Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015738

Physical Location & Seq

Genomic Coordinates Forward (+)

68051135 .. 68053003

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51972

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATCATGGACTCCACTCCCAACCTACACCCGCTCTTTCTCCCCGTCGTAGAGGCTAAAGAAGAAGAAGAAGTTGATCCGTTAGATCAAAGGTGGTCCCCTTGTCTTTCTTGGTCAATGGGGTCTATAGACGAGAAGATAGACCTTGAAGCTCATGAGGAGCTCACATTTAGCTCATCAGCAGCCACGGGTGACATAGAGGCCCTGCATTTTGAGACGGTTCATTTGCACTCCCGAGCTGATGGGGCATACTCATGGATTTCGAAGAATGTTGGGAGGATAAGAACTCCGAGGAGCCTTTATCTTGTCCTTTTGAATGCAAACATGTTGCTACCCTGTGGTCCCTTGGCAATTTGGCTACATATCGTTACTGAAAAGCAGCTTATTGGGCATGGCACCATTAACAGGGCGTTTAGGATATGTGACTGGCAACTCACCTTGCACTCAGAACCGAAAGTTGGGGGACTTATAAATGTCACATTTGTAACTGTACCTGAGATCTTTTCATCACTCTTTGCATTAAGGAAAGACATGATTAGAGTTGTTCAGAGATCTTTATTGGGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

189

Amino Acids

21.32

Weight (kDa)

5.57

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150381
rosa_laevigata	RLG00000010921 RLG00000020494
rosa_multiflora	Rmu_sc0000061.1_g000028 Rmu_sc0002179.1_g000010 Rmu_ssc0000480.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163170
rosa_rugosa	Rorug02G0421100 Rorug06G0337100
rosa_samantha	Rh2AG480200 Rh2BG492300 Rh2CG466500 Rh2DG501200 Rh6AG448900
rosa_wichuraiana	Rw2G039190 Rw6G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	395
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	2 cut(s)	405, 458
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	149, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	5 cut(s)	152, 163, 174, 239, 382
AluI	AGCT	5 cut(s)	152, 163, 174, 239, 382
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	182, 379
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AspS9I	GGNCC	3 cut(s)	96, 202, 341
AsuHPI	GGTGA	2 cut(s)	203, 427
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	2 cut(s)	96, 341
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	194, 391
BccI	CCATC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	2 cut(s)	498, 551
BisI	GCNGC	2 cut(s)	183, 380
BlsI	GCNGC	2 cut(s)	184, 381
Bme18I	GGWCC	2 cut(s)	96, 341
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	3 cut(s)	96, 202, 341
BmiI	GGNNCC	4 cut(s)	98, 296, 343, 397
Bpu14I	TTCGAA	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	186, 290, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 458
Bse1I	ACTGG	1 cut(s)	431
BseDI	CCNNGG	3 cut(s)	186, 290, 345
BseLI	CCNNNNNNNGG	2 cut(s)	405, 458
BseMII	CTCAG	2 cut(s)	459, 486
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	2 cut(s)	173, 307
BseXI	GCAGC	2 cut(s)	194, 391
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	234
BslFI	GGGAC	3 cut(s)	82, 327, 477
BslI	CCNNNNNNNGG	2 cut(s)	405, 458
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	3 cut(s)	82, 327, 477
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	3, 76, 85, 498, 551
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	458, 487
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	4 cut(s)	98, 296, 343, 397
BspPI	GGATC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	3 cut(s)	186, 290, 345
BssMI	GATC	5 cut(s)	3, 76, 85, 498, 551
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	220, 490
BstBI	TTCGAA	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	445, 495
BstDSI	CCRYGG	1 cut(s)	186
BstKTI	GATC	5 cut(s)	6, 79, 88, 501, 554
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	5 cut(s)	3, 76, 85, 498, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 388
BstNSI	RCATGY	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	194, 391
BstX2I	RGATCY	2 cut(s)	498, 551
BstYI	RGATCY	2 cut(s)	498, 551
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	96, 202, 341
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	6 cut(s)	7, 155, 255, 325, 392, 532
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	2 cut(s)	445, 495
DpnI	GATC	5 cut(s)	5, 78, 87, 500, 553
DpnII	GATC	5 cut(s)	3, 76, 85, 498, 551
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	96, 341
Eco53kI	GAGCTC	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	6 cut(s)	10, 158, 258, 328, 395, 535
FaqI	GGGAC	3 cut(s)	82, 327, 477
FatI	CATG	6 cut(s)	6, 154, 254, 324, 391, 531
FauI	CCCGC	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	183, 380
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	183, 380
GluI	GCNGC	2 cut(s)	183, 380
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	6 cut(s)	10, 158, 258, 328, 395, 535
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	2 cut(s)	203, 427
Hpy188I	TCNGA	3 cut(s)	291, 448, 549
Hpy188III	TCNNGA	2 cut(s)	155, 234
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	220, 490
HpyCH4V	TGCA	5 cut(s)	208, 229, 320, 442, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 388
HpyF3I	CTNAG	2 cut(s)	445, 495
Hsp92II	CATG	6 cut(s)	10, 158, 258, 328, 395, 535
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 76, 85, 498, 551
LmnI	GCTCC	2 cut(s)	160, 294
LpnPI	CCDG	5 cut(s)	218, 349, 391, 412, 507
Lsp1109I	GCAGC	2 cut(s)	194, 391
MaeIII	GTNAC	5 cut(s)	191, 367, 422, 475, 484
MalI	GATC	5 cut(s)	5, 78, 87, 500, 553
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	5 cut(s)	3, 76, 85, 498, 551
MboII	GAAGA	5 cut(s)	74, 77, 80, 148, 277
MflI	RGATCY	2 cut(s)	498, 551
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	5 cut(s)	46, 151, 193, 270, 285
MseI	TTAA	2 cut(s)	402, 521
MslI	CAYNNNNRTG	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	322
MwoI	GCNNNNNNNGC	2 cut(s)	245, 388
NdeII	GATC	5 cut(s)	3, 76, 85, 498, 551
NlaIII	CATG	6 cut(s)	10, 158, 258, 328, 395, 535
NlaIV	GGNNCC	4 cut(s)	98, 296, 343, 397
NmuCI	GTSAC	3 cut(s)	191, 422, 475
NspI	RCATGY	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	263
PagI	TCATGA	1 cut(s)	154
PciI	ACATGT	1 cut(s)	324
PctI	GAATGC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	184, 381
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PscI	ACATGT	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	165
PspN4I	GGNNCC	4 cut(s)	98, 296, 343, 397
PspPI	GGNCC	3 cut(s)	96, 202, 341
PsuI	RGATCY	2 cut(s)	498, 551
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	402, 521
SatI	GCNGC	2 cut(s)	183, 380
Sau3AI	GATC	5 cut(s)	3, 76, 85, 498, 551
Sau96I	GGNCC	3 cut(s)	96, 202, 341
SchI	GAGTC	1 cut(s)	5
SduI	GDGCHC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	2 cut(s)	96, 341
SmiMI	CAYNNNNRTG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	220, 490
TaqI	TCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	351
Tru1I	TTAA	2 cut(s)	402, 521
Tru9I	TTAA	2 cut(s)	402, 521
TseFI	GTSAC	3 cut(s)	191, 422, 475
TseI	GCWGC	2 cut(s)	182, 379
Tsp45I	GTSAC	3 cut(s)	191, 422, 475
TspDTI	ATGAA	2 cut(s)	212, 495
TspGWI	ACGGA	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	96, 341
XceI	RCATGY	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.