Rh1DG042500

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012678
Physical Location & Seq
Forward (+)
6800353 .. 6803386
3034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG042500.1

Sequence Viewer

Length: 963 bp
ATGCTCGGTAAGAAGTTCGTCAAAGCTTACATTCCAGGTATTGGTTGCCACAAGTATTATCCAAATATTACAGGATGTGATGCACCTCATGAGTTGGGTTTCAATTATGAGTATCCTGGACCTCTGGCCTTTTATAAGGGCTTCATCCCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCCTTGAGCTGGTACAAGTTTCGACACCTTCCCTGTTTATTAGTACAGATTTCCCACGTACGGCATCAGAAGCCATTGCATGCTTTTCACATAACAAGGATGGCAAGCCTTACAAAGGCAAAGGGAGTCCACCGATCATAAATAGAAATGGAGCGACTGGGAACTATCCTGGTTGCACTAACCTTTCTTATCAGAGAGCAGTAGATGATGGCGCTGATATAATCGATTGCTCGATCCAAATGTCAAGTGATGGAGTTGCCTTCTGCTTAGATTCCATAGACCTCAACTCAGGCACCAATGCATTGACTCAATTCATGACCAAGGGTGAGACTATCCCTGAACTTCAACCTGAAGCTGGAGTCTTCTCGTTCCAGTTCACATGGGAGGAGATTCAGTACTTAAAAACCCAACTGCAAAGTCCCTATGGAACCAAGGAAAACGTGTATAGAAACCCAGCTAACAAGGATGCAGGCAAACTGGTGACCCTTAATGAATTCCTAGAGTTTGCCAAGGAAAAGGCAACTACTGGAATTTTGATCGACATTCAGAATGCGATGTACCTAGCATCAAAGGCGGGTCTGGACATTGTTGGTACCGTAACCTCTGCCTTGAAAAATGCCACACTCGACAAGCAATCGACTCAAAAGGTCATGATCAAATCAGATGACACTTCAGTCTTGTCTAAATTCGCTGATGAGAAAGCATACACAAGGGTGTACAACATTAAGGAGGAAATAGGTGCAGGGTGTACAACATTAAGGAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

320

Amino Acids

35.19

Weight (kDa)

