RLG00000008297

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012678
Physical Location & Seq
Forward (+)
28501938 .. 28513101
11164 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008297

Sequence Viewer

Length: 915 bp
ATGAATTGCTTCAAGTTTCACTTCAACTTACTTACTGTGTCCGTGGCAAATCCAACTGATCTTGTAAAAGTTGGACTTCAAGCTGAGGGAAAACTACCACCAGGCGCACCAAGAAATGGAGCGAGTGGGAACTATTCTGGTTGCACTGACCTTGCTTATCAGAGAGCAGTAGATGATGGCGCTGATATAATCAATTGCTCGGTCCAAATGTCAAGTGATGGAGTTACCTTCTGCATAGATTCCATAGACCTCAACTCGGGCACCAATGCACTGACTCAATTCATGACCAAGAGTGAGACTATCCCTGAACTTCAACCTGAAGTTGGAGTCTTCTCGTTCAAGATCACATGGGAGGGGAATCAGTCCTTAAAACGAGATGCAGGCAAACTGGTGACCCTTGATGAATTCCTACAGTTAGCCAACGAAAAGGCAACTACTGGAATTTTGATCAACATGCAGCAATCAATTGAAGAGATCAAGAAGTTTGCAGATGCAGTAACTGTCTCCAGAAATTTGGTTATTCCGTCCACCAGTTCCTTCATCTCGGGAGAAACTCACGTCATCAAGGAATTGCAGGCTGCAAATCTTTCAGTACCCCATTACCGAAATTGCTACAAAATGATGGGAGATTACCGAAAGCAGCTAGAGAAAATATTCGTGCTCTTCATCTTTTCTCAGGGACCTTTGGCCTTTTATAAGGTCTTCATCCCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCCTGGAGCAGAGAAAAACAAGTAAGAAACTTGCCTTCCTTCTCTATAGAGATTATGGCCTTCCCAATGCTAGAATTGACGAAGAAAGGAACTTCGCCAGCCACATAAAGCATACCCTCAATAATCATGTCCTCCACTTCTTGTTTTCATCATCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

305

Amino Acids

33.93

Weight (kDa)

