Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0012678

Physical Location & Seq

Genomic Coordinates Reverse (-)

3431156 .. 3431623

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG025600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTCAAGTGATGGAGTTGCCTTCTGCTTGAATTCCGTAGACCTCAACTCGAGCACCAAAGCATTGACTCAATTCATGACTGAGAGTGAGACTATCCCTGAACTTCAACCTGAAACTGGAGTCTTCTCGTTCCAGATCACATGGGAGGAGATTCAGTCCTTAAAACCCCAACTGCAAAGTCCCTATGGAACCAAGGAAAACATGTATAGAAACCCAGCTAACAAGGATGCAGGCAAAGTGGTGACCCTTAATGAATTCCTAGGGTTCGCCAAGGAAAAGGCAACTGGAATTTTGGTCGACATTCAGGTCAACCTTTCAAGACATTTCAGTCTAATTCTCATTGTTGCCCAACAATGTTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

121

Amino Acids

13.44

Weight (kDa)

4.86

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012678)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0317811
rosa_laevigata	RLG00000008297
rosa_multiflora	Rmu_co8382301.1_g000001 Rmu_sc0000654.1_g000044 Rmu_sc0000772.1_g000024 Rmu_sc0000772.1_g000027 Rmu_sc0000772.1_g000042 Rmu_sc0010905.1_g000001
rosa_samantha	Rh1AG029500 Rh1BG025600 Rh1CG027300 Rh1DG042500 Rh1DG043000 Rh1DG043100 Rh1DG043300 Rh1DG043800 Rh4BG172400
rosa_wichuraiana	Rw1G002160 Rw1G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	305, 327
AccI	GTMKAC	2 cut(s)	39, 297
AcsI	RAATTY	3 cut(s)	31, 254, 288
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	31, 107, 318
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	49
ApoI	RAATTY	3 cut(s)	31, 254, 288
AspA2I	CCTAGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	49
AvrII	CCTAGG	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	1 cut(s)	5
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	260
BlnI	CCTAGG	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	192, 259, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	121, 289
BseDI	CCNNGG	3 cut(s)	192, 259, 270
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	121, 289
BseRI	GAGGAG	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	135, 360
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	121, 289
BssECI	CCNNGG	3 cut(s)	192, 259, 270
BssMI	GATC	2 cut(s)	135, 360
BssT1I	CCWWGG	3 cut(s)	192, 259, 270
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	138, 363
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	135, 360
BstNSI	RCATGY	1 cut(s)	205
BstPI	GGTNACC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	232
CciI	TCATGA	1 cut(s)	75
CviAII	CATG	3 cut(s)	76, 141, 202
CviJI	RGCY	1 cut(s)	218
CviKI_1	RGCY	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	137, 362
DpnII	GATC	2 cut(s)	135, 360
DrdI	GACNNNNNNGTC	2 cut(s)	305, 327
DseDI	GACNNNNNNGTC	2 cut(s)	305, 327
Eco130I	CCWWGG	3 cut(s)	192, 259, 270
Eco88I	CYCGRG	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	2 cut(s)	31, 254
EcoT14I	CCWWGG	3 cut(s)	192, 259, 270
ErhI	CCWWGG	3 cut(s)	192, 259, 270
FaeI	CATG	3 cut(s)	79, 144, 205
FaiI	YATR	5 cut(s)	77, 142, 186, 203, 207
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	3 cut(s)	75, 140, 201
FblI	GTMKAC	2 cut(s)	39, 297
FokI	GGATG	1 cut(s)	239
FspBI	CTAG	1 cut(s)	260
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	138
Hin1II	CATG	3 cut(s)	79, 144, 205
HincII	GTYRAC	2 cut(s)	298, 310
HindII	GTYRAC	2 cut(s)	298, 310
HinfI	GANTC	3 cut(s)	67, 120, 151
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	3 cut(s)	40, 298, 310
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	3 cut(s)	76, 133, 318
Hpy8I	GTNNAC	3 cut(s)	40, 298, 310
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	175, 230
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	79, 144, 205
Kzo9I	GATC	2 cut(s)	135, 360
LpnPI	CCDG	8 cut(s)	102, 111, 123, 146, 216, 228, 270, 290
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	137, 362
MboI	GATC	2 cut(s)	135, 360
MboII	GAAGA	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	5 cut(s)	31, 71, 254, 288, 333
MlyI	GAGTC	2 cut(s)	61, 129
MnlI	CCTC	2 cut(s)	53, 139
MseI	TTAA	2 cut(s)	161, 249
NdeII	GATC	2 cut(s)	135, 360
NlaIII	CATG	3 cut(s)	79, 144, 205
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	49
PagI	TCATGA	1 cut(s)	75
PciI	ACATGT	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	151
PleI	GAGTC	2 cut(s)	61, 128
PpsI	GAGTC	2 cut(s)	61, 128
PscI	ACATGT	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	190
PspXI	VCTCGAGB	1 cut(s)	49
SalI	GTCGAC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	161, 249
Sau3AI	GATC	2 cut(s)	135, 360
SchI	GAGTC	2 cut(s)	61, 129
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	5 cut(s)	45, 112, 220, 309, 315
SfaNI	GCATC	1 cut(s)	217
Sfr274I	CTCGAG	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	5 cut(s)	31, 71, 254, 288, 333
SspMI	CTAG	1 cut(s)	260
StyI	CCWWGG	3 cut(s)	192, 259, 270
TaqI	TCGA	2 cut(s)	50, 297
TasI	AATT	5 cut(s)	31, 71, 254, 288, 333
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	161, 249
Tru9I	TTAA	2 cut(s)	161, 249
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	64, 267
TspGWI	ACGGA	1 cut(s)	25
XapI	RAATTY	3 cut(s)	31, 254, 288
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	49
XmaJI	CCTAGG	1 cut(s)	259
XmiI	GTMKAC	2 cut(s)	39, 297
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.