Rmu_sc0010905.1_g000001

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010905.1
OG0012678
Physical Location & Seq
Forward (+)
1 .. 2331
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010905.1_g000001.1.cds

Sequence Viewer

Length: 1002 bp
ggacctctggccttttataagggcttcatcccaaattttggacggctaggatcttggaatgtgatcatgtttctaacccttgagcagcatgcttttcacataacaaggatggcaagccttacaggcaaagggagtccaccgatcataaatagaaatggagcgactgggaactgtcctggttgcactaacgtttcttatcagagagcagtagatgatggcgctgatataatcgattccatagacctcaactcaggcaccaatgcattgactcaattcatgaccaagagtgagactatccctgaacttcaacctgaagctggagtcttctcgttccagttcacatgggaggagattcagtccttaaaaacccaactgcaaagtccctatggaaccaaggaaaacgtgtatagaaacccagctaacaaggatgcaggcaaaactcctagagtttgccaaggaaaaggcaactactggaattttgatcgacattcaggtaaacctttcaagacatgtcagtctaattctccttgttgcacaacaatgtttgatctgaacaataaatataacctatgttctcagaatgcgctggacctagcatcaaaggcgggtctggacattgttggtaccgtaatctctgcctcgaaaaatgccacactcgacaagcaatcgactcaaaaggtcatgatcaaatcagatggcacttcagtcttgtctaaattcgctgatgagaaagcatacactagggtgtacaacattaaggaggaaataggtgctacaccaaagcaatcaattgaagagatcaagaagtttgcagatggagtaactgtctccagaaattcggttattcagtccaccagttccttcatctcgggagaaactcacgtcatcaaggaattgcaggctacaaatctttcagtgtacatcaattacctgaaaaatgaattcatcagtctcatgtttgattatctcttggaccgcattaccgaaatagctacaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

333

Amino Acids

36.81

Weight (kDa)

