Rw1G002190

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012678
Physical Location & Seq
Reverse (-)
3944507 .. 3946364
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002190.1

Sequence Viewer

Length: 921 bp
ATGATTGGAGATTCTTCTGCTTACAAAAACACAATCGATTGCTTCGTTGAAACTTTGAAGAATGATGGACCTCTGGCCTTTTATAAGGGCTTCATCCCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCCTTGAGCAGGTACAAGTTTCGACACCTTCCCTGTTTATTAGTACAGATTTCCCACGTACGGCATCAGAAGCCATTGATTCCATAGACCTCAACTCAGGCACCAATGCATTGACTCAATTCATGACCAAGAGTGAGACTATCCCTGAACTTCAACCTGAAGCTGGAGTCTTCTCGTTCCAGTTCACATGGGAGGAGATTCAGTCCTTAAAAACCCAACTGCAAAGTCCCTATGGAACCAAGGAAAACGTGTATAGAAACCCAGCTAACAAGGATGCAGGCAAACTGGTGACCCTTAATGAATTCCTAGAGTTTGCCAAGGAAAAGGCAACTACTGGAATTTTGATCGACATTCAGAATGCGCTGTACCTAGCATCAAAGGCGGGTCTGGACATTGTTGGTACCGTAACCTTTGCCTTGAAAAATGCCACACTCGACAAGCAATCGACTCAAAAGGTCATGATCAAATCAGATGGCACTTCAGTCTTGTCTAAATTCGCTGATGAGAAAGCATACACAAGGGTGTACAACATTAAGGAGGAAATAGGTGCTACACCAAAGCAATCAATTGAAGAGATCAAGAAGTTTGCAGATGGAGTAACTGTCTCCAGAAATTCAGTTATTCAGTCCACCAGTTCCTTCATCTCGGGAGAAACTCACGTCATCAAGGAATTGCAGGCTGCAAATCTTTCAGTGTACATCAATTACCTGAAAAACGAATTCATCAGTCTCATGTTTGATTATCTCTTGGACCGCATTACCGAAATAGCTACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

306

Amino Acids

34.0

Weight (kDa)

