Rh4BG172400

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012678
Physical Location & Seq
Reverse (-)
30835122 .. 30839209
4088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG172400.1

Sequence Viewer

Length: 1044 bp
ATGTTCAAGCATGAAGATCTTTGCCTTCAGATTAAGACCTTATATGTGGGCAATGACTTCATTGGAGATGTTCCTTTAACAAAGAAAATTATTGCTGCATTAACTACAGGTGCTCTAGCAATCACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCAAGCTGAGGGAAAACTACCACCAGGCGCACCAAGGCACTATTCTGGCGCACTAAATGCGTATTCCACCATTTTGAGACAGGAGGGAGTTGGGGATCTCTGGACTGGAATTGGACCTAACATTGCCCGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGGGACCTTTGGCCTTTTATAAGGGCTTCATCCCAAATTCATATACCCTATTACCTCAAATAATTATTTGTAATGTTTCTGCTCTAACGCCTCATGCTTTCCTGCTGCAGCATGCTTTTCACATAACAAGGATGGCAAGCCTTACAAAGAGAGCAGTAGATGATGGCGCTGATATAATTGATTGCTCGGTCCAAATGTCAAGTGATGGAGTTACCTTCTGCTTAGATTCCATAGACCTCAACTCGGGCACCAATGCACTGACTCAATTCATGACCAAGAGTGAGACTATCCCTGAACTTCAACCTGAAGTTGGAGTCTTCTCGTTCCAGCTCACATGGGAGGAGACTCAGTCCTTAAAACCTCAACTGCAAAGTCCTTACAGAACCAAGGAAAACGTGTATAGAAACCCAGCTAACAAGGATGCAGGCAAACTGGTGACCCTTGATGAATTCCTAGAGTTAGCCAAGGAAAAGGCAACTACTGGAATTTTGATCGACATTCAGAATGCGCCGTTCCTAGCATCAAAGGCGGGTCTGGACATTGTTGCTAGAGAATATATTCGTGCTCTTCATCTTTTCTCAGGGACCTTTGGCCTTTATAAGGGCTTCATCCCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCCTGGAGCAGGCTAAGAAGTTCGTGAAAAGTATAGAGTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

347

Amino Acids

38.11

Weight (kDa)

