RchiOBHm_Chr2g0168111

Integral membrane protein TerC family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002679
Physical Location & Seq
Forward (+)
82588118 .. 82591476
3359 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGTTGATTGTGTGTGCAGCGGTAGCATTTGGAGTTGGTGTGGGTTTTAAAGACGGCGTTTGCAAGGCAACCGAGTTTTTTTCCGGGTATTTACTGGAGCAAAGTTTGTCAGTGGACAACTTGTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGTTCGTGTTCTTTCATATGGTATTGCTGGTGCAATCATCTTTAGGTTGACATTGATACTCCTCGGAACAGTCACACTTCAGAGGTTTGAGGCAGTAAATCTTTTCCTCGCTGCAATATTACTTTACTCATCCTTCAAGTTATTTTCCAGTGAAGAAGATGACACCGATCTGTCTGACAACTTTGTTGTGAAGACATGCCAGAAATTTATCCCTTTCACCGGTCTTTGGTATTACTGA

Protein Analysis

136

Amino Acids

15.32

Weight (kDa)

5.27

Isoelectric Point (pI)

19.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TerC PF03741 27 - 122 2.7e-21 Integral membrane protein TerC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 392, 399
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 3 cut(s) 145, 154, 310
ApeKI GCWGC 2 cut(s) 17, 284
ApoI RAATTY 1 cut(s) 377
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AsiGI ACCGGT 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 382
BaeI ACNNNNGTAYC 2 cut(s) 152, 185
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 2 cut(s) 29, 271
BceAI ACGGC 1 cut(s) 70
BcnI CCSGG 1 cut(s) 85
BisI GCNGC 2 cut(s) 18, 285
BlsI GCNGC 2 cut(s) 19, 286
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 392
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 399
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 99, 321
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 392, 399
BseNI ACTGG 2 cut(s) 99, 321
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 29, 271
BsgI GTGCAG 1 cut(s) 36
BshTI ACCGGT 1 cut(s) 392
BsiSI CCGG 2 cut(s) 84, 393
BslI CCNNNNNNNGG 2 cut(s) 392, 399
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 2 cut(s) 99, 321
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 244
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 1 cut(s) 343
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 29, 271
BstV2I GAAGAC 1 cut(s) 371
BtsCI GGATG 1 cut(s) 302
BtsIMutI CAGTG 2 cut(s) 117, 328
Cfr10I RCCGGY 1 cut(s) 392
Csp6I GTAC 1 cut(s) 148
CspAI ACCGGT 1 cut(s) 392
CviAII CATG 1 cut(s) 369
CviQI GTAC 1 cut(s) 148
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
DraI TTTAAA 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 236
FaeI CATG 1 cut(s) 372
FaiI YATR 4 cut(s) 167, 190, 192, 370
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 1 cut(s) 368
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 18, 285
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 18, 285
GluI GCNGC 2 cut(s) 18, 285
GsuI CTGGAG 1 cut(s) 116
HapII CCGG 2 cut(s) 84, 393
Hin1II CATG 1 cut(s) 372
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HpaII CCGG 2 cut(s) 84, 393
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 115, 222
Hpy188I TCNGA 4 cut(s) 138, 239, 255, 349
Hpy8I GTNNAC 2 cut(s) 115, 222
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 4 cut(s) 17, 63, 206, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 372
Kzo9I GATC 1 cut(s) 340
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 7 cut(s) 80, 97, 158, 186, 334, 386, 406
Lsp1109I GCAGC 2 cut(s) 29, 271
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 3 cut(s) 338, 341, 376
MluCI AATT 1 cut(s) 377
MnlI CCTC 4 cut(s) 245, 249, 256, 290
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 2 cut(s) 84, 393
MspR9I CCNGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 85
NdeI CATATG 1 cut(s) 190
NdeII GATC 1 cut(s) 340
NlaIII CATG 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 372
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 2 cut(s) 19, 286
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 18, 285
Sau3AI GATC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 85
SetI ASST 3 cut(s) 177, 221, 260
Sse9I AATT 1 cut(s) 377
SsiI CCGC 1 cut(s) 20
SspI AATATT 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 244
TasI AATT 1 cut(s) 377
TatI WGTACW 1 cut(s) 147
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 117, 328
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 17, 284
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 117, 328
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 372
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.