Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011231

Physical Location & Seq

Genomic Coordinates Forward (+)

72817197 .. 72818618

Gene Structure 1422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGAGATGAAGGACTTGGTTGGAATAAATATTGATTCGCTTGTGGTTCTTTTAAGTTCATTCACTGAATTTTGTGTTTTAGAGGAAGGGAAAAGAAAGGGAAGAGAAGTTCACGCATATGTAATTGCAACTGGCTTGATTAACAGCAAGGTTGCAATAGAGAATGGGCTTGTAAATATGAATGCTAAATGTGGTGCTATTGATGATGCTTGTTCAGTTTTCAGGCTCATGGTAGACAGAGACTTAATCTCATGGAACTCTCTGATCTCTGGTCTCGACCAGAATGAGTGTTTTGAAGATGCAATCATGAAGTTCTCTGAAATGAGAAAATCTGAGTTGACACCTTCAATTTTCACATTAATTAGTGCTTTGAGTTCATGTGCAAGCTTGGAGTGGATCATGATGGGACTGCAAATACATTGTGAAGCACTTAAATTGGGACTTGATTTGGATGTTTCAGTTTCAAATGCTCTTCTTGCACTGTATTCCGACACAGGGTGCCTTAGTGAATCCCGGAATGTTTTTTTCTTGATGCAGGAGTATGACCAAGTGTCGTGGAATTCCATAGTTGGGGCTTTAGCTAGTTCAGAGGCTTCAGTTTTTGAAGCTGTAGAATATTTATTGGAAATGATGCGATCTGGATGGGAACTTAATAGAGTAACATTTATTAGCATTCTTTCAGCAGTTTCATCTTTTTCACTTCATGAGCTAGGCCAGCAGATTCATGTTGTAGTCTTAAAATACAATGCAGCAAAGGACTGTGCTATTGAGAATGCGCTTATTGCTTGCTATGGAAAGTGTGGACAGATAGAGGACTGCGAGAAGATATTTTCTAGAATGCCTGAAAGAAGGGATGAAGTAAGTTGGAATTCCATGATTTCTGGGTACATACATAATGAGCTCTTGCCCAAGGCCATGTATTTGGTCTGGTTTATGATTGAGAGGGGTCAGAAATTAGACTCTTTTACTTTTGCTACTGTTCTGAGTGCTTGTGCTTCAGTTGCAACATTAGAGCGTGGGATGGAAGTTCGTGCTTGTGCGGTAAGAGCTTATTTGGAATCTGATGTTGTAGTTGGGAGTGCACTTGTCGACATGTATTCAAAGTGTGGAAGGATTGATTATGCTTCAAGATTCTTCGAGTTGACGCTGGTAAGGAATGCGTATTCCTGGAATTCATTAATATCAGGATATGCTCGCAATGGAGATGGACAAAAAACTCTGAGGCTTTTCACACAAATGAAGCAACAAGATCAGCCACCAGATCACGTTACCTTTGTTCGGTTCCTATCTGCTTGTAGCCTTGCAGGGCTCGTGGATGAAGGGTTTCAGCATTTCAATTCCATGAGTAAAGTACATGGACTGGCTCCTAGGATGGAGCACTTTTCATGTATTGTTGATCTTCTCGGAAGGGCAGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

473

Amino Acids

52.75

Weight (kDa)

