Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012678

Physical Location & Seq

Genomic Coordinates Reverse (-)

5360564 .. 5364985

Gene Structure 4422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCAAGTGATGGAGTTGCCTTCTGCTTAGATTCCATAGACCTCAATTCAGGCACCAATGCATTGACTCAATTCATGACCAAGAGTGAGACCATCCCTGAACTTCAACCTGAAGCTGGAGTCTTCTCGTTCCAGTTCACATGGGAGGAGATTCAGTCCTTAAAAACCCAACTGCAAAGTCCCTATGGAACCAAGGAAAACGTGTATAGAAACCCAGCTAACAAGGATGCAGGCAAACTGGTGACCCTTAATGAATTCCTAGAGTTTGCCAAGGAAAAGGCAACTAGTGGAATTTTGATCGACATTCAGAATGCGCTGTACCTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

109

Amino Acids

12.07

Weight (kDa)

4.45

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012678)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0317811
rosa_laevigata	RLG00000008297
rosa_multiflora	Rmu_co8382301.1_g000001 Rmu_sc0000654.1_g000044 Rmu_sc0000772.1_g000024 Rmu_sc0000772.1_g000027 Rmu_sc0000772.1_g000042 Rmu_sc0010905.1_g000001
rosa_samantha	Rh1AG029500 Rh1BG025600 Rh1CG027300 Rh1DG042500 Rh1DG043000 Rh1DG043100 Rh1DG043300 Rh1DG043800 Rh4BG172400
rosa_wichuraiana	Rw1G002160 Rw1G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	254, 291
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	1 cut(s)	107
AhlI	ACTAGT	1 cut(s)	284
AluBI	AGCT	2 cut(s)	116, 218
AluI	AGCT	2 cut(s)	116, 218
Alw26I	GTCTC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	254, 291
AspLEI	GCGC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	115
BccI	CCATC	2 cut(s)	5, 101
BcoDI	GTCTC	1 cut(s)	83
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	3 cut(s)	260, 285, 323
BmiI	GGNNCC	2 cut(s)	55, 190
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	192, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	133, 243
BseDI	CCNNGG	2 cut(s)	192, 270
BseGI	GGATG	2 cut(s)	93, 232
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	133, 243
BseRI	GAGGAG	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	316
Bso31I	GGTCTC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	55, 190
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	133, 243
BssECI	CCNNGG	2 cut(s)	192, 270
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	192, 270
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	28
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	93, 232
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	297
BstPI	GGTNACC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	93, 232
Cac8I	GCNNGC	1 cut(s)	232
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	3 cut(s)	76, 141, 327
CviJI	RGCY	2 cut(s)	116, 218
CviKI_1	RGCY	2 cut(s)	116, 218
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	192, 270
Eco31I	GGTCTC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	254
EcoT14I	CCWWGG	2 cut(s)	192, 270
EcoT22I	ATGCAT	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	192, 270
FaeI	CATG	3 cut(s)	79, 144, 330
FaiI	YATR	6 cut(s)	38, 77, 142, 186, 207, 328
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	3 cut(s)	75, 140, 326
FokI	GGATG	2 cut(s)	80, 239
FspBI	CTAG	3 cut(s)	260, 285, 323
GlaI	GCGC	1 cut(s)	315
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	79, 144, 330
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	4 cut(s)	32, 67, 120, 151
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	62, 175, 230
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	79, 144, 330
HspAI	GCGC	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	297
LpnPI	CCDG	8 cut(s)	36, 102, 111, 123, 146, 216, 224, 228
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	260, 285, 323
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	1 cut(s)	115
MluCI	AATT	4 cut(s)	46, 71, 254, 291
MlyI	GAGTC	2 cut(s)	61, 129
MnlI	CCTC	2 cut(s)	53, 139
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	2 cut(s)	161, 249
Mva1269I	GAATGC	1 cut(s)	316
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	3 cut(s)	79, 144, 330
NlaIV	GGNNCC	2 cut(s)	55, 190
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	64
PagI	TCATGA	1 cut(s)	75
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	32, 151
PleI	GAGTC	2 cut(s)	61, 128
PpsI	GAGTC	2 cut(s)	61, 128
PspEI	GGTNACC	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	55, 190
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SaqAI	TTAA	2 cut(s)	161, 249
Sau3AI	GATC	1 cut(s)	297
SchI	GAGTC	2 cut(s)	61, 129
SetI	ASST	6 cut(s)	45, 112, 118, 204, 220, 324
SfaNI	GCATC	1 cut(s)	217
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	4 cut(s)	46, 71, 254, 291
SspMI	CTAG	3 cut(s)	260, 285, 323
StyI	CCWWGG	2 cut(s)	192, 270
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	300
TasI	AATT	4 cut(s)	46, 71, 254, 291
TfiI	GAWTC	2 cut(s)	32, 151
Tru1I	TTAA	2 cut(s)	161, 249
Tru9I	TTAA	2 cut(s)	161, 249
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	64, 267
XapI	RAATTY	2 cut(s)	254, 291
XspI	CTAG	3 cut(s)	260, 285, 323
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.