Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008240

Physical Location & Seq

Genomic Coordinates Reverse (-)

69472980 .. 69478331

Gene Structure 5352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTTTATGAATGTGGGTTTATAGTTTATGGTTTGATTTTGTTCTATAGGTTAAGACCAGAGTTTTACTACACCTGGTATGAGACTCTTGCTTATTATTCCACAGATTCTTCACGCTGGGAAAGACCTAAACTGTGCCCGCTGAGGAGAAAGAGTTTTGGAGGCAGCACTCTCTCAGTAGTCACAGCCGCGGCGTCTCTTCCCAAATCTCAAATGGCTCCTTTCAGGTATCATCAGTACCAGGTGGTGGGGAGAGCTCTCCCAACTGAGAAGGATGAGCATCCCAAGATCTTCCGCATGAAGCTCTGGCACACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTACTTCTTGAGGAAGTTGAAGAAAGTGAAGAAGAGCAATGGACAAATCTTGGCCATCAATGAGATTTTTGAGAAAAATCCAACTACAATCAACAACTATGGTATTTGGCTGCGATACCAGAGTAGGACTGGTTATCACAACATGTACAAGGAGTACAGAAATACAACTCTGAATGGTGCTGTAGAAGACATGTACACTGAGATGGCATCTCGTCACAGGGTGAGGTCTCCGTGCATCCAGATCATCAAGACAGCAACTATCCCAGCAAAACTCTGCAAGAGGGAGAGCACCAAGCAGTTCCATAACTCCAAGATCAAGTTCCCATTGGTGCTCAGGAAGATTAGGCCCCCATCTAGGAAGCTGAAGACAACTTACAAGGCATCCAGGCCCAACATCTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

249

Amino Acids

29.66

Weight (kDa)