5.1

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	81 - 128	2.8e-06	PPR repeat family
PPR_2	PF13041	285 - 332	3.3e-08	PPR repeat family
PPR_2	PF13041	386 - 432	2.7e-10	PPR repeat family
PPR	PF01535	388 - 415	1.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09950 AT5G09950 AT5G09950
fragaria_vesca	FvH4_6g40670
malus_domestica	MD09G1126300.v1.1
prunus_persica	Prupe.3G198300_v2.0.a1
pyrus_communis	pycom09g05060
rosa_chinensis	RchiOBHm_Chr2g0156061 RchiOBHm_Chr2g0156111
rosa_laevigata	RLG00000020884 RLG00000020888
rosa_multiflora	Rmu_sc0000260.1_g000021 Rmu_sc0011922.1_g000009
rosa_roxburghii	Rroxscaffold_2G00093230
rosa_rugosa	Rorug02G0451500
rosa_samantha	Rh2AG518400 Rh2BG529500 Rh2CG503100 Rh2DG538700
rosa_wichuraiana	Rw2G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	498
AccI	GTMKAC	2 cut(s)	234, 1089
AciI	CCGC	1 cut(s)	1040
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	4 cut(s)	68, 559, 868, 1171
AcuI	CTGAAG	2 cut(s)	579, 981
AdeI	CACNNNGTG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	887, 1353
AfiI	CCNNNNNNNGG	3 cut(s)	495, 570, 1278
AflIII	ACRYGT	1 cut(s)	1092
AgsI	TTSAA	7 cut(s)	296, 348, 465, 605, 1101, 1128, 1336
AhdI	GACNNNNNGTC	1 cut(s)	550
AjnI	CCWGG	1 cut(s)	1166
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	6 cut(s)	387, 581, 608, 709, 901, 1049
AluI	AGCT	6 cut(s)	387, 581, 608, 709, 901, 1049
Alw21I	GWGCWC	3 cut(s)	903, 1084, 1380
Alw26I	GTCTC	2 cut(s)	234, 278
Alw44I	GTGCAC	1 cut(s)	1080
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	2 cut(s)	712, 912
ApaLI	GTGCAC	1 cut(s)	1080
ApeKI	GCWGC	1 cut(s)	749
ApoI	RAATTY	4 cut(s)	68, 559, 868, 1171
AseI	ATTAAT	2 cut(s)	359, 1178
Asp700I	GAANNNNTTC	1 cut(s)	1323
AspA2I	CCTAGG	1 cut(s)	1367
AspLEI	GCGC	1 cut(s)	778
AsuC2I	CCSGG	1 cut(s)	514
AvrII	CCTAGG	1 cut(s)	1367
BaeGI	GKGCMC	1 cut(s)	1084
BanI	GGYRCC	1 cut(s)	498
BanII	GRGCYC	2 cut(s)	903, 1311
BauI	CACGAG	1 cut(s)	1310
Bbv12I	GWGCWC	3 cut(s)	903, 1084, 1380
BbvI	GCAGC	1 cut(s)	761
BccI	CCATC	5 cut(s)	397, 636, 1015, 1199, 1366
BciT130I	CCWGG	1 cut(s)	1168
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	234, 278
BfaI	CTAG	4 cut(s)	582, 710, 834, 1368
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	1 cut(s)	750
BlnI	CCTAGG	1 cut(s)	1367
BlsI	GCNGC	1 cut(s)	751
Bme1390I	CCNGG	2 cut(s)	514, 1168
BmeRI	GACNNNNNGTC	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	500, 1283, 1365
BmrFI	CCNGG	2 cut(s)	514, 1168
BmsI	GCATC	4 cut(s)	196, 289, 522, 621
BpuMI	CCSGG	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	909, 1367
Bsc4I	CCNNNNNNNGG	3 cut(s)	495, 570, 1278
Bse1I	ACTGG	2 cut(s)	136, 1365
Bse3DI	GCAATG	1 cut(s)	1204
BseBI	CCWGG	1 cut(s)	1168
BseDI	CCNNGG	2 cut(s)	909, 1367
BseGI	GGATG	6 cut(s)	457, 647, 859, 1026, 1321, 1377
BseLI	CCNNNNNNNGG	3 cut(s)	495, 570, 1278
BseMI	GCAATG	1 cut(s)	1204
BseMII	CTCAG	3 cut(s)	324, 974, 1211
BseNI	ACTGG	2 cut(s)	136, 1365
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	1 cut(s)	761
BshFI	GGCC	2 cut(s)	714, 914
BshNI	GGYRCC	1 cut(s)	498
BsiHKAI	GWGCWC	3 cut(s)	903, 1084, 1380
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	420, 453
BslI	CCNNNNNNNGG	3 cut(s)	495, 570, 1278
BsmAI	GTCTC	2 cut(s)	234, 278
BsmFI	GGGAC	2 cut(s)	420, 453