8.37

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
AasI GACNNNNNNGTC 1 cut(s) 514
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 2 cut(s) 254, 623
AccB7I CCANNNNNTGG 1 cut(s) 38
AciI CCGC 2 cut(s) 605, 976
AclI AACGTT 1 cut(s) 189
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 5 cut(s) 34, 475, 716, 835, 941
AcuI CTGAAG 2 cut(s) 333, 687
AfaI GTAC 3 cut(s) 625, 749, 920
AfiI CCNNNNNNNGG 2 cut(s) 38, 317
AflIII ACRYGT 2 cut(s) 402, 509
AgsI TTSAA 3 cut(s) 308, 505, 794
AjiI CACGTC 1 cut(s) 883
AjnI CCWGG 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 743
AluBI AGCT 3 cut(s) 317, 419, 992
AluI AGCT 3 cut(s) 317, 419, 992
Alw26I GTCTC 3 cut(s) 284, 832, 956
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 868
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 5 cut(s) 34, 475, 716, 835, 941
Asp718I GGTACC 1 cut(s) 623
AspLEI GCGC 2 cut(s) 221, 586
AspS9I GGNCC 3 cut(s) 2, 589, 973
AvaI CYCGRG 1 cut(s) 868
AvaII GGWCC 3 cut(s) 2, 589, 973
BanI GGYRCC 2 cut(s) 254, 623
BbsI GAAGAC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 97
BccI CCATC 4 cut(s) 103, 209, 689, 809
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 2 cut(s) 63, 684
BcoDI GTCTC 3 cut(s) 284, 832, 956
BfaI CTAG 4 cut(s) 47, 444, 593, 741
BfoI RGCGCY 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 3 cut(s) 2, 589, 973
BmeT110I CYCGRG 1 cut(s) 868
BmgBI CACGTC 1 cut(s) 883
BmgT120I GGNCC 3 cut(s) 2, 589, 973
BmiI GGNNCC 3 cut(s) 256, 391, 625
BmrFI CCNGG 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 418, 605
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 316
BpmI CTGGAG 2 cut(s) 339, 814
BpuEI CTTGAG 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 393, 454
BsaXI ACNNNNNCTCC 4 cut(s) 341, 371, 810, 840
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 317
Bse1I ACTGG 4 cut(s) 169, 334, 476, 855
BseBI CCWGG 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 393, 454
BseGI GGATG 3 cut(s) 27, 114, 433
BseLI CCNNNNNNNGG 2 cut(s) 38, 317
BseMII CTCAG 2 cut(s) 264, 590
BseNI ACTGG 4 cut(s) 169, 334, 476, 855
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 1 cut(s) 97
BseYI CCCAGC 1 cut(s) 415
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 2 cut(s) 254, 623
BshVI ATCGAT 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 868
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 38, 317
BsmAI GTCTC 3 cut(s) 284, 832, 956
BsmFI GGGAC 1 cut(s) 366
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 868
Bsp1407I TGTACA 2 cut(s) 747, 918
Bsp143I GATC 7 cut(s) 50, 63, 141, 481, 547, 684, 798
BspACI CCGC 2 cut(s) 605, 976
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 263, 589
BspDI ATCGAT 1 cut(s) 231
BspHI TCATGA 2 cut(s) 276, 681
BspLI GGNNCC 3 cut(s) 256, 391, 625
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 2 cut(s) 254, 623
BsrGI TGTACA 2 cut(s) 747, 918
BsrI ACTGG 4 cut(s) 169, 334, 476, 855
BssECI CCNNGG 2 cut(s) 393, 454
BssMI GATC 7 cut(s) 50, 63, 141, 481, 547, 684, 798
BssT1I CCWWGG 2 cut(s) 393, 454
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 3 cut(s) 173, 628, 826
Bst6I CTCTTC 1 cut(s) 789
BstAUI TGTACA 2 cut(s) 747, 918
BstC8I GCNNGC 4 cut(s) 90, 115, 433, 900
BstDEI CTNAG 2 cut(s) 250, 576
BstF5I GGATG 3 cut(s) 27, 114, 433
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 221, 586
BstKTI GATC 7 cut(s) 53, 66, 144, 484, 550, 687, 801
BstMAI GTCTC 3 cut(s) 284, 832, 956
BstMBI GATC 7 cut(s) 50, 63, 141, 481, 547, 684, 798
BstMWI GCNNNNNNNGC 2 cut(s) 123, 602
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 2 cut(s) 92, 513
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 231
BsuRI GGCC 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 231
BtrI CACGTC 1 cut(s) 883
BtsCI GGATG 3 cut(s) 27, 114, 433
BtsIMutI CAGTG 1 cut(s) 921
Cac8I GCNNGC 4 cut(s) 90, 115, 433, 900
CciI TCATGA 2 cut(s) 276, 681
CfoI GCGC 2 cut(s) 221, 586
Cfr13I GGNCC 3 cut(s) 2, 589, 973
ClaI ATCGAT 1 cut(s) 231
Csp6I GTAC 3 cut(s) 624, 748, 919
CviAII CATG 7 cut(s) 67, 89, 277, 342, 510, 682, 955
CviJI RGCY 8 cut(s) 11, 24, 46, 117, 317, 419, 902, 992
CviKI_1 RGCY 8 cut(s) 11, 24, 46, 117, 317, 419, 902, 992
CviQI GTAC 3 cut(s) 624, 748, 919
DdeI CTNAG 2 cut(s) 250, 576
DpnI GATC 7 cut(s) 52, 65, 143, 483, 549, 686, 800
DpnII GATC 7 cut(s) 50, 63, 141, 481, 547, 684, 798
DrdI GACNNNNNNGTC 1 cut(s) 514
