Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004196

Physical Location & Seq

Genomic Coordinates Forward (+)

86331542 .. 86333106

Gene Structure 1565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTAACGTCAACATTGATTCCTCAACCACATTCAATGACTCATGCACCCCTTGAGGAAGATGTGAACATGTCATTTGGAAGCATGCTGTTACAAGGTCTTGCCTTGAGTGAGAGTGAAGTCGATCTTGAGGTGTTGCATATTGAACTTGAGGCACCAACGCCATCTTTAGGCGCTTCTGAGCCTCTAATGCATCGCGTGTGGAAATGCATATATTCAACCAATGCTCTTGAAAATGCTGGTGACTTGCTAGCTGATTGCCCTAGTGCTGTTCATTGCTTCCTAGATTCACGTGCCCACATCACATATCTGCTTGAACTGGTATTCAGTTCATCCGCTGCAGTGTTCGTAAAGGGATTGGTGGCTGTTCTTCTGGGAGAGTGTGTTATCTACAATAAATCAGGTGAAAGTGGGAAATATGGTTTTACTGTAGTTGATTACATAAGCCAGAAGGTTGGACTCACATCATACTTTCTGAAGTTTGATGAAATGAGAAAAAACTTCCTTTTCACCTCTGCAAGGTCTGCTGAGCCCCGTCAACAATTAACTAGATCTGCTTCTGCTGGTATGGTAGAGCCCGAAGATGTTGACGAGAACAATTTATCTGATCAGAAGGATGAGGATCTACCGGTTCTCTCCTCAATCTTTGATGCTGCATTTGTAAACCTTGTTAAGAGTTTAGAGGCAAACATCAAAAAAATCGTTGAGGTTTACACTCATTCAAAGTGCAAGGTGGCAGTGATGCTAGCAGAATTGGAACAAAAGAGTGGGGAAAGTGATGGGGAGTATGTTAAGAAAAGCAGTGCTCTGAAATACAGGACCTCCTTGGCCGCAATGCAAGCTTGGCTGAGGACGTGGCAGGCTGGCAGCAACTGGTGGGGGAAGTCATTCTCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005795 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009791 GO:0009987 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045056 GO:0045184 GO:0046907 GO:0048193 GO:0048211 GO:0048278 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Uso1_p115_C Uso1_p115_head

Protein Analysis

299

Amino Acids

33.01

Weight (kDa)