BsmI	GAATGC	5 cut(s)	187, 672, 778, 843, 1162
BsnI	GGCC	2 cut(s)	714, 914
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	4 cut(s)	903, 1084, 1311, 1380
Bsp143I	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
BspACI	CCGC	1 cut(s)	1040
BspANI	GGCC	2 cut(s)	714, 914
BspCNI	CTCAG	3 cut(s)	325, 975, 1212
BspHI	TCATGA	3 cut(s)	306, 399, 703
BspLI	GGNNCC	3 cut(s)	500, 1283, 1365
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	1204
BsrI	ACTGG	2 cut(s)	136, 1365
BssECI	CCNNGG	2 cut(s)	909, 1367
BssMI	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
BssSI	CACGAG	1 cut(s)	1310
BssT1I	CCWWGG	2 cut(s)	909, 1367
Bst2BI	CACGAG	1 cut(s)	1310
Bst2UI	CCWGG	1 cut(s)	1168
Bst4CI	ACNGT	3 cut(s)	483, 761, 979
Bst6I	CTCTTC	2 cut(s)	97, 477
BstC8I	GCNNGC	4 cut(s)	385, 716, 787, 1195
BstDEI	CTNAG	4 cut(s)	333, 503, 983, 1220
BstF5I	GGATG	6 cut(s)	457, 647, 859, 1026, 1321, 1377
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	6 cut(s)	267, 399, 638, 1252, 1264, 1399
BstMAI	GTCTC	2 cut(s)	234, 278
BstMBI	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
BstMWI	GCNNNNNNNGC	5 cut(s)	476, 715, 782, 1001, 1046
BstNI	CCWGG	1 cut(s)	1168
BstNSI	RCATGY	1 cut(s)	1096
BstSCI	CCNGG	2 cut(s)	512, 1166
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	1084
BstV1I	GCAGC	1 cut(s)	761
BstXI	CCANNNNNNTGG	1 cut(s)	922
BsuRI	GGCC	2 cut(s)	714, 914
BtsCI	GGATG	6 cut(s)	457, 647, 859, 1026, 1321, 1377
BtsIMutI	CAGTG	2 cut(s)	63, 479
Cac8I	GCNNGC	4 cut(s)	385, 716, 787, 1195
CciI	TCATGA	3 cut(s)	306, 399, 703
CfoI	GCGC	1 cut(s)	778
CseI	GACGC	1 cut(s)	1153
Csp6I	GTAC	2 cut(s)	886, 1352
CspCI	CAANNNNNGTGG	2 cut(s)	536, 571
CviQI	GTAC	2 cut(s)	886, 1352
DdeI	CTNAG	4 cut(s)	333, 503, 983, 1220
DpnI	GATC	6 cut(s)	266, 398, 637, 1251, 1263, 1398
DpnII	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
DraIII	CACNNNGTG	1 cut(s)	498
DriI	GACNNNNNGTC	1 cut(s)	550
Eam1104I	CTCTTC	2 cut(s)	97, 477
Eam1105I	GACNNNNNGTC	1 cut(s)	550
EarI	CTCTTC	2 cut(s)	97, 477
Ecl136II	GAGCTC	1 cut(s)	901
Eco130I	CCWWGG	2 cut(s)	909, 1367
Eco24I	GRGCYC	2 cut(s)	903, 1311
Eco31I	GGTCTC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	901
Eco57I	CTGAAG	2 cut(s)	579, 981
EcoICRI	GAGCTC	1 cut(s)	901
EcoRI	GAATTC	3 cut(s)	559, 868, 1171
EcoRII	CCWGG	1 cut(s)	1166
EcoT14I	CCWWGG	2 cut(s)	909, 1367
EcoT38I	GRGCYC	2 cut(s)	903, 1311
ErhI	CCWWGG	2 cut(s)	909, 1367
FaqI	GGGAC	2 cut(s)	420, 453
FauNDI	CATATG	1 cut(s)	118
FblI	GTMKAC	2 cut(s)	234, 1089
Fnu4HI	GCNGC	1 cut(s)	750
FokI	GGATG	6 cut(s)	464, 654, 866, 1033, 1328, 1384
FriOI	GRGCYC	2 cut(s)	903, 1311
Fsp4HI	GCNGC	1 cut(s)	750
FspBI	CTAG	4 cut(s)	582, 710, 834, 1368
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	714, 914
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	1153
HhaI	GCGC	1 cut(s)	778
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	3 cut(s)	339, 1090, 1143
HindII	GTYRAC	3 cut(s)	339, 1090, 1143
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	6 cut(s)	35, 509, 721, 959, 1058, 1131
HpaII	CCGG	1 cut(s)	514
Hpy166II	GTNNAC	7 cut(s)	112, 235, 339, 803, 1082, 1090, 1143
Hpy188III	TCNNGA	9 cut(s)	275, 307, 400, 529, 639, 704, 834, 1128, 1185
Hpy8I	GTNNAC	7 cut(s)	112, 235, 339, 803, 1082, 1090, 1143
