Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015738

Physical Location & Seq

Genomic Coordinates Forward (+)

5521441 .. 5526615

Gene Structure 5175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGACCTCCTCAGTGCCTGAAACTAAATCTTGCTATCCTATTGCCCGAGAATTCTCCAACATGTGGAGACCTTGTAAGTCATCTGAATCTGATGAACCTGTTTGCACTGCCTGGTGGAGTTCCAGACCCCCATACTCAATGATGAACAAAATAACACCATCCCTTTTGGATCCCAGCGTAGATAATATTCAGATTTGTAACAGTAGCAATGGCCTTAAGGAATTACCCGAAGATGTTATAGAGAATAACATCCCGACCGAGTGCCGGGTCAAATCCTTAATCCGATTCACCTGCGTTTTGAAACGGTGGCGTTATGTTATACTATACAGCCCCAAATTTGCCAAATTCCAATATAGATCAGCTTCGACCACAAATTTATCACACACGGAATCTTCGTCTCCAAAGAACGGCTCTCCTCAACTCAACTCCCTAGACTTGGAGTCACCGTGGTTCGGACATGATTCCTCGCTAGGAAGCTGCATTTCCCATCCGAGAAGCAACGGTATCTTTGCTGCAACCTCGCCGGCCTCCTCTAATGGTTTGGTGTTTGTAGCATTGGATGAGAGGTTTAACATCCGGAACCCGTCGACTCGATTCTTCATGATCAAGAAACCGCCGACATTGGTGCTGGTTATTTGTCGGCCACCGACAACTACAAGGTTCGGCGGGCTACATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

226

Amino Acids

25.32

Weight (kDa)