5.08

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Uso1_p115_head	PF04869	83 - 233	1.2e-13	Uso1 / p115 like vesicle tethering protein, head region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27530
fragaria_vesca	FvH4_1g06690 FvH4_1g06690 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710 FvH4_6g51710
malus_domestica	MD09G1023300.v1.1 MD17G1022800.v1.1
prunus_persica	Prupe.3G293500_v2.0.a1 Prupe.3G293600_v2.0.a1
pyrus_communis	pycom111g01940
rosa_chinensis	RchiOBHm_Chr2g0173241 RchiOBHm_Chr2g0173251
rosa_laevigata	RLG00000022173 RLG00000022175
rosa_multiflora	Rmu_sc0010961.1_g000008 Rmu_sc0010961.1_g000011
rosa_roxburghii	Rroxscaffold_2G00079090
rosa_rugosa	Rorug02G0566800 Rorug02G0566900 Rorug02G0566900 Rorug02G0566900
rosa_samantha	Rh2AG646700 Rh2BG657400 Rh2CG622600 Rh2CG623100 Rh2CG623200 Rh2DG671000 Rh2DG671500 Rh2DG671600
rosa_wichuraiana	Rw2G053120 Rw2G053130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccII	CGCG	1 cut(s)	198
AciI	CCGC	2 cut(s)	336, 831
AclWI	GGATC	1 cut(s)	630
AcoI	YGGCCR	1 cut(s)	828
AcuI	CTGAAG	1 cut(s)	497
AcvI	CACGTG	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	170, 519
AflIII	ACRYGT	1 cut(s)	69
AgeI	ACCGGT	1 cut(s)	628
AgsI	TTSAA	6 cut(s)	36, 146, 219, 233, 317, 723
AjiI	CACGTC	1 cut(s)	855
AluBI	AGCT	2 cut(s)	254, 842
AluI	AGCT	2 cut(s)	254, 842
Alw21I	GWGCWC	1 cut(s)	808
AlwI	GGATC	1 cut(s)	630
AlwNI	CAGNNNCTG	1 cut(s)	873
AoxI	GGCC	1 cut(s)	828
ApeKI	GCWGC	3 cut(s)	338, 653, 867
AsiGI	ACCGGT	1 cut(s)	628
Asp700I	GAANNNNTTC	1 cut(s)	887
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	819
AsuHPI	GGTGA	3 cut(s)	254, 416, 502
AsuNHI	GCTAGC	2 cut(s)	250, 745
AvaII	GGWCC	1 cut(s)	819
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	2 cut(s)	534, 579
BbrPI	CACGTG	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	808
BbvCI	CCTCAGC	1 cut(s)	848
BbvI	GCAGC	3 cut(s)	325, 640, 879
BccI	CCATC	2 cut(s)	172, 773
BclI	TGATCA	1 cut(s)	607
BfaI	CTAG	5 cut(s)	251, 264, 284, 549, 746
BfmI	CTRYAG	2 cut(s)	339, 429
BfoI	RGCGCY	1 cut(s)	177
BglII	AGATCT	1 cut(s)	551
BisI	GCNGC	4 cut(s)	339, 654, 831, 868
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	4 cut(s)	340, 655, 832, 869
Bme18I	GGWCC	1 cut(s)	819
BmgBI	CACGTC	1 cut(s)	855
BmgT120I	GGNCC	1 cut(s)	819
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	3 cut(s)	202, 640, 732
BmtI	GCTAGC	2 cut(s)	254, 749
Bpu10I	CCTNAGC	1 cut(s)	848
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	4 cut(s)	74, 127, 149, 170
BsaAI	YACGTR	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	825
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	4 cut(s)	369, 399, 806, 836
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 519
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	2 cut(s)	324, 878
Bse3DI	GCAATG	2 cut(s)	274, 840
Bse8I	GATNNNNATC	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	825
BseGI	GGATG	2 cut(s)	332, 622
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	170, 519
BseMI	GCAATG	2 cut(s)	274, 840
BseMII	CTCAG	3 cut(s)	171, 519, 839
BseNI	ACTGG	2 cut(s)	324, 878
BseRI	GAGGAG	1 cut(s)	628
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	325, 640, 879
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	830
BshNI	GGYRCC	1 cut(s)	154
BshTI	ACCGGT	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	170, 519
BsnI	GGCC	1 cut(s)	830
Bsp1286I	GDGCHC	4 cut(s)	298, 534, 579, 808
Bsp143I	GATC	4 cut(s)	124, 551, 607, 622
Bsp1720I	GCTNAGC	1 cut(s)	528
BspACI	CCGC	2 cut(s)	336, 831
BspANI	GGCC	1 cut(s)	830
BspCNI	CTCAG	3 cut(s)	172, 520, 840
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	343
BspOI	GCTAGC	2 cut(s)	254, 749
BspPI	GGATC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	154
BsrDI	GCAATG	2 cut(s)	274, 840
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	324, 878
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	825
BssMI	GATC	4 cut(s)	124, 551, 607, 622
BssT1I	CCWWGG	1 cut(s)	825
Bst4CI	ACNGT	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	6 cut(s)	86, 252, 747, 840, 861, 865
BstDEI	CTNAG	3 cut(s)	180, 528, 848
BstENI	CCTNNNNNAGG	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	332, 622
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	4 cut(s)	127, 554, 610, 625
BstMBI	GATC	4 cut(s)	124, 551, 607, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 524, 839, 844
BstNSI	RCATGY	2 cut(s)	73, 88
BstSFI	CTRYAG	2 cut(s)	339, 429
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	325, 640, 879
BstX2I	RGATCY	2 cut(s)	551, 622
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	2 cut(s)	551, 622
BsuRI	GGCC	1 cut(s)	830
BtgZI	GCGATG	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	855
BtsCI	GGATG	2 cut(s)	332, 622
BtsI	GCAGTG	3 cut(s)	348, 744, 808
BtsIMutI	CAGTG	3 cut(s)	348, 744, 808
Cac8I	GCNNGC	6 cut(s)	86, 252, 747, 840, 861, 865
CaiI	CAGNNNCTG	1 cut(s)	873