HpyAV	CCTTC	7 cut(s)	4, 80, 354, 843, 1104, 1313, 1401
HpyCH4III	ACNGT	3 cut(s)	483, 761, 979
HpyCH4IV	ACGT	1 cut(s)	1266
HpyF10VI	GCNNNNNNNGC	5 cut(s)	476, 715, 782, 1001, 1046
HpyF3I	CTNAG	4 cut(s)	333, 503, 983, 1220
HpySE526I	ACGT	1 cut(s)	1266
HspAI	GCGC	1 cut(s)	776
Kzo9I	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	2 cut(s)	1369, 1375
Lsp1109I	GCAGC	1 cut(s)	761
LweI	GCATC	4 cut(s)	196, 289, 522, 621
MaeI	CTAG	4 cut(s)	582, 710, 834, 1368
MaeII	ACGT	1 cut(s)	1266
MaeIII	GTNAC	2 cut(s)	658, 1267
MalI	GATC	6 cut(s)	266, 398, 637, 1251, 1263, 1398
MboI	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
MboII	GAAGA	6 cut(s)	114, 308, 464, 835, 1126, 1391
MhlI	GDGCHC	4 cut(s)	903, 1084, 1311, 1380
MlyI	GAGTC	1 cut(s)	953
MmeI	TCCRAC	2 cut(s)	513, 845
MnlI	CCTC	5 cut(s)	76, 583, 805, 936, 1215
MroXI	GAANNNNTTC	1 cut(s)	1323
MseI	TTAA	8 cut(s)	53, 141, 245, 359, 432, 651, 737, 1178
MslI	CAYNNNNRTG	2 cut(s)	117, 1235
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	514, 1168
Mva1269I	GAATGC	5 cut(s)	187, 672, 778, 843, 1162
MvaI	CCWGG	1 cut(s)	1168
MwoI	GCNNNNNNNGC	5 cut(s)	476, 715, 782, 1001, 1046
NciI	CCSGG	1 cut(s)	514
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
NlaIV	GGNNCC	3 cut(s)	500, 1283, 1365
NspI	RCATGY	1 cut(s)	1096
PagI	TCATGA	3 cut(s)	306, 399, 703
PciI	ACATGT	1 cut(s)	1092
PciSI	GCTCTTC	1 cut(s)	477
PctI	GAATGC	5 cut(s)	187, 672, 778, 843, 1162
PdmI	GAANNNNTTC	1 cut(s)	1323
PfeI	GAWTC	5 cut(s)	35, 509, 721, 1058, 1131
PfoI	TCCNGGA	2 cut(s)	512, 1166
PkrI	GCNGC	1 cut(s)	751
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
PscI	ACATGT	1 cut(s)	1092
PshBI	ATTAAT	2 cut(s)	359, 1178
Psp124BI	GAGCTC	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	1166
PspGI	CCWGG	1 cut(s)	1166
PspN4I	GGNNCC	3 cut(s)	500, 1283, 1365
RsaI	GTAC	2 cut(s)	887, 1353
RsaNI	GTAC	2 cut(s)	886, 1352
RseI	CAYNNNNRTG	2 cut(s)	117, 1235
SacI	GAGCTC	1 cut(s)	903
SalI	GTCGAC	1 cut(s)	1088
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	8 cut(s)	53, 141, 245, 359, 432, 651, 737, 1178
SatI	GCNGC	1 cut(s)	750
Sau3AI	GATC	6 cut(s)	264, 396, 635, 1249, 1261, 1396
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	2 cut(s)	514, 1168
SduI	GDGCHC	4 cut(s)	903, 1084, 1311, 1380
SfaNI	GCATC	4 cut(s)	196, 289, 522, 621
SfcI	CTRYAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	2 cut(s)	117, 1235
SsiI	CCGC	1 cut(s)	1040
SspI	AATATT	2 cut(s)	31, 617
SspMI	CTAG	4 cut(s)	582, 710, 834, 1368
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	2 cut(s)	512, 1166
StyI	CCWWGG	2 cut(s)	909, 1367
TaaI	ACNGT	3 cut(s)	483, 761, 979
TaiI	ACGT	1 cut(s)	1269
TaqI	TCGA	3 cut(s)	276, 1089, 1137
TatI	WGTACW	1 cut(s)	1351
TfiI	GAWTC	5 cut(s)	35, 509, 721, 1058, 1131
Tru1I	TTAA	8 cut(s)	53, 141, 245, 359, 432, 651, 737, 1178
Tru9I	TTAA	8 cut(s)	53, 141, 245, 359, 432, 651, 737, 1178
TscAI	CASTG	2 cut(s)	70, 486
TseI	GCWGC	1 cut(s)	749
TspRI	CASTG	2 cut(s)	70, 486
VneI	GTGCAC	1 cut(s)	1080
VspI	ATTAAT	2 cut(s)	359, 1178
XapI	RAATTY	4 cut(s)	68, 559, 868, 1171
XbaI	TCTAGA	1 cut(s)	833
XceI	RCATGY	1 cut(s)	1096
XmaJI	CCTAGG	1 cut(s)	1367
XmiI	GTMKAC	2 cut(s)	234, 1089
XmnI	GAANNNNTTC	1 cut(s)	1323
XspI	CTAG	4 cut(s)	582, 710, 834, 1368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.