9.07

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150381
rosa_laevigata	RLG00000010921 RLG00000020494
rosa_multiflora	Rmu_sc0000061.1_g000028 Rmu_sc0002179.1_g000010 Rmu_ssc0000480.1_g000007
rosa_roxburghii	Rroxscaffold_7G00163170
rosa_rugosa	Rorug02G0421100 Rorug06G0337100
rosa_samantha	Rh2AG480200 Rh2BG492300 Rh2CG466500 Rh2DG501200 Rh6AG448900
rosa_wichuraiana	Rw2G039190 Rw6G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	587
AccIII	TCCGGA	1 cut(s)	576
AciI	CCGC	2 cut(s)	614, 666
AclWI	GGATC	2 cut(s)	164, 177
AcoI	YGGCCR	1 cut(s)	641
AcsI	RAATTY	4 cut(s)	50, 335, 344, 373
AfiI	CCNNNNNNNGG	5 cut(s)	63, 264, 407, 436, 452
AflII	CTTAAG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	301
AhdI	GACNNNNNGTC	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	362, 477
AluI	AGCT	2 cut(s)	362, 477
Alw26I	GTCTC	2 cut(s)	61, 402
AlwI	GGATC	2 cut(s)	164, 177
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	45
Aor13HI	TCCGGA	1 cut(s)	576
AoxI	GGCC	3 cut(s)	211, 525, 641
ApeKI	GCWGC	2 cut(s)	477, 512
ApoI	RAATTY	4 cut(s)	50, 335, 344, 373
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	280, 435
AvaI	CYCGRG	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	464, 499
BccI	CCATC	2 cut(s)	166, 495
BceAI	ACGGC	1 cut(s)	424
BcgI	CGANNNNNNTGC	4 cut(s)	273, 307, 607, 641
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	61, 402
BfaI	CTAG	2 cut(s)	431, 470
BfrI	CTTAAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	2 cut(s)	478, 513
BlsI	GCNGC	2 cut(s)	479, 514
Bme1390I	CCNGG	2 cut(s)	112, 266
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	171, 581
BmrFI	CCNGG	2 cut(s)	112, 266
BpuMI	CCSGG	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	576
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 431, 461
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 264, 407, 436, 452
Bse118I	RCCGGY	1 cut(s)	523
Bse3DI	GCAATG	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	5 cut(s)	158, 249, 487, 565, 573
BseLI	CCNNNNNNNGG	5 cut(s)	63, 264, 407, 436, 452
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	405, 520
BseXI	GCAGC	2 cut(s)	464, 499
BseYI	CCCAGC	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	213, 527, 643
BsiEI	CGRYCG	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	265, 524, 577
BslI	CCNNNNNNNGG	5 cut(s)	63, 264, 407, 436, 452
BsmAI	GTCTC	2 cut(s)	61, 402
BsmBI	CGTCTC	1 cut(s)	402
BsnI	GGCC	3 cut(s)	213, 527, 643
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	576
Bsp143I	GATC	3 cut(s)	169, 356, 603
BspACI	CCGC	2 cut(s)	614, 666
BspANI	GGCC	3 cut(s)	213, 527, 643
BspCNI	CTCAG	1 cut(s)	23
BspEI	TCCGGA	1 cut(s)	576
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	2 cut(s)	171, 581
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	2 cut(s)	164, 177
BspTI	CTTAAG	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	523
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	3 cut(s)	169, 356, 603
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	4 cut(s)	203, 306, 447, 503
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	525, 668
BstDEI	CTNAG	2 cut(s)	10, 678
BstDSI	CCRYGG	1 cut(s)	446
BstF5I	GGATG	5 cut(s)	158, 249, 487, 565, 573
BstKTI	GATC	3 cut(s)	172, 359, 606
BstMAI	GTCTC	2 cut(s)	61, 402
BstMBI	GATC	3 cut(s)	169, 356, 603
BstMCI	CGRYCG	1 cut(s)	258
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	2 cut(s)	64, 677
BstSCI	CCNGG	2 cut(s)	110, 264
BstV1I	GCAGC	2 cut(s)	464, 499
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	213, 527, 643
BtgI	CCRYGG	1 cut(s)	446
BtsCI	GGATG	5 cut(s)	158, 249, 487, 565, 573
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	18, 105
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	525, 668
CaiI	CAGNNNCTG	1 cut(s)	17
CciI	TCATGA	1 cut(s)	600
Cfr10I	RCCGGY	1 cut(s)	523
CviAII	CATG	4 cut(s)	61, 458, 601, 674
CviJI	RGCY	8 cut(s)	213, 330, 362, 411, 477, 527, 643, 670
