Rh1DG043300

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012678
Physical Location & Seq
Forward (+)
6890795 .. 6892229
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG043300.1

Sequence Viewer

Length: 1035 bp
ATGCAACAGCAGATCCAACAGTTCGTAGATAATTCTGATCAGTTTTCTGTTGACGGGGTGGTTACAGATTTCCCACCTACGGCATCAGAAGCCATTGGTGAGACACTAGGCTTCTTATTTCTAGTAGCACTTGCATCACCATGCTTTTCACATAACAAGGATGGCAAGCCTTACAAAGGGAGTCCATTGATCATAAGTAGAAATGGAGCGAGTGGGAACTATCCTGGTTGCACTGACCTGGCTTATCAGAGAGCAGTAGATGATGGCGCTGATATAATCGATTGCTCGGTCCGAATGTCAAGTGATGGAGTTGCCTTCTACTTGAATTCCGTAGACCTCAACTCGAGCACCAAAGCATTGACTCAATTCATGACTGAGAGTGAGACTATCGCAGAACTTCAACCTGAAACTGGAGTCTTCTCGTTCCAGATCACATGGGAGGAGATTCAGTCCTTAAAACCCCAACTGCAAAGTCCCTATGGAACCAAGGAAAACATGTATAGAAACCCAGCTAACAAGGATGCAGGCAAAGTGGTGACCCTTAATGAATTCCTAGGGTTCGCCAAGGAAAAGGCAACTGGAATTTTGGTCGACATTCAGAGTGCGCCGTACCTAGCATTTAAGGCAGACATTGTTGGTACCGTAACCTCTGCCTTGAAAAATGCCACACTTGACAAGCAATCGACTCAAAAGGTCATGATCAAATCAGATGACACTTCAGTCCTGTCTAAATTCGCTGATGAGAAAACATACACAAGGGTGTACAACATTGAGGAGGAAATAGGCATTGAGGAGGAAATAGGTGCTACACCAAAGCAATCAATTGTAGAGATCAAGAAGTTTGCAGATGCTGTAACTGTCTCCAGAAATTCGATTATTCAGTCCACCAGTTCCTTCATCTCGGGAGAAACTCACATCATCAAGGAATTGCAGGCTGCAAATCTTTCAGTGTGCATCAATTATCTGAAAAACGAATTCCTCAGTCTCATGTTTGATTATCTCTCTGACTCCATTACCGAAATAGCTACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

344

Amino Acids

37.68

Weight (kDa)

