RLG00000020494

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
65600118 .. 65605130
5013 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020494

Sequence Viewer

Length: 1332 bp
ATGGGGTCTATAGACGAGAAGATAGACCTTGAAGCTCATGAGGAGCTCACATTTAGCTCATCAACAGCCACCGGTGACATAGAGGCCCTGCATTTTGAGACGGTTCATTTGCACTCCGGAGCTGATGTGGCATACTCATGGATTTCGAAGAATGTTGGGAGGATAAGAACTCCGAGGAGTCTTTATGTTGTCCTTTTGAATGCAAAGATCACCATGTTGCTACCCTTTGGTCCCTTGGCAATTTGGCTACATATCGTTACTGGAAAGCAGGGATGGGTCCTCTTCTTCACCTTATTGGGCATGGCACCATTAACAGAGCTGGATTTTTGGTCCACTGTATATACTGTTGGGAGACTTATAAATGTCACATTTGTAACTGTACCTGAGATCTTTTCATCACTCTTTGCATTAAGGAAAGGAATGATTAGAGTTGTTCAGATATCTTCATTGGGGTCGATTCTATTGAATATACTCTTGGTGATTGGATGGGCCTTCTTCTTTGGTGGGATCATCCGTTGCAAGAAAGTTCAAGTTTTCAACAAGCAACACGCCCTCGTGAACGTTACATTGTTGTCAATGGCTTTAATGGGGATTATGCTTCCAGCTGTGCTTCACTTTTCACATTCAGAGGTGCATTTTGGGAAGTCGGAGTTATCCCTTTCACGATTTAGTAGCTGTGTAATGTTAGTGGCATATGCAAACTTGCAGTTCTTTAAGTTTACGAGTCATCATGATCGTCATAGTCCCATTCATGAGGATGAGGATGAGGAAGGAGTCCAGGATCAAGATTCTTCTCCGGAAATAACTGCTAATGAAGCAATTGGCTGGCTTTCTATCTTAGCTCTGTGGGTGTACTTTTTGTCTTCATACCTTGTGGAGGCTATACAGGGAGCATCCGACTCGCTCAATATTCCTGTAACATTTATCAGTGCCATCCTGCTCCCAGTTGTAGGAAATATGTGGTCTATCCTGTTTTCCATGAGAGAAAAACTTGACCTCACGCTTGGAGTTGCTATTGGATTATCTACACAAACATCTATGTTTACAATCCCCTTCTGTGTAGTTGTTGGGTGGATATTAGGAGAGCCTATGGACTTGAATTTTGAACTCTTTGAGACTGCTATATTGGTTATGGCTGTGCTAGTAGTGGCATTTATGTTGCAGTTACAGCCAGTTTTGTTGTACATGTGGATCCTTCGAATGCTGCTAACTAAACTAACAGTTGGAGTGGCGGCCGTGCATTTGACAATCTATGTAGTATCTGCATGCAAAGTAGAAAATCCATATGATTGCCCAGTACCAAAAAGCTGGGAGGTTTCATCCCTTGTATAA

Protein Analysis

444

Amino Acids

49.31

Weight (kDa)