7.66

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 40 - 166 1.4e-10 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AccB1I GGYRCC 1 cut(s) 260
AccB7I CCANNNNNTGG 2 cut(s) 116, 716
AclWI GGATC 1 cut(s) 736
AcsI RAATTY 4 cut(s) 404, 441, 511, 712
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 594
AfiI CCNNNNNNNGG 4 cut(s) 116, 256, 323, 716
AgsI TTSAA 6 cut(s) 13, 25, 80, 314, 340, 470
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 2 cut(s) 100, 756
AluBI AGCT 2 cut(s) 83, 643
AluI AGCT 2 cut(s) 83, 643
Alw21I GWGCWC 1 cut(s) 663
Alw26I GTCTC 2 cut(s) 290, 508
AlwI GGATC 1 cut(s) 736
AlwNI CAGNNNCTG 1 cut(s) 500
Ama87I CYCGRG 2 cut(s) 256, 544
AoxI GGCC 2 cut(s) 687, 811
ApeKI GCWGC 3 cut(s) 457, 578, 640
ApoI RAATTY 4 cut(s) 404, 441, 511, 712
Asp700I GAANNNNTTC 2 cut(s) 8, 653
AspLEI GCGC 2 cut(s) 107, 182
AspS9I GGNCC 2 cut(s) 202, 680
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 2 cut(s) 256, 544
AvaII GGWCC 2 cut(s) 202, 680
BaeGI GKGCMC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 322, 694
Bbv12I GWGCWC 1 cut(s) 663
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 469, 565, 652
BccI CCATC 3 cut(s) 170, 212, 616
BceAI ACGGC 1 cut(s) 737
BciT130I CCWGG 2 cut(s) 102, 758
BclI TGATCA 2 cut(s) 447, 741
BcoDI GTCTC 2 cut(s) 290, 508
BfaI CTAG 3 cut(s) 644, 725, 825
BfmI CTRYAG 2 cut(s) 410, 799
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 3 cut(s) 458, 579, 641
BlsI GCNGC 3 cut(s) 459, 580, 642
Bme1390I CCNGG 2 cut(s) 102, 758
Bme18I GGWCC 2 cut(s) 202, 680
BmeT110I CYCGRG 2 cut(s) 256, 544
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 2 cut(s) 202, 680
BmiI GGNNCC 2 cut(s) 262, 681
BmrFI CCNGG 2 cut(s) 102, 758
BmsI GCATC 2 cut(s) 367, 481
BpiI GAAGAC 2 cut(s) 322, 694
BpmI CTGGAG 2 cut(s) 490, 779
Bpu10I CCTNAGC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 42, 756
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 256, 323, 716
Bse1I ACTGG 3 cut(s) 393, 442, 531
BseBI CCWGG 2 cut(s) 102, 758
BseDI CCNNGG 2 cut(s) 42, 756
BseGI GGATG 1 cut(s) 705
BseLI CCNNNNNNNGG 4 cut(s) 116, 256, 323, 716
BseMII CTCAG 2 cut(s) 75, 689
BseNI ACTGG 3 cut(s) 393, 442, 531
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 3 cut(s) 469, 565, 652
BshFI GGCC 2 cut(s) 689, 813
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 663
BsiHKCI CYCGRG 2 cut(s) 256, 544
BslFI GGGAC 1 cut(s) 693
BslI CCNNNNNNNGG 4 cut(s) 116, 256, 323, 716
BsmAI GTCTC 2 cut(s) 290, 508
BsmFI GGGAC 1 cut(s) 693
BsnI GGCC 2 cut(s) 689, 813
BsoBI CYCGRG 2 cut(s) 256, 544
Bsp1286I GDGCHC 2 cut(s) 263, 663
Bsp143I GATC 6 cut(s) 58, 342, 447, 474, 728, 741
BspANI GGCC 2 cut(s) 689, 813
BspCNI CTCAG 2 cut(s) 76, 688
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 262, 681
BspPI GGATC 1 cut(s) 736
BspQI GCTCTTC 1 cut(s) 668
BspT107I GGYRCC 1 cut(s) 260
BsrI ACTGG 3 cut(s) 393, 442, 531
BssECI CCNNGG 2 cut(s) 42, 756
BssMI GATC 6 cut(s) 58, 342, 447, 474, 728, 741
Bst2UI CCWGG 2 cut(s) 102, 758
Bst4CI ACNGT 3 cut(s) 37, 414, 502
Bst6I CTCTTC 2 cut(s) 465, 668
BstC8I GCNNGC 3 cut(s) 382, 576, 853
BstDEI CTNAG 2 cut(s) 84, 675
BstDSI CCRYGG 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 391
BstF5I GGATG 1 cut(s) 705
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 107, 182
BstKTI GATC 6 cut(s) 61, 345, 450, 477, 731, 744
BstMAI GTCTC 2 cut(s) 290, 508
BstMBI GATC 6 cut(s) 58, 342, 447, 474, 728, 741
BstNI CCWGG 2 cut(s) 102, 758
BstNSI RCATGY 1 cut(s) 457
BstPI GGTNACC 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 100, 756
BstSFI CTRYAG 2 cut(s) 410, 799
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 469, 565, 652
BstV2I GAAGAC 2 cut(s) 322, 694
BstX2I RGATCY 1 cut(s) 728
BstXI CCANNNNNNTGG 1 cut(s) 514
BstYI RGATCY 1 cut(s) 728
BsuRI GGCC 2 cut(s) 689, 813
BtgI CCRYGG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 1 cut(s) 705
BtsIMutI CAGTG 2 cut(s) 144, 269
Cac8I GCNNGC 3 cut(s) 382, 576, 853
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 282
CfoI GCGC 2 cut(s) 107, 182
Cfr13I GGNCC 2 cut(s) 202, 680
Csp6I GTAC 1 cut(s) 593
CviAII CATG 5 cut(s) 283, 348, 454, 745, 881
CviJI RGCY 8 cut(s) 83, 419, 578, 643, 689, 724, 813, 855
CviKI_1 RGCY 8 cut(s) 83, 419, 578, 643, 689, 724, 813, 855
CviQI GTAC 1 cut(s) 593
DdeI CTNAG 2 cut(s) 84, 675