4.62

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 69 - 317 2.1e-16 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 719
Acc65I GGTACC 1 cut(s) 638
AccB1I GGYRCC 1 cut(s) 638
AccI GTMKAC 2 cut(s) 333, 591
AclWI GGATC 1 cut(s) 7
AcsI RAATTY 6 cut(s) 325, 548, 582, 731, 868, 974
AcuI CTGAAG 1 cut(s) 702
AfaI GTAC 3 cut(s) 611, 640, 764
AfiI CCNNNNNNNGG 3 cut(s) 79, 176, 410
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 3 cut(s) 325, 401, 658
AjnI CCWGG 2 cut(s) 223, 237
AleI CACNNNNGTG 1 cut(s) 758
AluBI AGCT 2 cut(s) 512, 1025
AluI AGCT 2 cut(s) 512, 1025
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 4 cut(s) 95, 377, 865, 989
AlwI GGATC 1 cut(s) 7
AlwNI CAGNNNCTG 1 cut(s) 851
Ama87I CYCGRG 2 cut(s) 343, 901
ApeKI GCWGC 1 cut(s) 935
ApoI RAATTY 6 cut(s) 325, 548, 582, 731, 868, 974
Asp718I GGTACC 1 cut(s) 638
AspA2I CCTAGG 1 cut(s) 553
AspLEI GCGC 2 cut(s) 269, 607
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 3 cut(s) 110, 129, 547
AvaI CYCGRG 2 cut(s) 343, 901
AvaII GGWCC 1 cut(s) 289
AvrII CCTAGG 1 cut(s) 553
BanI GGYRCC 1 cut(s) 638
BbsI GAAGAC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 922
BccI CCATC 3 cut(s) 155, 257, 299
BceAI ACGGC 2 cut(s) 96, 592
BciT130I CCWGG 2 cut(s) 225, 239
BclI TGATCA 3 cut(s) 37, 189, 699
BcoDI GTCTC 4 cut(s) 95, 377, 865, 989
BfaI CTAG 4 cut(s) 107, 122, 554, 614
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 1 cut(s) 936
BlnI CCTAGG 1 cut(s) 553
BlsI GCNGC 1 cut(s) 937
Bme1390I CCNGG 2 cut(s) 225, 239
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 2 cut(s) 343, 901
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 484, 640
BmrFI CCNGG 2 cut(s) 225, 239
BmsI GCATC 5 cut(s) 92, 143, 511, 838, 963
BpiI GAAGAC 1 cut(s) 409
BpmI CTGGAG 2 cut(s) 432, 847
Bsa29I ATCGAT 1 cut(s) 279
BsaJI CCNNGG 3 cut(s) 486, 553, 564
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 176, 410
Bse1I ACTGG 3 cut(s) 415, 583, 888
BseBI CCWGG 2 cut(s) 225, 239
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 486, 553, 564
BseGI GGATG 2 cut(s) 166, 526
BseLI CCNNNNNNNGG 3 cut(s) 79, 176, 410
BseMII CTCAG 2 cut(s) 366, 994
BseNI ACTGG 3 cut(s) 415, 583, 888
BseRI GAGGAG 3 cut(s) 455, 788, 806
BseXI GCAGC 1 cut(s) 922
BseYI CCCAGC 1 cut(s) 508
BshNI GGYRCC 1 cut(s) 638
BshVI ATCGAT 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 350
BsiHKCI CYCGRG 2 cut(s) 343, 901
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 3 cut(s) 79, 176, 410
BsmAI GTCTC 4 cut(s) 95, 377, 865, 989
BsmFI GGGAC 1 cut(s) 459
BsoBI CYCGRG 2 cut(s) 343, 901
Bsp1286I GDGCHC 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 762
Bsp143I GATC 6 cut(s) 12, 37, 189, 429, 699, 831
BspCNI CTCAG 2 cut(s) 367, 993
BspDI ATCGAT 1 cut(s) 279
BspHI TCATGA 2 cut(s) 369, 696
BspLI GGNNCC 2 cut(s) 484, 640
BspPI GGATC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 638
BsrGI TGTACA 1 cut(s) 762
BsrI ACTGG 3 cut(s) 415, 583, 888
BssECI CCNNGG 3 cut(s) 486, 553, 564
BssMI GATC 6 cut(s) 12, 37, 189, 429, 699, 831
BssT1I CCWWGG 3 cut(s) 486, 553, 564