5.1

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 7 - 53 6.9e-09 Mitochondrial carrier protein
GDPD PF03009 105 - 281 1e-05 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 142
Acc65I GGTACC 1 cut(s) 542
AccB1I GGYRCC 2 cut(s) 242, 542
AccB7I CCANNNNNTGG 1 cut(s) 104
AciI CCGC 2 cut(s) 524, 895
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 6 cut(s) 100, 443, 480, 635, 754, 860
AcuI CTGAAG 2 cut(s) 321, 606
AfaI GTAC 7 cut(s) 156, 187, 202, 509, 544, 668, 839
AfiI CCNNNNNNNGG 4 cut(s) 104, 151, 202, 305
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 5 cut(s) 50, 58, 296, 562, 713
AjiI CACGTC 1 cut(s) 802
AleI CACNNNNGTG 1 cut(s) 662
AluBI AGCT 3 cut(s) 305, 407, 911
AluI AGCT 3 cut(s) 305, 407, 911
Alw26I GTCTC 3 cut(s) 272, 751, 875
AlwI GGATC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 787
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 821
ApoI RAATTY 6 cut(s) 100, 443, 480, 635, 754, 860
Asp718I GGTACC 1 cut(s) 542
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 2 cut(s) 68, 892
AsuHPI GGTGA 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 787
AvaII GGWCC 2 cut(s) 68, 892
BanI GGYRCC 2 cut(s) 242, 542
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 808
BccI CCATC 3 cut(s) 59, 608, 728
BceAI ACGGC 2 cut(s) 125, 219
BclI TGATCA 2 cut(s) 129, 603
BcoDI GTCTC 3 cut(s) 272, 751, 875
BfaI CTAG 3 cut(s) 113, 449, 512
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 1 cut(s) 822
BlsI GCNGC 1 cut(s) 823
Bme18I GGWCC 2 cut(s) 68, 892
BmeT110I CYCGRG 1 cut(s) 787
BmgBI CACGTC 1 cut(s) 802
BmgT120I GGNCC 2 cut(s) 68, 892
BmiI GGNNCC 3 cut(s) 244, 379, 544
BmsI GCATC 3 cut(s) 215, 406, 524
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 2 cut(s) 327, 733
BpuEI CTTGAG 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 381, 459
BsaXI ACNNNNNCTCC 4 cut(s) 329, 359, 729, 759
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 151, 202, 305
Bse1I ACTGG 4 cut(s) 322, 432, 481, 774
BseCI ATCGAT 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 381, 459
BseGI GGATG 2 cut(s) 93, 421
BseLI CCNNNNNNNGG 4 cut(s) 104, 151, 202, 305
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 4 cut(s) 322, 432, 481, 774
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 808
BseYI CCCAGC 1 cut(s) 403
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 2 cut(s) 242, 542
BshVI ATCGAT 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 787
BsiWI CGTACG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 4 cut(s) 104, 151, 202, 305
BsmAI GTCTC 3 cut(s) 272, 751, 875
BsmFI GGGAC 1 cut(s) 354
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 787
Bsp1407I TGTACA 2 cut(s) 666, 837
Bsp143I GATC 5 cut(s) 116, 129, 486, 603, 717
BspACI CCGC 2 cut(s) 524, 895
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 251
BspDI ATCGAT 1 cut(s) 36
BspHI TCATGA 2 cut(s) 264, 600
BspLI GGNNCC 3 cut(s) 244, 379, 544
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 1 cut(s) 124
BspT107I GGYRCC 2 cut(s) 242, 542
BsrGI TGTACA 2 cut(s) 666, 837
BsrI ACTGG 4 cut(s) 322, 432, 481, 774
BssECI CCNNGG 2 cut(s) 381, 459
BssMI GATC 5 cut(s) 116, 129, 486, 603, 717
BssT1I CCWWGG 2 cut(s) 381, 459
Bst4CI ACNGT 2 cut(s) 547, 745
Bst6I CTCTTC 1 cut(s) 708
BstAUI TGTACA 2 cut(s) 666, 837
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 421, 819
BstDEI CTNAG 1 cut(s) 238
BstEII GGTNACC 1 cut(s) 430
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 93, 421
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 5 cut(s) 119, 132, 489, 606, 720
BstMAI GTCTC 3 cut(s) 272, 751, 875
BstMBI GATC 5 cut(s) 116, 129, 486, 603, 717
BstMWI GCNNNNNNNGC 2 cut(s) 212, 521
BstPI GGTNACC 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 808
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 36
BsuRI GGCC 1 cut(s) 77
BsuTUI ATCGAT 1 cut(s) 36
BtrI CACGTC 1 cut(s) 802
BtsCI GGATG 2 cut(s) 93, 421
BtsIMutI CAGTG 1 cut(s) 840
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 2 cut(s) 421, 819
CciI TCATGA 2 cut(s) 264, 600
CfoI GCGC 1 cut(s) 505
Cfr13I GGNCC 2 cut(s) 68, 892
ClaI ATCGAT 1 cut(s) 36
Csp6I GTAC 7 cut(s) 155, 186, 201, 508, 543, 667, 838
CviAII CATG 5 cut(s) 133, 265, 330, 601, 874
CviJI RGCY 8 cut(s) 77, 90, 112, 215, 305, 407, 821, 911