10.18

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	78 - 199	1.7e-22	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008240)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29965 AT1G29970 AT2G34480 AT2G34480 AT3G14600
fragaria_vesca	FvH4_6g38600 FvH4_6g38600
malus_domestica	MD05G1285400.v1.1 MD10G1263500.v1.1
prunus_persica	Prupe.3G177000_v2.0.a1 Prupe.4G079200_v2.0.a1
pyrus_communis	pycom05g26450 pycom10g21970
rosa_chinensis	RchiOBHm_Chr2g0152021
rosa_laevigata	RLG00000020601
rosa_multiflora	Rmu_sc0041018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00096040
rosa_rugosa	Rorug02G0430400
rosa_samantha	Rh2AG491100 Rh2BG503400 Rh2CG477500 Rh2DG514700
rosa_wichuraiana	Rw2G040370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	247, 342
AccII	CGCG	1 cut(s)	191
AciI	CCGC	4 cut(s)	140, 189, 191, 295
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	728
AcyI	GRCGYC	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	565
AfaI	GTAC	5 cut(s)	239, 347, 491, 500, 539
AfiI	CCNNNNNNNGG	3 cut(s)	247, 342, 699
AflIII	ACRYGT	2 cut(s)	486, 534
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	3 cut(s)	74, 240, 728
AjuI	GAANNNNNNNTTGG	4 cut(s)	323, 355, 647, 679
AluBI	AGCT	3 cut(s)	257, 304, 706
AluI	AGCT	3 cut(s)	257, 304, 706
Alw21I	GWGCWC	3 cut(s)	259, 635, 678
Alw26I	GTCTC	3 cut(s)	77, 201, 576
AoxI	GGCC	3 cut(s)	396, 689, 731
ApeKI	GCWGC	2 cut(s)	165, 454
AspS9I	GGNCC	3 cut(s)	322, 690, 732
AsuHPI	GGTGA	1 cut(s)	577
AvaII	GGWCC	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	140
BaeI	ACNNNNGTAYC	2 cut(s)	451, 484
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	259
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
BbsI	GAAGAC	2 cut(s)	537, 716
Bbv12I	GWGCWC	3 cut(s)	259, 635, 678
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	177, 441
BccI	CCATC	3 cut(s)	407, 541, 703
BciT130I	CCWGG	3 cut(s)	76, 242, 730
BcoDI	GTCTC	3 cut(s)	77, 201, 576
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	2 cut(s)	46, 525
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	4 cut(s)	166, 189, 192, 455
BlsI	GCNGC	4 cut(s)	167, 190, 193, 456
Bme1390I	CCNGG	3 cut(s)	76, 242, 730
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	322, 690, 732
BmiI	GGNNCC	2 cut(s)	219, 692
BmrFI	CCNGG	3 cut(s)	76, 242, 730
BmsI	GCATC	4 cut(s)	289, 560, 588, 734
BpiI	GAAGAC	2 cut(s)	537, 716
Bpu10I	CCTNAGC	2 cut(s)	143, 677
BpuEI	CTTGAG	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 342, 699
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	3 cut(s)	76, 242, 730
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	4 cut(s)	280, 280, 579, 725
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	247, 342, 699
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	5 cut(s)	134, 189, 258, 534, 691
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	177, 441
BseYI	CCCAGC	2 cut(s)	117, 607
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	398, 691, 733
BsiHKAI	GWGCWC	3 cut(s)	259, 635, 678
BslI	CCNNNNNNNGG	3 cut(s)	247, 342, 699
BsmAI	GTCTC	3 cut(s)	77, 201, 576
BsmBI	CGTCTC	1 cut(s)	201
BsnI	GGCC	3 cut(s)	398, 691, 733
Bso31I	GGTCTC	1 cut(s)	576
Bsp1286I	GDGCHC	4 cut(s)	140, 259, 635, 678
Bsp1407I	TGTACA	2 cut(s)	489, 537
Bsp143I	GATC	3 cut(s)	288, 585, 657
BspACI	CCGC	4 cut(s)	140, 189, 191, 295
BspANI	GGCC	3 cut(s)	398, 691, 733
BspCNI	CTCAG	5 cut(s)	135, 188, 259, 535, 690
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	219, 692
BspQI	GCTCTTC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	388
BsrGI	TGTACA	2 cut(s)	489, 537
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	288, 585, 657
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	3 cut(s)	76, 242, 730
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	2 cut(s)	204, 371
BstACI	GRCGYC	1 cut(s)	194
BstAUI	TGTACA	2 cut(s)	489, 537
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	5 cut(s)	143, 175, 267, 543, 677
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	4 cut(s)	280, 280, 579, 725
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	3 cut(s)	291, 588, 660
BstMAI	GTCTC	3 cut(s)	77, 201, 576
BstMBI	GATC	3 cut(s)	288, 585, 657
BstNI	CCWGG	3 cut(s)	76, 242, 730
BstNSI	RCATGY	2 cut(s)	490, 538
BstSCI	CCNGG	3 cut(s)	74, 240, 728
BstSFI	CTRYAG	2 cut(s)	46, 525
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	177, 441
BstV2I	GAAGAC	2 cut(s)	537, 716
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	398, 691, 733