Bst2UI CCWGG 2 cut(s) 225, 239
Bst4CI ACNGT 3 cut(s) 21, 643, 859
BstAUI TGTACA 1 cut(s) 762
BstC8I GCNNGC 3 cut(s) 167, 526, 933
BstDEI CTNAG 2 cut(s) 375, 980
BstEII GGTNACC 1 cut(s) 535
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 166, 526
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 269, 607
BstKTI GATC 6 cut(s) 15, 40, 192, 432, 702, 834
BstMAI GTCTC 4 cut(s) 95, 377, 865, 989
BstMBI GATC 6 cut(s) 12, 37, 189, 429, 699, 831
BstMWI GCNNNNNNNGC 2 cut(s) 89, 623
BstNI CCWGG 2 cut(s) 225, 239
BstNSI RCATGY 1 cut(s) 499
BstPI GGTNACC 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 223, 237
BstV1I GCAGC 1 cut(s) 922
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 279
BtsCI GGATG 2 cut(s) 166, 526
BtsIMutI CAGTG 2 cut(s) 231, 954
Cac8I GCNNGC 3 cut(s) 167, 526, 933
CaiI CAGNNNCTG 1 cut(s) 851
CciI TCATGA 2 cut(s) 369, 696
CfoI GCGC 2 cut(s) 269, 607
Cfr13I GGNCC 1 cut(s) 289
ClaI ATCGAT 1 cut(s) 279
CpoI CGGWCCG 1 cut(s) 289
Csp6I GTAC 3 cut(s) 610, 639, 763
CspI CGGWCCG 1 cut(s) 289
CviAII CATG 6 cut(s) 141, 370, 435, 496, 697, 988
CviJI RGCY 7 cut(s) 92, 111, 169, 242, 512, 935, 1025
CviKI_1 RGCY 7 cut(s) 92, 111, 169, 242, 512, 935, 1025
CviQI GTAC 3 cut(s) 610, 639, 763
DdeI CTNAG 2 cut(s) 375, 980
DpnI GATC 6 cut(s) 14, 39, 191, 431, 701, 833
DpnII GATC 6 cut(s) 12, 37, 189, 429, 699, 831
DrdI GACNNNNNNGTC 1 cut(s) 719
DseDI GACNNNNNNGTC 1 cut(s) 719
Eco130I CCWWGG 3 cut(s) 486, 553, 564
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 702
Eco88I CYCGRG 2 cut(s) 343, 901
Eco91I GGTNACC 1 cut(s) 535
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoO65I GGTNACC 1 cut(s) 535
EcoRI GAATTC 3 cut(s) 325, 548, 974
EcoRII CCWGG 2 cut(s) 223, 237
EcoT14I CCWWGG 3 cut(s) 486, 553, 564
ErhI CCWWGG 3 cut(s) 486, 553, 564
FaeI CATG 6 cut(s) 144, 373, 438, 499, 700, 991
FaqI GGGAC 1 cut(s) 459
FatI CATG 6 cut(s) 140, 369, 434, 495, 696, 987
FbaI TGATCA 3 cut(s) 37, 189, 699
FblI GTMKAC 2 cut(s) 333, 591
Fnu4HI GCNGC 1 cut(s) 936
FokI GGATG 2 cut(s) 173, 533
Fsp4HI GCNGC 1 cut(s) 936
FspBI CTAG 4 cut(s) 107, 122, 554, 614
GlaI GCGC 2 cut(s) 268, 606
GluI GCNGC 1 cut(s) 936
GsaI CCCAGC 1 cut(s) 512
GsuI CTGGAG 2 cut(s) 432, 847
HaeII RGCGCY 1 cut(s) 270
HhaI GCGC 2 cut(s) 269, 607
Hin1II CATG 6 cut(s) 144, 373, 438, 499, 700, 991
Hin6I GCGC 2 cut(s) 267, 605
HinP1I GCGC 2 cut(s) 267, 605
HincII GTYRAC 2 cut(s) 52, 592
HindII GTYRAC 2 cut(s) 52, 592
HinfI GANTC 6 cut(s) 181, 361, 414, 445, 685, 1007
HphI GGTGA 3 cut(s) 110, 129, 547
Hpy166II GTNNAC 5 cut(s) 52, 334, 592, 763, 885
Hpy188I TCNGA 8 cut(s) 37, 88, 249, 293, 600, 709, 966, 1006
Hpy188III TCNNGA 6 cut(s) 370, 427, 697, 835, 864, 903
Hpy8I GTNNAC 5 cut(s) 52, 334, 592, 763, 885
HpyAV CCTTC 2 cut(s) 325, 904
HpyCH4III ACNGT 3 cut(s) 21, 643, 859
HpyCH4V TGCA 9 cut(s) 4, 134, 231, 469, 524, 845, 931, 938, 954
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 623
HpyF3I CTNAG 2 cut(s) 375, 980
Hsp92II CATG 6 cut(s) 144, 373, 438, 499, 700, 991
HspAI GCGC 2 cut(s) 267, 605