6.82

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 115 - 302 8.5e-17 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AasI GACNNNNNNGTC 1 cut(s) 866
Acc65I GGTACC 1 cut(s) 785
AccB1I GGYRCC 2 cut(s) 485, 785
AccB7I CCANNNNNTGG 2 cut(s) 41, 155
AciI CCGC 1 cut(s) 767
AclWI GGATC 2 cut(s) 175, 421
AcsI RAATTY 4 cut(s) 151, 686, 723, 878
AcuI CTGAAG 2 cut(s) 564, 849
AfaI GTAC 8 cut(s) 207, 238, 253, 590, 752, 787, 911, 943
AfiI CCNNNNNNNGG 6 cut(s) 41, 155, 202, 253, 308, 548
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 3 cut(s) 103, 539, 805
AjnI CCWGG 3 cut(s) 34, 115, 361
AleI CACNNNNGTG 1 cut(s) 905
AluBI AGCT 4 cut(s) 26, 202, 548, 650
AluI AGCT 4 cut(s) 26, 202, 548, 650
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 2 cut(s) 175, 421
AoxI GGCC 1 cut(s) 126
ApoI RAATTY 4 cut(s) 151, 686, 723, 878
Asp718I GGTACC 1 cut(s) 785
AspLEI GCGC 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 530, 685
AvaII GGWCC 1 cut(s) 119
BanI GGYRCC 2 cut(s) 485, 785
BbsI GAAGAC 1 cut(s) 547
BccI CCATC 3 cut(s) 287, 395, 437
BceAI ACGGC 2 cut(s) 176, 270
BciT130I CCWGG 3 cut(s) 36, 117, 363
BciVI GTATCC 1 cut(s) 123
BclI TGATCA 2 cut(s) 180, 846
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 3 cut(s) 164, 692, 755
BfoI RGCGCY 1 cut(s) 408
BfuI GTATCC 1 cut(s) 123
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 3 cut(s) 36, 117, 363
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 3 cut(s) 487, 622, 787
BmrFI CCNGG 3 cut(s) 36, 117, 363
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 4 cut(s) 70, 266, 649, 767
BmuI ACTGGG 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 417
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 513, 624, 702
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 6 cut(s) 41, 155, 202, 253, 308, 548
Bse1I ACTGG 4 cut(s) 355, 565, 675, 724
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 3 cut(s) 36, 117, 363
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 513, 624, 702
BseGI GGATG 4 cut(s) 80, 144, 298, 664
BseLI CCNNNNNNNGG 6 cut(s) 41, 155, 202, 253, 308, 548
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 4 cut(s) 355, 565, 675, 724
BseRI GAGGAG 1 cut(s) 593
BseYI CCCAGC 1 cut(s) 646
BsgI GTGCAG 1 cut(s) 954
BshFI GGCC 1 cut(s) 128
BshNI GGYRCC 2 cut(s) 485, 785
BshVI ATCGAT 1 cut(s) 417
BsiWI CGTACG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 6 cut(s) 41, 155, 202, 253, 308, 548
BsmAI GTCTC 1 cut(s) 515
BsmFI GGGAC 1 cut(s) 597
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 1 cut(s) 128
Bsp1407I TGTACA 2 cut(s) 909, 941
Bsp143I GATC 6 cut(s) 167, 180, 327, 426, 729, 846
BspACI CCGC 1 cut(s) 767
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 494
BspDI ATCGAT 1 cut(s) 417
BspHI TCATGA 3 cut(s) 88, 507, 843
BspLI GGNNCC 3 cut(s) 487, 622, 787
BspPI GGATC 2 cut(s) 175, 421
BspT107I GGYRCC 2 cut(s) 485, 785
BsrDI GCAATG 1 cut(s) 267
BsrGI TGTACA 2 cut(s) 909, 941
BsrI ACTGG 4 cut(s) 355, 565, 675, 724
BssECI CCNNGG 3 cut(s) 513, 624, 702
BssMI GATC 6 cut(s) 167, 180, 327, 426, 729, 846
BssT1I CCWWGG 3 cut(s) 513, 624, 702
Bst2UI CCWGG 3 cut(s) 36, 117, 363
Bst4CI ACNGT 1 cut(s) 790
BstAUI TGTACA 2 cut(s) 909, 941
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 274, 299, 664
BstDEI CTNAG 2 cut(s) 460, 481
BstEII GGTNACC 1 cut(s) 673
BstENI CCTNNNNNAGG 1 cut(s) 306
BstF5I GGATG 4 cut(s) 80, 144, 298, 664
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 6 cut(s) 170, 183, 330, 429, 732, 849
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 6 cut(s) 167, 180, 327, 426, 729, 846
BstMWI GCNNNNNNNGC 2 cut(s) 263, 764
BstNI CCWGG 3 cut(s) 36, 117, 363
BstNSI RCATGY 1 cut(s) 276
BstPI GGTNACC 1 cut(s) 673
BstSCI CCNGG 3 cut(s) 34, 115, 361
BstV2I GAAGAC 1 cut(s) 547
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 417
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 417
BtgZI GCGATG 1 cut(s) 761
BtsCI GGATG 4 cut(s) 80, 144, 298, 664
Cac8I GCNNGC 3 cut(s) 274, 299, 664
CciI TCATGA 3 cut(s) 88, 507, 843
CfoI GCGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 119
ClaI ATCGAT 1 cut(s) 417
Csp6I GTAC 8 cut(s) 206, 237, 252, 589, 751, 786, 910, 942
CviAII CATG 6 cut(s) 89, 184, 273, 508, 573, 844
CviJI RGCY 9 cut(s) 26, 128, 141, 163, 202, 266, 301, 548, 650
CviKI_1 RGCY 9 cut(s) 26, 128, 141, 163, 202, 266, 301, 548, 650
CviQI GTAC 8 cut(s) 206, 237, 252, 589, 751, 786, 910, 942
DdeI CTNAG 2 cut(s) 460, 481
DpnI GATC 6 cut(s) 169, 182, 329, 428, 731, 848
DpnII GATC 6 cut(s) 167, 180, 327, 426, 729, 846