5.58

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 116 - 239 1.1e-11 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 274 - 421 1.5e-10 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 304
AccIII TCCGGA 2 cut(s) 116, 796
AciI CCGC 1 cut(s) 1232
AclI AACGTT 1 cut(s) 561
AclWI GGATC 4 cut(s) 515, 789, 1186, 1199
AcoI YGGCCR 1 cut(s) 1233
AcsI RAATTY 1 cut(s) 1099
AfaI GTAC 4 cut(s) 381, 854, 1184, 1299
AfiI CCNNNNNNNGG 2 cut(s) 877, 950
AflIII ACRYGT 1 cut(s) 1185
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 7 cut(s) 32, 199, 466, 530, 538, 1099, 1106
AjnI CCWGG 1 cut(s) 777
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 9 cut(s) 35, 46, 57, 122, 319, 605, 675, 842, 1308
AluI AGCT 9 cut(s) 35, 46, 57, 122, 319, 605, 675, 842, 1308
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 92, 346, 1109
AlwI GGATC 4 cut(s) 515, 789, 1186, 1199
Aor13HI TCCGGA 2 cut(s) 116, 796
AoxI GGCC 3 cut(s) 84, 489, 1233
ApeKI GCWGC 1 cut(s) 1204
ApoI RAATTY 1 cut(s) 1099
ArsI GACNNNNNNTTYG 4 cut(s) 91, 123, 1085, 1117
AsiGI ACCGGT 1 cut(s) 71
AspS9I GGNCC 5 cut(s) 85, 230, 277, 330, 489
AsuHPI GGTGA 4 cut(s) 86, 202, 280, 490
AsuII TTCGAA 2 cut(s) 146, 1198
AvaII GGWCC 3 cut(s) 230, 277, 330
BamHI GGATCC 1 cut(s) 1191
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 48
BauI CACGAG 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 1191
BccI CCATC 3 cut(s) 267, 480, 941
BceAI ACGGC 1 cut(s) 1220
BcgI CGANNNNNNTGC 2 cut(s) 882, 916
BciT130I CCWGG 1 cut(s) 779
BcoDI GTCTC 3 cut(s) 92, 346, 1109
BfaI CTAG 1 cut(s) 1142
BfmI CTRYAG 1 cut(s) 9
BglII AGATCT 1 cut(s) 387
BisI GCNGC 2 cut(s) 1205, 1233
BlsI GCNGC 2 cut(s) 1206, 1234
Bme1390I CCNGG 1 cut(s) 779
Bme18I GGWCC 3 cut(s) 230, 277, 330
BmgT120I GGNCC 5 cut(s) 85, 230, 277, 330, 489
BmiI GGNNCC 4 cut(s) 232, 278, 306, 1193
BmrFI CCNGG 1 cut(s) 779
BmrI ACTGGG 2 cut(s) 938, 1289
BmsI GCATC 1 cut(s) 902
BmuI ACTGGG 2 cut(s) 938, 1289
BpiI GAAGAC 1 cut(s) 855
Bpu14I TTCGAA 2 cut(s) 146, 1198
BsaJI CCNNGG 2 cut(s) 173, 234
BsaWI WCCGGW 3 cut(s) 71, 116, 796
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 877, 950
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 4 cut(s) 265, 944, 1172, 1295
BseAI TCCGGA 2 cut(s) 116, 796
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 2 cut(s) 173, 234
BseGI GGATG 8 cut(s) 278, 491, 510, 763, 769, 893, 933, 1319
BseLI CCNNNNNNNGG 2 cut(s) 877, 950
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 4 cut(s) 265, 944, 1172, 1295
BseRI GAGGAG 2 cut(s) 56, 190
BseX3I CGGCCG 1 cut(s) 1233
BseXI GCAGC 1 cut(s) 1191
BseYI CCCAGC 1 cut(s) 1308
Bsh1285I CGRYCG 1 cut(s) 1236
BshFI GGCC 3 cut(s) 86, 491, 1235
BshNI GGYRCC 1 cut(s) 304
BshTI ACCGGT 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 1236
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 3 cut(s) 72, 117, 797
BslFI GGGAC 2 cut(s) 216, 729
BslI CCNNNNNNNGG 2 cut(s) 877, 950
BsmAI GTCTC 3 cut(s) 92, 346, 1109
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 216, 729
BsmI GAATGC 2 cut(s) 205, 1206
BsnI GGCC 3 cut(s) 86, 491, 1235
Bsp119I TTCGAA 2 cut(s) 146, 1198
Bsp1286I GDGCHC 1 cut(s) 48
Bsp13I TCCGGA 2 cut(s) 116, 796
Bsp1407I TGTACA 1 cut(s) 1182
Bsp143I GATC 6 cut(s) 207, 387, 507, 733, 781, 1191
BspACI CCGC 1 cut(s) 1232
BspANI GGCC 3 cut(s) 86, 491, 1235
BspCNI CTCAG 1 cut(s) 376
BspEI TCCGGA 2 cut(s) 116, 796
BspHI TCATGA 3 cut(s) 37, 730, 751
BspLI GGNNCC 4 cut(s) 232, 278, 306, 1193
BspPI GGATC 4 cut(s) 515, 789, 1186, 1199
BspT104I TTCGAA 2 cut(s) 146, 1198