CviKI_1	RGCY	8 cut(s)	213, 330, 362, 411, 477, 527, 643, 670
DdeI	CTNAG	2 cut(s)	10, 678
DpnI	GATC	3 cut(s)	171, 358, 605
DpnII	GATC	3 cut(s)	169, 356, 603
DriI	GACNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	641
Eam1105I	GACNNNNNGTC	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	4 cut(s)	64, 461, 604, 677
FatI	CATG	4 cut(s)	60, 457, 600, 673
FauI	CCCGC	1 cut(s)	659
FbaI	TGATCA	1 cut(s)	603
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	2 cut(s)	478, 513
FokI	GGATG	5 cut(s)	145, 236, 474, 560, 572
Fsp4HI	GCNGC	2 cut(s)	478, 513
FspBI	CTAG	2 cut(s)	431, 470
GluI	GCNGC	2 cut(s)	478, 513
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	213, 527, 643
HapII	CCGG	3 cut(s)	265, 524, 577
Hin1II	CATG	4 cut(s)	64, 461, 604, 677
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	7 cut(s)	86, 285, 389, 440, 461, 589, 594
HpaII	CCGG	3 cut(s)	265, 524, 577
HphI	GGTGA	2 cut(s)	280, 435
Hpy166II	GTNNAC	1 cut(s)	588
Hpy188I	TCNGA	6 cut(s)	85, 91, 192, 284, 455, 492
Hpy188III	TCNNGA	5 cut(s)	123, 253, 577, 601, 607
Hpy8I	GTNNAC	1 cut(s)	588
Hpy99I	CGWCG	1 cut(s)	589
HpyCH4III	ACNGT	4 cut(s)	203, 306, 447, 503
HpyCH4V	TGCA	3 cut(s)	105, 480, 515
HpyF3I	CTNAG	2 cut(s)	10, 678
Hsp92II	CATG	4 cut(s)	64, 461, 604, 677
Kpn2I	TCCGGA	1 cut(s)	576
KroI	GCCGGC	1 cut(s)	523
KroNI	GCCGGC	1 cut(s)	525
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	3 cut(s)	169, 356, 603
Lsp1109I	GCAGC	2 cut(s)	464, 499
MaeI	CTAG	2 cut(s)	431, 470
MaeIII	GTNAC	2 cut(s)	197, 441
MalI	GATC	3 cut(s)	171, 358, 605
MboI	GATC	3 cut(s)	169, 356, 603
MboII	GAAGA	3 cut(s)	242, 384, 589
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	5 cut(s)	50, 221, 335, 344, 373
MlyI	GAGTC	2 cut(s)	449, 583
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	8 cut(s)	16, 19, 426, 475, 529, 538, 541, 558
MroI	TCCGGA	1 cut(s)	576
MroNI	GCCGGC	1 cut(s)	523
MseI	TTAA	3 cut(s)	216, 278, 570
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	3 cut(s)	265, 524, 577
MspR9I	CCNGG	2 cut(s)	112, 266
MvaI	CCWGG	1 cut(s)	112
NaeI	GCCGGC	1 cut(s)	525
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	3 cut(s)	169, 356, 603
NgoMIV	GCCGGC	1 cut(s)	523
NlaIII	CATG	4 cut(s)	64, 461, 604, 677
NlaIV	GGNNCC	2 cut(s)	171, 581
NmuCI	GTSAC	1 cut(s)	441
NspI	RCATGY	2 cut(s)	64, 677
PagI	TCATGA	1 cut(s)	600
PaqCI	CACCTGC	1 cut(s)	299
PciI	ACATGT	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	525
PfeI	GAWTC	5 cut(s)	86, 285, 389, 461, 594
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	479, 514
PleI	GAGTC	2 cut(s)	448, 583
PpsI	GAGTC	2 cut(s)	448, 583
PscI	ACATGT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	171, 581
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	169
SalI	GTCGAC	1 cut(s)	586
SaqAI	TTAA	3 cut(s)	216, 278, 570
SatI	GCNGC	2 cut(s)	478, 513
Sau3AI	GATC	3 cut(s)	169, 356, 603
SchI	GAGTC	2 cut(s)	449, 583
ScrFI	CCNGG	2 cut(s)	112, 266
SetI	ASST	9 cut(s)	8, 73, 100, 293, 364, 479, 521, 569, 662
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	50, 221, 335, 344, 373
SsiI	CCGC	2 cut(s)	614, 666
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	431, 470
StyD4I	CCNGG	2 cut(s)	110, 264
TaaI	ACNGT	4 cut(s)	203, 306, 447, 503
TaqI	TCGA	3 cut(s)	365, 587, 592
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	5 cut(s)	50, 221, 335, 344, 373
TfiI	GAWTC	5 cut(s)	86, 285, 389, 461, 594
Tru1I	TTAA	3 cut(s)	216, 278, 570
Tru9I	TTAA	3 cut(s)	216, 278, 570
TscAI	CASTG	2 cut(s)	18, 112
TseFI	GTSAC	1 cut(s)	441
TseI	GCWGC	2 cut(s)	477, 512
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	3 cut(s)	108, 158, 589
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	18, 112
Van91I	CCANNNNNTGG	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	215
XapI	RAATTY	4 cut(s)	50, 335, 344, 373
XceI	RCATGY	2 cut(s)	64, 677
XmiI	GTMKAC	1 cut(s)	587
XspI	CTAG	2 cut(s)	431, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.