DseDI GACNNNNNNGTC 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
Eco130I CCWWGG 2 cut(s) 393, 454
Eco47I GGWCC 3 cut(s) 2, 589, 973
Eco57I CTGAAG 2 cut(s) 333, 687
Eco88I CYCGRG 1 cut(s) 868
EcoRI GAATTC 1 cut(s) 941
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 393, 454
EcoT22I ATGCAT 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 393, 454
FaeI CATG 7 cut(s) 70, 92, 280, 345, 513, 685, 958
FaqI GGGAC 1 cut(s) 366
FatI CATG 7 cut(s) 66, 88, 276, 341, 509, 681, 954
FauI CCCGC 1 cut(s) 598
FbaI TGATCA 2 cut(s) 63, 684
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 3 cut(s) 14, 121, 440
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 4 cut(s) 47, 444, 593, 741
GlaI GCGC 2 cut(s) 220, 585
GluI GCNGC 1 cut(s) 86
GsaI CCCAGC 1 cut(s) 419
GsuI CTGGAG 2 cut(s) 339, 814
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 1 cut(s) 11
HhaI GCGC 2 cut(s) 221, 586
Hin1II CATG 7 cut(s) 70, 92, 280, 345, 513, 685, 958
Hin6I GCGC 2 cut(s) 219, 584
HinP1I GCGC 2 cut(s) 219, 584
HinfI GANTC 6 cut(s) 133, 233, 268, 321, 352, 670
Hpy166II GTNNAC 6 cut(s) 137, 339, 497, 748, 852, 919
Hpy188I TCNGA 4 cut(s) 201, 552, 579, 694
Hpy188III TCNNGA 7 cut(s) 277, 505, 611, 682, 802, 831, 870
Hpy8I GTNNAC 6 cut(s) 137, 339, 497, 748, 852, 919
HpyAV CCTTC 1 cut(s) 871
HpyCH4III ACNGT 3 cut(s) 173, 628, 826
HpyCH4IV ACGT 3 cut(s) 189, 402, 882
HpyCH4V TGCA 7 cut(s) 183, 263, 376, 431, 534, 812, 898
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 602
HpyF3I CTNAG 2 cut(s) 250, 576
HpySE526I ACGT 3 cut(s) 189, 402, 882
Hsp92II CATG 7 cut(s) 70, 92, 280, 345, 513, 685, 958
HspAI GCGC 2 cut(s) 219, 584
KpnI GGTACC 1 cut(s) 627
Ksp22I TGATCA 2 cut(s) 63, 684
Kzo9I GATC 7 cut(s) 50, 63, 141, 481, 547, 684, 798
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 418, 605
MaeI CTAG 4 cut(s) 47, 444, 593, 741
MaeII ACGT 3 cut(s) 189, 402, 882
MaeIII GTNAC 1 cut(s) 820
MalI GATC 7 cut(s) 52, 65, 143, 483, 549, 686, 800
MboI GATC 7 cut(s) 50, 63, 141, 481, 547, 684, 798
MboII GAAGA 2 cut(s) 316, 806
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 1 cut(s) 50
MlyI GAGTC 4 cut(s) 142, 262, 330, 664
MnlI CCTC 5 cut(s) 15, 254, 340, 649, 754
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 2 cut(s) 362, 756
MslI CAYNNNNRTG 2 cut(s) 539, 743
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 123, 602
NdeII GATC 7 cut(s) 50, 63, 141, 481, 547, 684, 798
NlaIII CATG 7 cut(s) 70, 92, 280, 345, 513, 685, 958
NlaIV GGNNCC 3 cut(s) 256, 391, 625
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 2 cut(s) 92, 513
OliI CACNNNNGTG 1 cut(s) 743
PaeI GCATGC 1 cut(s) 92
PagI TCATGA 2 cut(s) 276, 681
PciI ACATGT 1 cut(s) 509
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 233, 352
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 4 cut(s) 141, 262, 329, 664
PpsI GAGTC 4 cut(s) 141, 262, 329, 664
PscI ACATGT 1 cut(s) 509
PsiI TTATAA 1 cut(s) 18
Psp1406I AACGTT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 415
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 3 cut(s) 256, 391, 625
PspPI GGNCC 3 cut(s) 2, 589, 973
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 3 cut(s) 625, 749, 920
RsaNI GTAC 3 cut(s) 624, 748, 919
RseI CAYNNNNRTG 2 cut(s) 539, 743
SaqAI TTAA 2 cut(s) 362, 756
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 7 cut(s) 50, 63, 141, 481, 547, 684, 798
Sau96I GGNCC 3 cut(s) 2, 589, 973
SchI GAGTC 4 cut(s) 142, 262, 330, 664
ScrFI CCNGG 1 cut(s) 177
SfaNI GCATC 2 cut(s) 418, 605
SinI GGWCC 3 cut(s) 2, 589, 973
SmiMI CAYNNNNRTG 2 cut(s) 539, 743
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SphI GCATGC 1 cut(s) 92
SsiI CCGC 2 cut(s) 605, 976
SspMI CTAG 4 cut(s) 47, 444, 593, 741
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 2 cut(s) 393, 454
TaaI ACNGT 3 cut(s) 173, 628, 826
TaiI ACGT 3 cut(s) 192, 405, 885
TaqI TCGA 5 cut(s) 231, 484, 641, 657, 668
TatI WGTACW 2 cut(s) 747, 918
TfiI GAWTC 2 cut(s) 233, 352
Tru1I TTAA 2 cut(s) 362, 756
Tru9I TTAA 2 cut(s) 362, 756
TscAI CASTG 1 cut(s) 921
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 5 cut(s) 16, 265, 853, 934, 954
TspRI CASTG 1 cut(s) 921
Van91I CCANNNNNTGG 1 cut(s) 38
VpaK11BI GGWCC 3 cut(s) 2, 589, 973
XapI RAATTY 5 cut(s) 34, 475, 716, 835, 941
XceI RCATGY 2 cut(s) 92, 513
XspI CTAG 4 cut(s) 47, 444, 593, 741
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.