7.01

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 24 - 114 2e-20 Mitochondrial carrier protein
GDPD PF03009 163 - 283 3e-08 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 360, 939
AccB1I GGYRCC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 959
AciI CCGC 1 cut(s) 869
AclWI GGATC 2 cut(s) 264, 979
AcsI RAATTY 4 cut(s) 376, 788, 825, 955
AcuI CTGAAG 2 cut(s) 11, 666
AfiI CCNNNNNNNGG 5 cut(s) 583, 650, 940, 959, 1006
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 3 cut(s) 7, 164, 641
AjnI CCWGG 2 cut(s) 184, 999
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AluBI AGCT 3 cut(s) 167, 670, 752
AluI AGCT 3 cut(s) 167, 670, 752
Alw21I GWGCWC 2 cut(s) 115, 907
Alw26I GTCTC 3 cut(s) 232, 617, 677
AlwI GGATC 2 cut(s) 264, 979
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 2 cut(s) 351, 931
ApeKI GCWGC 4 cut(s) 95, 308, 445, 448
ApoI RAATTY 4 cut(s) 376, 788, 825, 955
AseI ATTAAT 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 897
AspLEI GCGC 4 cut(s) 191, 212, 509, 850
AspS9I GGNCC 4 cut(s) 275, 344, 529, 924
AsuHPI GGTGA 1 cut(s) 787
AvaI CYCGRG 1 cut(s) 583
AvaII GGWCC 4 cut(s) 275, 344, 529, 924
BaeGI GKGCMC 1 cut(s) 590
BanI GGYRCC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 649
Bbv12I GWGCWC 2 cut(s) 115, 907
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 4 cut(s) 82, 295, 432, 460
BccI CCATC 3 cut(s) 466, 497, 539
BceAI ACGGC 2 cut(s) 835, 980
BciT130I CCWGG 2 cut(s) 186, 1001
BclI TGATCA 2 cut(s) 328, 984
BcoDI GTCTC 3 cut(s) 232, 617, 677
BfaI CTAG 6 cut(s) 116, 317, 794, 857, 888, 968
BfmI CTRYAG 2 cut(s) 105, 446
BfoI RGCGCY 1 cut(s) 510
BglII AGATCT 1 cut(s) 16
BisI GCNGC 4 cut(s) 96, 309, 446, 449
BlsI GCNGC 4 cut(s) 97, 310, 447, 450
Bme1390I CCNGG 2 cut(s) 186, 1001
Bme18I GGWCC 4 cut(s) 275, 344, 529, 924
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 4 cut(s) 275, 344, 529, 924
BmiI GGNNCC 3 cut(s) 345, 589, 925
BmrFI CCNGG 2 cut(s) 186, 1001
BmsI GCATC 2 cut(s) 751, 869
BpiI GAAGAC 1 cut(s) 649
BpmI CTGGAG 1 cut(s) 1022
Bpu10I CCTNAGC 1 cut(s) 168
BsaJI CCNNGG 4 cut(s) 194, 726, 804, 999
BsaXI ACNNNNNCTCC 2 cut(s) 674, 704
Bsc4I CCNNNNNNNGG 5 cut(s) 583, 650, 940, 959, 1006
Bse1I ACTGG 4 cut(s) 271, 321, 777, 826
Bse3DI GCAATG 2 cut(s) 58, 282
BseBI CCWGG 2 cut(s) 186, 1001
BseDI CCNNGG 4 cut(s) 194, 726, 804, 999
BseGI GGATG 4 cut(s) 369, 477, 766, 948
BseLI CCNNNNNNNGG 5 cut(s) 583, 650, 940, 959, 1006
BseMI GCAATG 2 cut(s) 58, 282
BseMII CTCAG 3 cut(s) 159, 701, 933
BseNI ACTGG 4 cut(s) 271, 321, 777, 826
BseRI GAGGAG 1 cut(s) 695
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 4 cut(s) 82, 295, 432, 460
BseYI CCCAGC 1 cut(s) 748
BshFI GGCC 2 cut(s) 353, 933
BshNI GGYRCC 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 115, 907
BsiHKCI CYCGRG 1 cut(s) 583
BslFI GGGAC 2 cut(s) 357, 937
BslI CCNNNNNNNGG 5 cut(s) 583, 650, 940, 959, 1006
BsmAI GTCTC 3 cut(s) 232, 617, 677
BsmFI GGGAC 2 cut(s) 357, 937
BsmI GAATGC 1 cut(s) 850
BsnI GGCC 2 cut(s) 353, 933
BsoBI CYCGRG 1 cut(s) 583
Bsp1286I GDGCHC 3 cut(s) 115, 590, 907
Bsp143I GATC 7 cut(s) 16, 142, 256, 328, 831, 971, 984
BspACI CCGC 1 cut(s) 869
BspANI GGCC 2 cut(s) 353, 933
BspCNI CTCAG 3 cut(s) 160, 700, 932
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 3 cut(s) 345, 589, 925