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	4 cut(s)	280, 280, 579, 725
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	322, 690, 732
Cfr42I	CCGCGG	1 cut(s)	192
CseI	GACGC	1 cut(s)	183
CsiI	ACCWGGT	2 cut(s)	74, 240
Csp6I	GTAC	5 cut(s)	238, 346, 490, 499, 538
CviAII	CATG	3 cut(s)	298, 487, 535
CviJI	RGCY	9 cut(s)	188, 218, 257, 304, 398, 454, 691, 706, 733
CviKI_1	RGCY	9 cut(s)	188, 218, 257, 304, 398, 454, 691, 706, 733
CviQI	GTAC	5 cut(s)	238, 346, 490, 499, 538
DdeI	CTNAG	5 cut(s)	143, 175, 267, 543, 677
DpnI	GATC	3 cut(s)	290, 587, 659
DpnII	GATC	3 cut(s)	288, 585, 657
DraIII	CACNNNGTG	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	204, 371
EarI	CTCTTC	2 cut(s)	204, 371
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	728
EcoICRI	GAGCTC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	690
EcoRII	CCWGG	3 cut(s)	74, 240, 728
EcoT38I	GRGCYC	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	3 cut(s)	301, 490, 538
FatI	CATG	3 cut(s)	297, 486, 534
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	166, 189, 192, 455
FokI	GGATG	4 cut(s)	267, 287, 566, 712
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	4 cut(s)	166, 189, 192, 455
FspBI	CTAG	1 cut(s)	699
GluI	GCNGC	4 cut(s)	166, 189, 192, 455
GsaI	CCCAGC	2 cut(s)	121, 611
HaeIII	GGCC	3 cut(s)	398, 691, 733
HgaI	GACGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	301, 490, 538
HinfI	GANTC	2 cut(s)	85, 107
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	4 cut(s)	352, 583, 592, 679
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	579, 621
HpyF3I	CTNAG	5 cut(s)	143, 175, 267, 543, 677
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	301, 490, 538
KspI	CCGCGG	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	288, 585, 657
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	2 cut(s)	177, 441
LweI	GCATC	4 cut(s)	289, 560, 588, 734
MabI	ACCWGGT	2 cut(s)	74, 240
MaeI	CTAG	1 cut(s)	699
MaeIII	GTNAC	2 cut(s)	181, 557
MalI	GATC	3 cut(s)	290, 587, 659
MboI	GATC	3 cut(s)	288, 585, 657
MboII	GAAGA	9 cut(s)	102, 191, 283, 376, 385, 388, 542, 694, 721
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	4 cut(s)	140, 259, 635, 678
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	6 cut(s)	138, 155, 313, 348, 561, 618
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	3 cut(s)	315, 545, 743
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	142, 191
MspR9I	CCNGG	3 cut(s)	76, 242, 730
MvaI	CCWGG	3 cut(s)	76, 242, 730
MvnI	CGCG	1 cut(s)	191
NdeII	GATC	3 cut(s)	288, 585, 657
NlaIII	CATG	3 cut(s)	301, 490, 538
NlaIV	GGNNCC	2 cut(s)	219, 692
NmuCI	GTSAC	2 cut(s)	181, 557
NspI	RCATGY	2 cut(s)	490, 538
PciI	ACATGT	2 cut(s)	486, 534
PciSI	GCTCTTC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	107
PflMI	CCANNNNNTGG	2 cut(s)	247, 342
PkrI	GCNGC	4 cut(s)	167, 190, 193, 456
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	2 cut(s)	486, 534
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	3 cut(s)	74, 240, 728
PspFI	CCCAGC	2 cut(s)	117, 607
PspGI	CCWGG	3 cut(s)	74, 240, 728
PspN4I	GGNNCC	2 cut(s)	219, 692
PspPI	GGNCC	3 cut(s)	322, 690, 732
PsuI	RGATCY	1 cut(s)	288
RsaI	GTAC	5 cut(s)	239, 347, 491, 500, 539
RsaNI	GTAC	5 cut(s)	238, 346, 490, 499, 538
RseI	CAYNNNNRTG	3 cut(s)	315, 545, 743
SacI	GAGCTC	1 cut(s)	259
SacII	CCGCGG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	4 cut(s)	166, 189, 192, 455
Sau3AI	GATC	3 cut(s)	288, 585, 657
Sau96I	GGNCC	3 cut(s)	322, 690, 732
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	76, 242, 730
SduI	GDGCHC	4 cut(s)	140, 259, 635, 678
SexAI	ACCWGGT	2 cut(s)	74, 240
SfaNI	GCATC	4 cut(s)	289, 560, 588, 734
SfcI	CTRYAG	2 cut(s)	46, 525
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	3 cut(s)	315, 545, 743
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
SsiI	CCGC	4 cut(s)	140, 189, 191, 295
SspMI	CTAG	1 cut(s)	699
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	3 cut(s)	74, 240, 728
TaaI	ACNGT	1 cut(s)	135
TatI	WGTACW	3 cut(s)	489, 498, 537
TauI	GCSGC	2 cut(s)	191, 194
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	181, 557
TseI	GCWGC	2 cut(s)	165, 454
Tsp45I	GTSAC	2 cut(s)	181, 557
TspDTI	ATGAA	2 cut(s)	24, 314
TspGWI	ACGGA	2 cut(s)	314, 564
TspRI	CASTG	1 cut(s)	547
Van91I	CCANNNNNTGG	2 cut(s)	247, 342
VpaK11BI	GGWCC	1 cut(s)	322
XceI	RCATGY	2 cut(s)	490, 538
XcmI	CCANNNNNNNNNTGG	2 cut(s)	211, 470
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.