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	819
CspAI	ACCGGT	1 cut(s)	628
CviAII	CATG	3 cut(s)	44, 70, 85
DdeI	CTNAG	3 cut(s)	180, 528, 848
DpnI	GATC	4 cut(s)	126, 553, 609, 624
DpnII	GATC	4 cut(s)	124, 551, 607, 622
EaeI	YGGCCR	1 cut(s)	828
Eco130I	CCWWGG	1 cut(s)	825
Eco24I	GRGCYC	2 cut(s)	534, 579
Eco47I	GGWCC	1 cut(s)	819
Eco57I	CTGAAG	1 cut(s)	497
Eco72I	CACGTG	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	819
EcoT14I	CCWWGG	1 cut(s)	825
EcoT22I	ATGCAT	2 cut(s)	195, 212
EcoT38I	GRGCYC	2 cut(s)	534, 579
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	3 cut(s)	47, 73, 88
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	3 cut(s)	43, 69, 84
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	339, 654, 831, 868
FokI	GGATG	2 cut(s)	319, 629
FriOI	GRGCYC	2 cut(s)	534, 579
Fsp4HI	GCNGC	4 cut(s)	339, 654, 831, 868
FspBI	CTAG	5 cut(s)	251, 264, 284, 549, 746
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	4 cut(s)	339, 654, 831, 868
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	830
HapII	CCGG	1 cut(s)	629
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	47, 73, 88
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	4 cut(s)	6, 12, 539, 589
HindII	GTYRAC	4 cut(s)	6, 12, 539, 589
HindIII	AAGCTT	1 cut(s)	840
HinfI	GANTC	4 cut(s)	19, 40, 287, 459
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	3 cut(s)	254, 416, 502
Hpy166II	GTNNAC	7 cut(s)	6, 12, 67, 539, 589, 664, 712
Hpy188I	TCNGA	6 cut(s)	181, 477, 607, 612, 810, 899
Hpy188III	TCNNGA	2 cut(s)	128, 230
Hpy8I	GTNNAC	7 cut(s)	6, 12, 67, 539, 589, 664, 712
HpyAV	CCTTC	2 cut(s)	445, 607
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	3 cut(s)	8, 292, 854
HpyCH4V	TGCA	9 cut(s)	47, 139, 193, 210, 341, 518, 656, 729, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 524, 839, 844
HpyF3I	CTNAG	3 cut(s)	180, 528, 848
HpySE526I	ACGT	3 cut(s)	8, 292, 854
Hsp92II	CATG	3 cut(s)	47, 73, 88
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	607
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	124, 551, 607, 622
Lsp1109I	GCAGC	3 cut(s)	325, 640, 879
LweI	GCATC	3 cut(s)	202, 640, 732
MaeI	CTAG	5 cut(s)	251, 264, 284, 549, 746
MaeII	ACGT	3 cut(s)	8, 292, 854
MaeIII	GTNAC	2 cut(s)	90, 242
MalI	GATC	4 cut(s)	126, 553, 609, 624
MboI	GATC	4 cut(s)	124, 551, 607, 622
MboII	GAAGA	3 cut(s)	71, 362, 593
MflI	RGATCY	2 cut(s)	551, 622
MhlI	GDGCHC	4 cut(s)	298, 534, 579, 808
MluCI	AATT	3 cut(s)	542, 598, 752
MlyI	GAGTC	2 cut(s)	34, 453
MmeI	TCCRAC	1 cut(s)	436
Mph1103I	ATGCAT	2 cut(s)	195, 212
MroXI	GAANNNNTTC	1 cut(s)	887
MseI	TTAA	4 cut(s)	5, 545, 672, 792
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	629
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	4 cut(s)	190, 524, 839, 844
NdeII	GATC	4 cut(s)	124, 551, 607, 622
NheI	GCTAGC	2 cut(s)	250, 745
NlaIII	CATG	3 cut(s)	47, 73, 88
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	242
NsiI	ATGCAT	2 cut(s)	195, 212
NspI	RCATGY	2 cut(s)	73, 88
PaeI	GCATGC	1 cut(s)	88
PciI	ACATGT	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	2 cut(s)	19, 287
PinAI	ACCGGT	1 cut(s)	628
PkrI	GCNGC	4 cut(s)	340, 655, 832, 869
PleI	GAGTC	2 cut(s)	34, 453
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	2 cut(s)	34, 453
Ppu21I	YACGTR	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	819
PscI	ACATGT	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	819
PspCI	CACGTG	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	819
PspPPI	RGGWCCY	1 cut(s)	819
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	873
PsuI	RGATCY	2 cut(s)	551, 622
SaqAI	TTAA	4 cut(s)	5, 545, 672, 792
SatI	GCNGC	4 cut(s)	339, 654, 831, 868
Sau3AI	GATC	4 cut(s)	124, 551, 607, 622
Sau96I	GGNCC	1 cut(s)	819
SchI	GAGTC	2 cut(s)	34, 453
SduI	GDGCHC	4 cut(s)	298, 534, 579, 808
SfaNI	GCATC	3 cut(s)	202, 640, 732
SfcI	CTRYAG	2 cut(s)	339, 429
SinI	GGWCC	1 cut(s)	819
SmlI	CTYRAG	4 cut(s)	53, 106, 128, 149
SmoI	CTYRAG	4 cut(s)	53, 106, 128, 149
SphI	GCATGC	1 cut(s)	88
Sse9I	AATT	3 cut(s)	542, 598, 752
SsiI	CCGC	2 cut(s)	336, 831
SspMI	CTAG	5 cut(s)	251, 264, 284, 549, 746
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	3 cut(s)	11, 295, 857
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	883
TasI	AATT	3 cut(s)	542, 598, 752
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	2 cut(s)	19, 287
Tru1I	TTAA	4 cut(s)	5, 545, 672, 792
Tru9I	TTAA	4 cut(s)	5, 545, 672, 792
TscAI	CASTG	3 cut(s)	348, 744, 808
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	3 cut(s)	338, 653, 867
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	263, 321, 501
TspRI	CASTG	3 cut(s)	348, 744, 808
VpaK11BI	GGWCC	1 cut(s)	819
XagI	CCTNNNNNAGG	1 cut(s)	517
XceI	RCATGY	2 cut(s)	73, 88
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	5 cut(s)	251, 264, 284, 549, 746
Zsp2I	ATGCAT	2 cut(s)	195, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.