KpnI GGTACC 1 cut(s) 642
Ksp22I TGATCA 3 cut(s) 37, 189, 699
Kzo9I GATC 6 cut(s) 12, 37, 189, 429, 699, 831
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 1 cut(s) 922
LweI GCATC 5 cut(s) 92, 143, 511, 838, 963
MaeI CTAG 4 cut(s) 107, 122, 554, 614
MaeIII GTNAC 4 cut(s) 61, 535, 643, 853
MalI GATC 6 cut(s) 14, 39, 191, 431, 701, 833
MboI GATC 6 cut(s) 12, 37, 189, 429, 699, 831
MboII GAAGA 1 cut(s) 409
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 350
MlyI GAGTC 5 cut(s) 190, 355, 423, 679, 1001
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 8 cut(s) 347, 433, 658, 766, 769, 784, 787, 989
MseI TTAA 3 cut(s) 455, 543, 621
MslI CAYNNNNRTG 2 cut(s) 139, 758
MspR9I CCNGG 2 cut(s) 225, 239
MunI CAATTG 1 cut(s) 822
MvaI CCWGG 2 cut(s) 225, 239
MwoI GCNNNNNNNGC 2 cut(s) 89, 623
NdeII GATC 6 cut(s) 12, 37, 189, 429, 699, 831
NlaIII CATG 6 cut(s) 144, 373, 438, 499, 700, 991
NlaIV GGNNCC 2 cut(s) 484, 640
NmuCI GTSAC 1 cut(s) 535
NspI RCATGY 1 cut(s) 499
OliI CACNNNNGTG 1 cut(s) 758
PaeR7I CTCGAG 1 cut(s) 343
PagI TCATGA 2 cut(s) 369, 696
PciI ACATGT 1 cut(s) 495
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 1 cut(s) 937
PleI GAGTC 5 cut(s) 189, 355, 422, 679, 1001
PpsI GAGTC 5 cut(s) 189, 355, 422, 679, 1001
PscI ACATGT 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 223, 237
PspEI GGTNACC 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 508
PspGI CCWGG 2 cut(s) 223, 237
PspN4I GGNNCC 2 cut(s) 484, 640
PspPI GGNCC 1 cut(s) 289
PspXI VCTCGAGB 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 3 cut(s) 611, 640, 764
RsaNI GTAC 3 cut(s) 610, 639, 763
RseI CAYNNNNRTG 2 cut(s) 139, 758
Rsr2I CGGWCCG 1 cut(s) 289
RsrII CGGWCCG 1 cut(s) 289
SalI GTCGAC 1 cut(s) 590
SaqAI TTAA 3 cut(s) 455, 543, 621
SatI GCNGC 1 cut(s) 936
Sau3AI GATC 6 cut(s) 12, 37, 189, 429, 699, 831
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 5 cut(s) 190, 355, 423, 679, 1001
ScrFI CCNGG 2 cut(s) 225, 239
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 5 cut(s) 92, 143, 511, 838, 963
Sfr274I CTCGAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 2 cut(s) 139, 758
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
SspMI CTAG 4 cut(s) 107, 122, 554, 614
StyD4I CCNGG 2 cut(s) 223, 237
StyI CCWWGG 3 cut(s) 486, 553, 564
TaaI ACNGT 3 cut(s) 21, 643, 859
TaqI TCGA 5 cut(s) 279, 344, 591, 683, 872
TaqII GACCGA 1 cut(s) 277
TatI WGTACW 1 cut(s) 762
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 3 cut(s) 455, 543, 621
Tru9I TTAA 3 cut(s) 455, 543, 621
TscAI CASTG 2 cut(s) 238, 954
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 1 cut(s) 935
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 3 cut(s) 358, 561, 886
TspGWI ACGGA 1 cut(s) 319
TspRI CASTG 2 cut(s) 238, 954
VpaK11BI GGWCC 1 cut(s) 289
XagI CCTNNNNNAGG 1 cut(s) 174
XapI RAATTY 6 cut(s) 325, 548, 582, 731, 868, 974
XceI RCATGY 1 cut(s) 499
XhoI CTCGAG 1 cut(s) 343
XmaJI CCTAGG 1 cut(s) 553
XmiI GTMKAC 2 cut(s) 333, 591
XspI CTAG 4 cut(s) 107, 122, 554, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.