DrdI GACNNNNNNGTC 1 cut(s) 866
DseDI GACNNNNNNGTC 1 cut(s) 866
Eco130I CCWWGG 3 cut(s) 513, 624, 702
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 2 cut(s) 564, 849
Eco91I GGTNACC 1 cut(s) 673
EcoNI CCTNNNNNAGG 1 cut(s) 306
EcoO65I GGTNACC 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 3 cut(s) 34, 115, 361
EcoT14I CCWWGG 3 cut(s) 513, 624, 702
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 3 cut(s) 513, 624, 702
FaeI CATG 6 cut(s) 92, 187, 276, 511, 576, 847
FaqI GGGAC 1 cut(s) 597
FatI CATG 6 cut(s) 88, 183, 272, 507, 572, 843
FauI CCCGC 1 cut(s) 760
FbaI TGATCA 2 cut(s) 180, 846
FokI GGATG 4 cut(s) 87, 131, 305, 671
FspBI CTAG 3 cut(s) 164, 692, 755
GlaI GCGC 1 cut(s) 406
GsaI CCCAGC 1 cut(s) 650
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 1 cut(s) 128
HhaI GCGC 1 cut(s) 407
Hin1II CATG 6 cut(s) 92, 187, 276, 511, 576, 847
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 6 cut(s) 319, 464, 499, 552, 583, 832
HphI GGTGA 2 cut(s) 530, 685
Hpy166II GTNNAC 4 cut(s) 323, 570, 910, 942
Hpy188I TCNGA 4 cut(s) 262, 387, 741, 856
Hpy188III TCNNGA 4 cut(s) 89, 508, 773, 844
Hpy8I GTNNAC 4 cut(s) 323, 570, 910, 942
HpyAV CCTTC 2 cut(s) 231, 463
HpyCH4III ACNGT 1 cut(s) 790
HpyCH4IV ACGT 2 cut(s) 250, 633
HpyCH4V TGCA 7 cut(s) 83, 272, 369, 494, 607, 662, 935
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 764
HpyF3I CTNAG 2 cut(s) 460, 481
HpySE526I ACGT 2 cut(s) 250, 633
Hsp92II CATG 6 cut(s) 92, 187, 276, 511, 576, 847
HspAI GCGC 1 cut(s) 405
KpnI GGTACC 1 cut(s) 789
Ksp22I TGATCA 2 cut(s) 180, 846
Kzo9I GATC 6 cut(s) 167, 180, 327, 426, 729, 846
LmnI GCTCC 1 cut(s) 344
LweI GCATC 4 cut(s) 70, 266, 649, 767
MaeI CTAG 3 cut(s) 164, 692, 755
MaeII ACGT 2 cut(s) 250, 633
MaeIII GTNAC 2 cut(s) 673, 790
MalI GATC 6 cut(s) 169, 182, 329, 428, 731, 848
MboI GATC 6 cut(s) 167, 180, 327, 426, 729, 846
MboII GAAGA 1 cut(s) 547
MflI RGATCY 1 cut(s) 167
MluCI AATT 6 cut(s) 103, 151, 503, 686, 723, 878
MlyI GAGTC 4 cut(s) 328, 493, 561, 826
MnlI CCTC 7 cut(s) 96, 132, 485, 571, 805, 916, 948
Mph1103I ATGCAT 1 cut(s) 496
MseI TTAA 4 cut(s) 593, 681, 918, 950
MslI CAYNNNNRTG 1 cut(s) 905
MspR9I CCNGG 3 cut(s) 36, 117, 363
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 3 cut(s) 36, 117, 363
MwoI GCNNNNNNNGC 2 cut(s) 263, 764
NdeII GATC 6 cut(s) 167, 180, 327, 426, 729, 846
NlaIII CATG 6 cut(s) 92, 187, 276, 511, 576, 847
NlaIV GGNNCC 3 cut(s) 487, 622, 787
NmuCI GTSAC 1 cut(s) 673
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 276
OliI CACNNNNGTG 1 cut(s) 905
PaeI GCATGC 1 cut(s) 276
PagI TCATGA 3 cut(s) 88, 507, 843
PctI GAATGC 1 cut(s) 748
PfeI GAWTC 2 cut(s) 464, 583
Pfl23II CGTACG 1 cut(s) 251
PflMI CCANNNNNTGG 2 cut(s) 41, 155
PfoI TCCNGGA 1 cut(s) 115
PleI GAGTC 4 cut(s) 327, 493, 560, 826
PpsI GAGTC 4 cut(s) 327, 493, 560, 826
Ppu21I YACGTR 1 cut(s) 251
PsiI TTATAA 1 cut(s) 135
Psp6I CCWGG 3 cut(s) 34, 115, 361
PspEI GGTNACC 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 646
PspGI CCWGG 3 cut(s) 34, 115, 361
PspLI CGTACG 1 cut(s) 251
PspN4I GGNNCC 3 cut(s) 487, 622, 787
PspPI GGNCC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 8 cut(s) 207, 238, 253, 590, 752, 787, 911, 943
RsaNI GTAC 8 cut(s) 206, 237, 252, 589, 751, 786, 910, 942
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 4 cut(s) 593, 681, 918, 950
Sau3AI GATC 6 cut(s) 167, 180, 327, 426, 729, 846
Sau96I GGNCC 1 cut(s) 119
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 4 cut(s) 328, 493, 561, 826
ScrFI CCNGG 3 cut(s) 36, 117, 363
SfaNI GCATC 4 cut(s) 70, 266, 649, 767
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SphI GCATGC 1 cut(s) 276
Sse9I AATT 6 cut(s) 103, 151, 503, 686, 723, 878
SsiI CCGC 1 cut(s) 767
SspI AATATT 1 cut(s) 67
SspMI CTAG 3 cut(s) 164, 692, 755
StyD4I CCNGG 3 cut(s) 34, 115, 361
StyI CCWWGG 3 cut(s) 513, 624, 702
TaaI ACNGT 1 cut(s) 790
TaiI ACGT 2 cut(s) 253, 636
TaqI TCGA 6 cut(s) 215, 417, 425, 732, 819, 830
TasI AATT 6 cut(s) 103, 151, 503, 686, 723, 878
TatI WGTACW 4 cut(s) 236, 588, 909, 941
TfiI GAWTC 2 cut(s) 464, 583
Tru1I TTAA 4 cut(s) 593, 681, 918, 950
Tru9I TTAA 4 cut(s) 593, 681, 918, 950
TseFI GTSAC 1 cut(s) 673
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 3 cut(s) 133, 496, 699
Van91I CCANNNNNTGG 2 cut(s) 41, 155
VpaK11BI GGWCC 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 306
XapI RAATTY 4 cut(s) 151, 686, 723, 878
XceI RCATGY 1 cut(s) 276
XspI CTAG 3 cut(s) 164, 692, 755
ZrmI AGTACT 1 cut(s) 590
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.