BspT107I GGYRCC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 1182
BsrI ACTGG 4 cut(s) 265, 944, 1172, 1295
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 173, 234
BssMI GATC 6 cut(s) 207, 387, 507, 733, 781, 1191
BssSI CACGAG 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 5 cut(s) 103, 337, 346, 379, 1222
Bst6I CTCTTC 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 1182
BstBI TTCGAA 2 cut(s) 146, 1198
BstC8I GCNNGC 2 cut(s) 827, 1267
BstDEI CTNAG 2 cut(s) 384, 838
BstENI CCTNNNNNAGG 1 cut(s) 875
BstF5I GGATG 8 cut(s) 278, 491, 510, 763, 769, 893, 933, 1319
BstKTI GATC 6 cut(s) 210, 390, 510, 736, 784, 1194
BstMAI GTCTC 3 cut(s) 92, 346, 1109
BstMBI GATC 6 cut(s) 207, 387, 507, 733, 781, 1191
BstMCI CGRYCG 1 cut(s) 1236
BstMWI GCNNNNNNNGC 3 cut(s) 128, 815, 1168
BstNI CCWGG 1 cut(s) 779
BstNSI RCATGY 2 cut(s) 1189, 1269
BstSCI CCNGG 1 cut(s) 777
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 1191
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 2 cut(s) 387, 1191
BstXI CCANNNNNNTGG 1 cut(s) 1308
BstYI RGATCY 2 cut(s) 387, 1191
BstZI CGGCCG 1 cut(s) 1233
BsuRI GGCC 3 cut(s) 86, 491, 1235
BtsCI GGATG 8 cut(s) 278, 491, 510, 763, 769, 893, 933, 1319
BtsIMutI CAGTG 2 cut(s) 333, 934
Cac8I GCNNGC 2 cut(s) 827, 1267
CciI TCATGA 3 cut(s) 37, 730, 751
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 5 cut(s) 85, 230, 277, 330, 489
Csp6I GTAC 4 cut(s) 380, 853, 1183, 1298
CspAI ACCGGT 1 cut(s) 71
CviAII CATG 9 cut(s) 38, 138, 214, 301, 731, 752, 979, 1186, 1266
CviQI GTAC 4 cut(s) 380, 853, 1183, 1298
DdeI CTNAG 2 cut(s) 384, 838
DpnI GATC 6 cut(s) 209, 389, 509, 735, 783, 1193
DpnII GATC 6 cut(s) 207, 387, 507, 733, 781, 1191
EaeI YGGCCR 1 cut(s) 1233
EagI CGGCCG 1 cut(s) 1233
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 1233
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 48
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 3 cut(s) 230, 277, 330
Eco52I CGGCCG 1 cut(s) 1233
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoNI CCTNNNNNAGG 1 cut(s) 875
EcoO109I RGGNCCY 2 cut(s) 85, 277
EcoRII CCWGG 1 cut(s) 777
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 9 cut(s) 41, 141, 217, 304, 734, 755, 982, 1189, 1269
FaqI GGGAC 2 cut(s) 216, 729
FatI CATG 9 cut(s) 37, 137, 213, 300, 730, 751, 978, 1185, 1265
FauNDI CATATG 2 cut(s) 694, 1285
Fnu4HI GCNGC 2 cut(s) 1205, 1233
FokI GGATG 8 cut(s) 285, 497, 498, 770, 776, 880, 920, 1306
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 1205, 1233
FspBI CTAG 1 cut(s) 1142
GluI GCNGC 2 cut(s) 1205, 1233
GsaI CCCAGC 1 cut(s) 1312
HaeIII GGCC 3 cut(s) 86, 491, 1235
HapII CCGG 3 cut(s) 72, 117, 797
Hin1II CATG 9 cut(s) 41, 141, 217, 304, 734, 755, 982, 1189, 1269
HinfI GANTC 6 cut(s) 178, 457, 724, 774, 788, 899
HpaII CCGG 3 cut(s) 72, 117, 797
HphI GGTGA 4 cut(s) 86, 202, 280, 490
Hpy166II GTNNAC 5 cut(s) 333, 559, 720, 853, 1044
Hpy188I TCNGA 5 cut(s) 174, 438, 628, 649, 898
Hpy188III TCNNGA 8 cut(s) 38, 117, 556, 663, 731, 752, 785, 797
Hpy8I GTNNAC 5 cut(s) 333, 559, 720, 853, 1044
HpyAV CCTTC 4 cut(s) 502, 764, 1063, 1205
HpyCH4III ACNGT 5 cut(s) 103, 337, 346, 379, 1222
HpyCH4IV ACGT 1 cut(s) 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 815, 1168
HpyF3I CTNAG 2 cut(s) 384, 838
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 9 cut(s) 41, 141, 217, 304, 734, 755, 982, 1189, 1269
Kpn2I TCCGGA 2 cut(s) 116, 796
Kzo9I GATC 6 cut(s) 207, 387, 507, 733, 781, 1191
LmnI GCTCC 4 cut(s) 43, 119, 890, 945
Lsp1109I GCAGC 1 cut(s) 1191
