Rmu_sc0000772.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000772.1
OG0012678
Physical Location & Seq
Forward (+)
69954 .. 70493
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000772.1_g000027.1.cds

Sequence Viewer

Length: 318 bp
atgcgatatgtagctggaggtcttatgctttgggcagctagcgtaacctttttggcgtgccagcaccgcagggtgcagtcgttgggggagtcccgtgacctgacttctttttcaagcgctgtggacgaggagagcaccaacctcgttacagggttcttttcttgccttccggaaaaggacttcttgccttacgcgggtaagggctttggttgtggtctctttgcgttcaccaaatcgatactcaacgttggcgttacccttgcttcgctggaagtaacagtagcggttgtgcttgcagtcggctcctggggagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.17

Weight (kDa)

5.22

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 3 cut(s) 67, 194, 284
AclI AACGTT 1 cut(s) 246
AfeI AGCGCT 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 114
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 2 cut(s) 14, 38
AluI AGCT 2 cut(s) 14, 38
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 221, 306
Aor13HI TCCGGA 1 cut(s) 169
Aor51HI AGCGCT 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 221, 306
BfaI CTAG 2 cut(s) 39, 316
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 307
BmtI GCTAGC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 36
Bsa29I ATCGAT 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 1 cut(s) 307
BseCI ATCGAT 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 221, 306
BsmFI GGGAC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 169
BspACI CCGC 3 cut(s) 67, 194, 284
BspDI ATCGAT 1 cut(s) 236
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 304
BspOI GCTAGC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 1 cut(s) 280
BstC8I GCNNGC 4 cut(s) 40, 58, 62, 294
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstMAI GTCTC 2 cut(s) 221, 306
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 47
Bsu15I ATCGAT 1 cut(s) 236
BsuTUI ATCGAT 1 cut(s) 236
Cac8I GCNNGC 4 cut(s) 40, 58, 62, 294
CfoI GCGC 1 cut(s) 119
ClaI ATCGAT 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviJI RGCY 4 cut(s) 14, 38, 204, 303
CviKI_1 RGCY 4 cut(s) 14, 38, 204, 303
Eco31I GGTCTC 1 cut(s) 221
Eco47III AGCGCT 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 305
FaiI YATR 2 cut(s) 9, 26
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 1 cut(s) 76
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 39, 316
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 36
HaeII RGCGCY 1 cut(s) 120
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 124, 228
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 2 cut(s) 124, 228
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 76, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 246
HspAI GCGC 1 cut(s) 117
Kpn2I TCCGGA 1 cut(s) 169
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 7 cut(s) 55, 74, 113, 135, 183, 254, 292
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 2 cut(s) 39, 316
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 5 cut(s) 43, 95, 145, 253, 274
MhlI GDGCHC 1 cut(s) 137
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 3 cut(s) 11, 121, 152
MroI TCCGGA 1 cut(s) 169
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 66
NheI GCTAGC 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp1406I AACGTT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 304
SatI GCNGC 1 cut(s) 36
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 137
SetI ASST 7 cut(s) 16, 22, 40, 50, 102, 144, 249
SsiI CCGC 3 cut(s) 67, 194, 284
SspMI CTAG 2 cut(s) 39, 316
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 236
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 95
XspI CTAG 2 cut(s) 39, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.