DpnI GATC 6 cut(s) 60, 344, 449, 476, 730, 743
DpnII GATC 6 cut(s) 58, 342, 447, 474, 728, 741
Eam1104I CTCTTC 2 cut(s) 465, 668
EarI CTCTTC 2 cut(s) 465, 668
Eco47I GGWCC 2 cut(s) 202, 680
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 256, 544
Eco91I GGTNACC 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 680
EcoO65I GGTNACC 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 100, 756
FaeI CATG 5 cut(s) 286, 351, 457, 748, 884
FalI AAGNNNNNCTT 3 cut(s) 37, 60, 92
FaqI GGGAC 1 cut(s) 693
FatI CATG 5 cut(s) 282, 347, 453, 744, 880
FbaI TGATCA 2 cut(s) 447, 741
Fnu4HI GCNGC 3 cut(s) 458, 579, 641
FokI GGATG 1 cut(s) 692
Fsp4HI GCNGC 3 cut(s) 458, 579, 641
FspBI CTAG 3 cut(s) 644, 725, 825
GlaI GCGC 2 cut(s) 106, 181
GluI GCNGC 3 cut(s) 458, 579, 641
GsuI CTGGAG 2 cut(s) 490, 779
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 689, 813
HhaI GCGC 2 cut(s) 107, 182
Hin1II CATG 5 cut(s) 286, 351, 457, 748, 884
Hin6I GCGC 2 cut(s) 105, 180
HinP1I GCGC 2 cut(s) 105, 180
HinfI GANTC 4 cut(s) 239, 274, 327, 358
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 528
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 5 cut(s) 283, 340, 478, 507, 546
Hpy8I GTNNAC 1 cut(s) 528
HpyAV CCTTC 5 cut(s) 238, 547, 799, 803, 824
HpyCH4III ACNGT 3 cut(s) 37, 414, 502
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 9 cut(s) 144, 234, 269, 380, 457, 488, 494, 574, 581
HpyF3I CTNAG 2 cut(s) 84, 675
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 5 cut(s) 286, 351, 457, 748, 884
HspAI GCGC 2 cut(s) 105, 180
Ksp22I TGATCA 2 cut(s) 447, 741
Kzo9I GATC 6 cut(s) 58, 342, 447, 474, 728, 741
LguI GCTCTTC 1 cut(s) 668
LmnI GCTCC 2 cut(s) 119, 760
Lsp1109I GCAGC 3 cut(s) 469, 565, 652
LweI GCATC 2 cut(s) 367, 481
MaeI CTAG 3 cut(s) 644, 725, 825
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 3 cut(s) 223, 391, 496
MalI GATC 6 cut(s) 60, 344, 449, 476, 730, 743
MboI GATC 6 cut(s) 58, 342, 447, 474, 728, 741
MboII GAAGA 5 cut(s) 322, 482, 655, 694, 848
MfeI CAATTG 2 cut(s) 193, 465
MflI RGATCY 1 cut(s) 728
MhlI GDGCHC 2 cut(s) 263, 663
MlyI GAGTC 2 cut(s) 268, 336
MmeI TCCRAC 3 cut(s) 52, 77, 304
MnlI CCTC 5 cut(s) 79, 260, 346, 881, 896
MroXI GAANNNNTTC 2 cut(s) 8, 653
MseI TTAA 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 102, 758
MunI CAATTG 2 cut(s) 193, 465
MvaI CCWGG 2 cut(s) 102, 758
NdeII GATC 6 cut(s) 58, 342, 447, 474, 728, 741
NlaIII CATG 5 cut(s) 286, 351, 457, 748, 884
NlaIV GGNNCC 2 cut(s) 262, 681
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 457
PagI TCATGA 1 cut(s) 282
PciSI GCTCTTC 1 cut(s) 668
PdmI GAANNNNTTC 2 cut(s) 8, 653
PfeI GAWTC 2 cut(s) 239, 358
PflMI CCANNNNNTGG 2 cut(s) 116, 716
PkrI GCNGC 3 cut(s) 459, 580, 642
PleI GAGTC 2 cut(s) 268, 335
PpsI GAGTC 2 cut(s) 268, 335
PpuMI RGGWCCY 1 cut(s) 680
PsiI TTATAA 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 680
Psp6I CCWGG 2 cut(s) 100, 756
PspEI GGTNACC 1 cut(s) 391
PspGI CCWGG 2 cut(s) 100, 756
PspN4I GGNNCC 2 cut(s) 262, 681
PspPI GGNCC 2 cut(s) 202, 680
PspPPI RGGWCCY 1 cut(s) 680
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 1 cut(s) 728
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
SapI GCTCTTC 1 cut(s) 668
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 3 cut(s) 458, 579, 641
Sau3AI GATC 6 cut(s) 58, 342, 447, 474, 728, 741
Sau96I GGNCC 2 cut(s) 202, 680
SchI GAGTC 2 cut(s) 268, 336
ScrFI CCNGG 2 cut(s) 102, 758
SduI GDGCHC 2 cut(s) 263, 663
SfaNI GCATC 2 cut(s) 367, 481
SfcI CTRYAG 2 cut(s) 410, 799
SinI GGWCC 2 cut(s) 202, 680
SspI AATATT 1 cut(s) 654
SspMI CTAG 3 cut(s) 644, 725, 825
StyD4I CCNGG 2 cut(s) 100, 756
TaaI ACNGT 3 cut(s) 37, 414, 502
TaiI ACGT 1 cut(s) 561
TaqII GACCGA 1 cut(s) 190
TfiI GAWTC 2 cut(s) 239, 358
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 2 cut(s) 151, 276
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 3 cut(s) 457, 578, 640
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 7 cut(s) 17, 271, 417, 529, 655, 694, 891
TspGWI ACGGA 2 cut(s) 31, 513
TspRI CASTG 2 cut(s) 151, 276
Van91I CCANNNNNTGG 2 cut(s) 116, 716
VpaK11BI GGWCC 2 cut(s) 202, 680
XapI RAATTY 4 cut(s) 404, 441, 511, 712
XceI RCATGY 1 cut(s) 457
XmnI GAANNNNTTC 2 cut(s) 8, 653
XspI CTAG 3 cut(s) 644, 725, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.