LweI GCATC 1 cut(s) 902
MaeI CTAG 1 cut(s) 1142
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 7 cut(s) 74, 256, 364, 373, 562, 916, 1164
MalI GATC 6 cut(s) 209, 389, 509, 735, 783, 1193
MboI GATC 6 cut(s) 207, 387, 507, 733, 781, 1191
MboII GAAGA 8 cut(s) 31, 160, 274, 277, 435, 487, 783, 855
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 2 cut(s) 387, 1191
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 3 cut(s) 240, 819, 1099
MlyI GAGTC 4 cut(s) 187, 733, 783, 893
MmeI TCCRAC 3 cut(s) 627, 921, 1204
MroI TCCGGA 2 cut(s) 116, 796
MseI TTAA 4 cut(s) 311, 410, 584, 714
MslI CAYNNNNRTG 2 cut(s) 136, 756
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 3 cut(s) 72, 117, 797
MspR9I CCNGG 1 cut(s) 779
MunI CAATTG 1 cut(s) 819
Mva1269I GAATGC 2 cut(s) 205, 1206
MvaI CCWGG 1 cut(s) 779
MwoI GCNNNNNNNGC 3 cut(s) 128, 815, 1168
NdeI CATATG 2 cut(s) 694, 1285
NdeII GATC 6 cut(s) 207, 387, 507, 733, 781, 1191
NlaIII CATG 9 cut(s) 41, 141, 217, 304, 734, 755, 982, 1189, 1269
NlaIV GGNNCC 4 cut(s) 232, 278, 306, 1193
NmuCI GTSAC 2 cut(s) 74, 364
NspI RCATGY 2 cut(s) 1189, 1269
NspV TTCGAA 2 cut(s) 146, 1198
PaeI GCATGC 1 cut(s) 1269
PagI TCATGA 3 cut(s) 37, 730, 751
PciI ACATGT 1 cut(s) 1185
PctI GAATGC 2 cut(s) 205, 1206
PfeI GAWTC 2 cut(s) 457, 788
PfoI TCCNGGA 1 cut(s) 777
PinAI ACCGGT 1 cut(s) 71
PkrI GCNGC 2 cut(s) 1206, 1234
PleI GAGTC 4 cut(s) 186, 732, 782, 893
PpsI GAGTC 4 cut(s) 186, 732, 782, 893
PpuMI RGGWCCY 1 cut(s) 277
PscI ACATGT 1 cut(s) 1185
PsiI TTATAA 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 48
Psp1406I AACGTT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 777
PspFI CCCAGC 1 cut(s) 1308
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 4 cut(s) 232, 278, 306, 1193
PspPI GGNCC 5 cut(s) 85, 230, 277, 330, 489
PspPPI RGGWCCY 1 cut(s) 277
PsuI RGATCY 2 cut(s) 387, 1191
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 4 cut(s) 381, 854, 1184, 1299
RsaNI GTAC 4 cut(s) 380, 853, 1183, 1298
RseI CAYNNNNRTG 2 cut(s) 136, 756
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 4 cut(s) 311, 410, 584, 714
SatI GCNGC 2 cut(s) 1205, 1233
Sau3AI GATC 6 cut(s) 207, 387, 507, 733, 781, 1191
Sau96I GGNCC 5 cut(s) 85, 230, 277, 330, 489
SchI GAGTC 4 cut(s) 187, 733, 783, 893
ScrFI CCNGG 1 cut(s) 779
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 1 cut(s) 902
SfcI CTRYAG 1 cut(s) 9
SfuI TTCGAA 2 cut(s) 146, 1198
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 3 cut(s) 230, 277, 330
SmiMI CAYNNNNRTG 2 cut(s) 136, 756
SphI GCATGC 1 cut(s) 1269
Sse9I AATT 3 cut(s) 240, 819, 1099
SsiI CCGC 1 cut(s) 1232
SspI AATATT 1 cut(s) 910
SspMI CTAG 1 cut(s) 1142
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 777
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 5 cut(s) 103, 337, 346, 379, 1222
TaiI ACGT 1 cut(s) 564
TaqI TCGA 3 cut(s) 146, 455, 1198
TasI AATT 3 cut(s) 240, 819, 1099
TatI WGTACW 2 cut(s) 852, 1182
TauI GCSGC 1 cut(s) 1235
TfiI GAWTC 2 cut(s) 457, 788
Tru1I TTAA 4 cut(s) 311, 410, 584, 714
Tru9I TTAA 4 cut(s) 311, 410, 584, 714
TscAI CASTG 2 cut(s) 340, 934
TseFI GTSAC 2 cut(s) 74, 364
TseI GCWGC 1 cut(s) 1204
Tsp45I GTSAC 2 cut(s) 74, 364
TspDTI ATGAA 7 cut(s) 95, 384, 435, 740, 828, 855, 1308
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 2 cut(s) 340, 934
VpaK11BI GGWCC 3 cut(s) 230, 277, 330
XagI CCTNNNNNAGG 1 cut(s) 875
XapI RAATTY 1 cut(s) 1099
XceI RCATGY 2 cut(s) 1189, 1269
XspI CTAG 1 cut(s) 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.