC	3 cut(s)	197, 476, 593
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	76, 327
BslI	CCNNNNNNNGG	3 cut(s)	401, 420, 572
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	76, 327
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	197, 476, 593
BsoBI	CYCGRG	1 cut(s)	228
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	70, 79, 318, 552
BspACI	CCGC	2 cut(s)	26, 514
BspANI	GGCC	3 cut(s)	197, 476, 593
BspHI	TCATGA	2 cut(s)	148, 549
BspLI	GGNNCC	4 cut(s)	92, 290, 343, 530
BspMI	ACCTGC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	257
BsrBI	CCGCTC	2 cut(s)	28, 514
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	5 cut(s)	180, 284, 345, 395, 629
BssMI	GATC	4 cut(s)	70, 79, 318, 552
BssT1I	CCWWGG	2 cut(s)	345, 629
Bst4CI	ACNGT	2 cut(s)	214, 396
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	474, 619
BstDSI	CCRYGG	2 cut(s)	180, 395
BstENI	CCTNNNNNAGG	1 cut(s)	418
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	4 cut(s)	73, 82, 321, 555
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	4 cut(s)	70, 79, 318, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	628
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	4 cut(s)	188, 414, 446, 449
BsuRI	GGCC	3 cut(s)	197, 476, 593
BtgI	CCRYGG	2 cut(s)	180, 395
BtsCI	GGATG	1 cut(s)	514
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	474, 619
CciI	TCATGA	2 cut(s)	148, 549
Cfr13I	GGNCC	4 cut(s)	90, 196, 341, 687
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	6 cut(s)	149, 249, 325, 407, 550, 625
CviQI	GTAC	1 cut(s)	455
DpnI	GATC	4 cut(s)	72, 81, 320, 554
DpnII	GATC	4 cut(s)	70, 79, 318, 552
DrdI	GACNNNNNNGTC	1 cut(s)	388
DseDI	GACNNNNNNGTC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	591
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	345, 629
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	90, 341, 687
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	345, 629
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	2 cut(s)	345, 629
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	6 cut(s)	152, 252, 328, 410, 553, 628
FaqI	GGGAC	2 cut(s)	76, 327
FatI	CATG	6 cut(s)	148, 248, 324, 406, 549, 624
FauI	CCCGC	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	536
Fnu4HI	GCNGC	4 cut(s)	177, 428, 460, 463
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	177, 428, 460, 463
FspBI	CTAG	2 cut(s)	420, 630
GluI	GCNGC	4 cut(s)	177, 428, 460, 463
HaeIII	GGCC	3 cut(s)	197, 476, 593
Hin1II	CATG	6 cut(s)	152, 252, 328, 410, 553, 628
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	5 cut(s)	5, 389, 410, 538, 543
HphI	GGTGA	3 cut(s)	197, 313, 384
Hpy166II	GTNNAC	2 cut(s)	537, 690
Hpy188I	TCNGA	2 cut(s)	285, 404
Hpy188III	TCNNGA	7 cut(s)	149, 228, 442, 526, 550, 556, 636
Hpy8I	GTNNAC	2 cut(s)	537, 690
Hpy99I	CGWCG	2 cut(s)	44, 538
HpyCH4III	ACNGT	2 cut(s)	214, 396
HpyCH4V	TGCA	5 cut(s)	202, 223, 314, 430, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
Hsp92II	CATG	6 cut(s)	152, 252, 328, 410, 553, 628
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	70, 79, 318, 552
LmnI	GCTCC	2 cut(s)	154, 288
Lsp1109I	GCAGC	4 cut(s)	188, 414, 446, 449
MaeI	CTAG	2 cut(s)	420, 630
MaeIII	GTNAC	3 cut(s)	185, 367, 390
MalI	GATC	4 cut(s)	72, 81, 320, 554
MbiI	CCGCTC	2 cut(s)	28, 514
MboI	GATC	4 cut(s)	70, 79, 318, 552
MboII	GAAGA	6 cut(s)	68, 71, 74, 142, 271, 538
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	351, 693
MlyI	GAGTC	2 cut(s)	398, 532
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	247
Mva1269I	GAATGC	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	4 cut(s)	70, 79, 318, 552
NlaIII	CATG	6 cut(s)	152, 252, 328, 410, 553, 628
NlaIV	GGNNCC	4 cut(s)	92, 290, 343, 530
NmuCI	GTSAC	2 cut(s)	185, 390
NspI	RCATGY	1 cut(s)	628
NspV	TTCGAA	1 cut(s)	257
PagI	TCATGA	2 cut(s)	148, 549
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	410, 543
PkrI	GCNGC	4 cut(s)	178, 429, 461, 464
PleI	GAGTC	2 cut(s)	397, 532
PpsI	GAGTC	2 cut(s)	397, 532
Psp124BI	GAGCTC	1 cut(s)	159
PspN4I	GGNNCC	4 cut(s)	92, 290, 343, 530
PspPI	GGNCC	4 cut(s)	90, 196, 341, 687
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	4 cut(s)	177, 428, 460, 463
Sau3AI	GATC	4 cut(s)	70, 79, 318, 552
Sau96I	GGNCC	4 cut(s)	90, 196, 341, 687
SchI	GAGTC	2 cut(s)	398, 532
SduI	GDGCHC	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	3 cut(s)	90, 341, 687
SmiMI	CAYNNNNRTG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	351, 693
SsiI	CCGC	2 cut(s)	26, 514
SspMI	CTAG	2 cut(s)	420, 630
SstI	GAGCTC	1 cut(s)	159
StyI	CCWWGG	2 cut(s)	345, 629
TaaI	ACNGT	2 cut(s)	214, 396
TaqI	TCGA	4 cut(s)	257, 441, 536, 541
TasI	AATT	2 cut(s)	351, 693
TfiI	GAWTC	2 cut(s)	410, 543
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TseFI	GTSAC	2 cut(s)	185, 390
TseI	GCWGC	4 cut(s)	176, 427, 459, 462
Tsp45I	GTSAC	2 cut(s)	185, 390
TspDTI	ATGAA	3 cut(s)	206, 237, 538
VpaK11BI	GGWCC	3 cut(s)	90, 341, 687
XagI	CCTNNNNNAGG	1 cut(s)	418
XceI	RCATGY	1 cut(s)	628
XmaJI	CCTAGG	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	536
XspI	CTAG	2 cut(s)	420, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.