Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012678

Physical Location & Seq

Genomic Coordinates Reverse (-)

5482575 .. 5483036

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG027300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTTGATCTGAACAATAAATATAACCTATGTTCTCAGAATGCGCTGTACCTAGCATCAAAGGCGGGTCTGGACATTGTTGGTACCGTAACCTCTGCCTTGAAAAATGCCACACTCGACAAGCAATCGACTCAAAAGGTCATGATCAAATCAGATGGCACTTCAGTCTTGTCTAAATTCGCTGATGAGAAAGCATACACAAGGGTGTACAACATTAAGGAGGAAATAGGTGCTACACCAAAGCAATCAATTGAAGAGATCAAGAAGTTTGCAGATGGAGTAACTGTCTCCAGAAATTCGGTTATTCAGTCCACCAGTTCCTTCATCTCGGGAGAAACTCACGTCATCAAGGAATTGCAGGCTGCAAATCTTTCAGTGTACATCAATTACCTGAAAAACAAATTCATCAGTCTCATGTTTGATTATCTCTTGGACCGCATTACCGAAATAGCTACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDPD

Protein Analysis

153

Amino Acids

17.01

Weight (kDa)

8.87

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012678)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0317811
rosa_laevigata	RLG00000008297
rosa_multiflora	Rmu_co8382301.1_g000001 Rmu_sc0000654.1_g000044 Rmu_sc0000772.1_g000024 Rmu_sc0000772.1_g000027 Rmu_sc0000772.1_g000042 Rmu_sc0010905.1_g000001
rosa_samantha	Rh1AG029500 Rh1BG025600 Rh1CG027300 Rh1DG042500 Rh1DG043000 Rh1DG043100 Rh1DG043300 Rh1DG043800 Rh4BG172400
rosa_wichuraiana	Rw1G002160 Rw1G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	83
AciI	CCGC	2 cut(s)	65, 436
AcsI	RAATTY	3 cut(s)	176, 295, 401
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	4 cut(s)	50, 85, 209, 380
AgsI	TTSAA	2 cut(s)	103, 254
AjiI	CACGTC	1 cut(s)	343
AleI	CACNNNNGTG	1 cut(s)	203
AluBI	AGCT	1 cut(s)	452
AluI	AGCT	1 cut(s)	452
Alw26I	GTCTC	2 cut(s)	292, 416
Ama87I	CYCGRG	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	3 cut(s)	176, 295, 401
Asp718I	GGTACC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	2 cut(s)	149, 269
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	292, 416
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bse1I	ACTGG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	349
BshNI	GGYRCC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	292, 416
BsmI	GAATGC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	328
Bsp1407I	TGTACA	2 cut(s)	207, 378
Bsp143I	GATC	3 cut(s)	7, 144, 258
BspACI	CCGC	2 cut(s)	65, 436
BspCNI	CTCAG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	83
BsrGI	TGTACA	2 cut(s)	207, 378
BsrI	ACTGG	1 cut(s)	315
BssMI	GATC	3 cut(s)	7, 144, 258
Bst4CI	ACNGT	2 cut(s)	88, 286
Bst6I	CTCTTC	1 cut(s)	249
BstAUI	TGTACA	2 cut(s)	207, 378
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	10, 147, 261
BstMAI	GTCTC	2 cut(s)	292, 416
BstMBI	GATC	3 cut(s)	7, 144, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	349
BtrI	CACGTC	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	360
CciI	TCATGA	1 cut(s)	141
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	433
Csp6I	GTAC	4 cut(s)	49, 84, 208, 379
CviAII	CATG	2 cut(s)	142, 415
CviJI	RGCY	2 cut(s)	362, 452
CviKI_1	RGCY	2 cut(s)	362, 452
CviQI	GTAC	4 cut(s)	49, 84, 208, 379
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	3 cut(s)	9, 146, 260
DpnII	GATC	3 cut(s)	7, 144, 258
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	328
FaeI	CATG	2 cut(s)	145, 418
FaiI	YATR	5 cut(s)	24, 31, 143, 196, 416
FatI	CATG	2 cut(s)	141, 414
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	274
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	145, 418
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	130
Hpy166II	GTNNAC	3 cut(s)	208, 312, 379
Hpy188I	TCNGA	3 cut(s)	12, 39, 154
Hpy188III	TCNNGA	5 cut(s)	71, 142, 262, 291, 330
Hpy8I	GTNNAC	3 cut(s)	208, 312, 379
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	88, 286
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	272, 358, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	145, 418
HspAI	GCGC	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	7, 144, 258
LpnPI	CCDG	5 cut(s)	56, 304, 328, 344, 404
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	88, 280
MalI	GATC	3 cut(s)	9, 146, 260
MboI	GATC	3 cut(s)	7, 144, 258
MboII	GAAGA	1 cut(s)	266
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	6 cut(s)	176, 249, 295, 353, 385, 401
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	2 cut(s)	103, 214
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	3 cut(s)	7, 144, 258
NlaIII	CATG	2 cut(s)	145, 418
NlaIV	GGNNCC	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	141
PctI	GAATGC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	433
RsaI	GTAC	4 cut(s)	50, 85, 209, 380
RsaNI	GTAC	4 cut(s)	49, 84, 208, 379
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	3 cut(s)	7, 144, 258
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	124
SetI	ASST	8 cut(s)	30, 54, 95, 141, 232, 345, 393, 454
SfaNI	GCATC	1 cut(s)	65
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	6 cut(s)	176, 249, 295, 353, 385, 401
SsiI	CCGC	2 cut(s)	65, 436
SspMI	CTAG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	88, 286
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	117, 128
TasI	AATT	6 cut(s)	176, 249, 295, 353, 385, 401
TatI	WGTACW	2 cut(s)	207, 378
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	2 cut(s)	313, 394
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	3 cut(s)	176, 295, 401
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.