CviKI_1 RGCY 8 cut(s) 77, 90, 112, 215, 305, 407, 821, 911
CviQI GTAC 7 cut(s) 155, 186, 201, 508, 543, 667, 838
DdeI CTNAG 1 cut(s) 238
DpnI GATC 5 cut(s) 118, 131, 488, 605, 719
DpnII GATC 5 cut(s) 116, 129, 486, 603, 717
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Eco130I CCWWGG 2 cut(s) 381, 459
Eco47I GGWCC 2 cut(s) 68, 892
Eco57I CTGAAG 2 cut(s) 321, 606
Eco88I CYCGRG 1 cut(s) 787
Eco91I GGTNACC 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 430
EcoRI GAATTC 2 cut(s) 443, 860
EcoT14I CCWWGG 2 cut(s) 381, 459
EcoT22I ATGCAT 1 cut(s) 253
ErhI CCWWGG 2 cut(s) 381, 459
FaeI CATG 5 cut(s) 136, 268, 333, 604, 877
FaqI GGGAC 1 cut(s) 354
FatI CATG 5 cut(s) 132, 264, 329, 600, 873
FauI CCCGC 1 cut(s) 517
FbaI TGATCA 2 cut(s) 129, 603
Fnu4HI GCNGC 1 cut(s) 822
FokI GGATG 2 cut(s) 80, 428
Fsp4HI GCNGC 1 cut(s) 822
FspBI CTAG 3 cut(s) 113, 449, 512
GlaI GCGC 1 cut(s) 504
GluI GCNGC 1 cut(s) 822
GsaI CCCAGC 1 cut(s) 407
GsuI CTGGAG 2 cut(s) 327, 733
HaeIII GGCC 1 cut(s) 77
HhaI GCGC 1 cut(s) 505
Hin1II CATG 5 cut(s) 136, 268, 333, 604, 877
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 6 cut(s) 11, 221, 256, 309, 340, 589
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 4 cut(s) 327, 667, 771, 838
Hpy188I TCNGA 3 cut(s) 211, 498, 613
Hpy188III TCNNGA 6 cut(s) 265, 530, 601, 721, 750, 789
Hpy8I GTNNAC 4 cut(s) 327, 667, 771, 838
HpyAV CCTTC 2 cut(s) 180, 790
HpyCH4III ACNGT 2 cut(s) 547, 745
HpyCH4IV ACGT 3 cut(s) 199, 390, 801
HpyCH4V TGCA 6 cut(s) 251, 364, 419, 731, 817, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 521
HpyF3I CTNAG 1 cut(s) 238
HpySE526I ACGT 3 cut(s) 199, 390, 801
Hsp92II CATG 5 cut(s) 136, 268, 333, 604, 877
HspAI GCGC 1 cut(s) 503
KpnI GGTACC 1 cut(s) 546
Ksp22I TGATCA 2 cut(s) 129, 603
Kzo9I GATC 5 cut(s) 116, 129, 486, 603, 717
Lsp1109I GCAGC 1 cut(s) 808
LweI GCATC 3 cut(s) 215, 406, 524
MaeI CTAG 3 cut(s) 113, 449, 512
MaeII ACGT 3 cut(s) 199, 390, 801
MaeIII GTNAC 3 cut(s) 430, 547, 739
MalI GATC 5 cut(s) 118, 131, 488, 605, 719
MboI GATC 5 cut(s) 116, 129, 486, 603, 717
MboII GAAGA 4 cut(s) 6, 70, 304, 725
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 1 cut(s) 116
MlyI GAGTC 3 cut(s) 250, 318, 583
MnlI CCTC 4 cut(s) 81, 242, 328, 673
Mph1103I ATGCAT 1 cut(s) 253
MseI TTAA 3 cut(s) 350, 438, 675
MslI CAYNNNNRTG 1 cut(s) 662
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 505
MwoI GCNNNNNNNGC 2 cut(s) 212, 521
NdeII GATC 5 cut(s) 116, 129, 486, 603, 717
NlaIII CATG 5 cut(s) 136, 268, 333, 604, 877
NlaIV GGNNCC 3 cut(s) 244, 379, 544
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 662
PagI TCATGA 2 cut(s) 264, 600
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 3 cut(s) 11, 221, 340
Pfl23II CGTACG 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 1 cut(s) 823
PleI GAGTC 3 cut(s) 250, 317, 583
PpsI GAGTC 3 cut(s) 250, 317, 583
Ppu21I YACGTR 1 cut(s) 200
PsiI TTATAA 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 403
PspLI CGTACG 1 cut(s) 200
PspN4I GGNNCC 3 cut(s) 244, 379, 544
PspPI GGNCC 2 cut(s) 68, 892
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 7 cut(s) 156, 187, 202, 509, 544, 668, 839
RsaNI GTAC 7 cut(s) 155, 186, 201, 508, 543, 667, 838
RseI CAYNNNNRTG 1 cut(s) 662
SaqAI TTAA 3 cut(s) 350, 438, 675
SatI GCNGC 1 cut(s) 822
Sau3AI GATC 5 cut(s) 116, 129, 486, 603, 717
Sau96I GGNCC 2 cut(s) 68, 892
SchI GAGTC 3 cut(s) 250, 318, 583
SfaNI GCATC 3 cut(s) 215, 406, 524
SinI GGWCC 2 cut(s) 68, 892
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SsiI CCGC 2 cut(s) 524, 895
SspMI CTAG 3 cut(s) 113, 449, 512
StyI CCWWGG 2 cut(s) 381, 459
TaaI ACNGT 2 cut(s) 547, 745
TaiI ACGT 3 cut(s) 202, 393, 804
TaqI TCGA 5 cut(s) 36, 164, 489, 576, 587
TatI WGTACW 3 cut(s) 185, 666, 837
TfiI GAWTC 3 cut(s) 11, 221, 340
Tru1I TTAA 3 cut(s) 350, 438, 675
Tru9I TTAA 3 cut(s) 350, 438, 675
TscAI CASTG 1 cut(s) 840
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 1 cut(s) 821
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 5 cut(s) 82, 253, 456, 772, 853
TspRI CASTG 1 cut(s) 840
Van91I CCANNNNNTGG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 68, 892
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 6 cut(s) 100, 443, 480, 635, 754, 860
XspI CTAG 3 cut(s) 113, 449, 512
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.