BspMAI CTGCAG 1 cut(s) 450
BspPI GGATC 2 cut(s) 264, 979
BspQI GCTCTTC 1 cut(s) 912
BspT107I GGYRCC 1 cut(s) 587
BsrDI GCAATG 2 cut(s) 58, 282
BsrI ACTGG 4 cut(s) 271, 321, 777, 826
BssECI CCNNGG 4 cut(s) 194, 726, 804, 999
BssMI GATC 7 cut(s) 16, 142, 256, 328, 831, 971, 984
BssT1I CCWWGG 3 cut(s) 194, 726, 804
Bst2UI CCWGG 2 cut(s) 186, 1001
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 912
BstAPI GCANNNNNTGC 1 cut(s) 218
BstC8I GCNNGC 4 cut(s) 453, 478, 766, 1008
BstDEI CTNAG 5 cut(s) 168, 562, 687, 919, 1011
BstEII GGTNACC 1 cut(s) 775
BstENI CCTNNNNNAGG 2 cut(s) 938, 1004
BstF5I GGATG 4 cut(s) 369, 477, 766, 948
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 4 cut(s) 191, 212, 509, 850
BstKTI GATC 7 cut(s) 19, 145, 259, 331, 834, 974, 987
BstMAI GTCTC 3 cut(s) 232, 617, 677
BstMBI GATC 7 cut(s) 16, 142, 256, 328, 831, 971, 984
BstMWI GCNNNNNNNGC 4 cut(s) 218, 293, 317, 866
BstNI CCWGG 2 cut(s) 186, 1001
BstNSI RCATGY 1 cut(s) 455
BstPI GGTNACC 1 cut(s) 775
BstSCI CCNGG 2 cut(s) 184, 999
BstSFI CTRYAG 2 cut(s) 105, 446
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 4 cut(s) 82, 295, 432, 460
BstV2I GAAGAC 1 cut(s) 649
BstX2I RGATCY 3 cut(s) 16, 256, 971
BstYI RGATCY 3 cut(s) 16, 256, 971
BsuRI GGCC 2 cut(s) 353, 933
BtsCI GGATG 4 cut(s) 369, 477, 766, 948
BtsIMutI CAGTG 2 cut(s) 132, 596
Cac8I GCNNGC 4 cut(s) 453, 478, 766, 1008
CciI TCATGA 1 cut(s) 609
CfoI GCGC 4 cut(s) 191, 212, 509, 850
Cfr13I GGNCC 4 cut(s) 275, 344, 529, 924
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviAII CATG 6 cut(s) 11, 434, 452, 610, 675, 988
DdeI CTNAG 5 cut(s) 168, 562, 687, 919, 1011
DpnI GATC 7 cut(s) 18, 144, 258, 330, 833, 973, 986
DpnII GATC 7 cut(s) 16, 142, 256, 328, 831, 971, 984
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Eco130I CCWWGG 3 cut(s) 194, 726, 804
Eco47I GGWCC 4 cut(s) 275, 344, 529, 924
Eco57I CTGAAG 2 cut(s) 11, 666
Eco88I CYCGRG 1 cut(s) 583
Eco91I GGTNACC 1 cut(s) 775
EcoNI CCTNNNNNAGG 2 cut(s) 938, 1004
EcoO109I RGGNCCY 2 cut(s) 344, 924
EcoO65I GGTNACC 1 cut(s) 775
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 184, 999
EcoT14I CCWWGG 3 cut(s) 194, 726, 804
ErhI CCWWGG 3 cut(s) 194, 726, 804
FaeI CATG 6 cut(s) 14, 437, 455, 613, 678, 991
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 2 cut(s) 357, 937
FatI CATG 6 cut(s) 10, 433, 451, 609, 674, 987
FauI CCCGC 1 cut(s) 862
FbaI TGATCA 2 cut(s) 328, 984
Fnu4HI GCNGC 4 cut(s) 96, 309, 446, 449
FokI GGATG 4 cut(s) 356, 484, 773, 935
Fsp4HI GCNGC 4 cut(s) 96, 309, 446, 449
FspBI CTAG 6 cut(s) 116, 317, 794, 857, 888, 968
GlaI GCGC 4 cut(s) 190, 211, 508, 849
GluI GCNGC 4 cut(s) 96, 309, 446, 449
GsaI CCCAGC 1 cut(s) 752
GsuI CTGGAG 1 cut(s) 1022
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 2 cut(s) 353, 933
HhaI GCGC 4 cut(s) 191, 212, 509, 850
Hin1II CATG 6 cut(s) 14, 437, 455, 613, 678, 991
Hin6I GCGC 4 cut(s) 189, 210, 507, 848
HinP1I GCGC 4 cut(s) 189, 210, 507, 848
HinfI GANTC 5 cut(s) 566, 601, 654, 685, 1034
HphI GGTGA 1 cut(s) 787
Hpy188I TCNGA 2 cut(s) 30, 843
Hpy188III TCNNGA 4 cut(s) 262, 610, 875, 1021
HpyAV CCTTC 2 cut(s) 35, 565
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 5 cut(s) 98, 448, 596, 709, 764
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 293, 317, 866
HpyF3I CTNAG 5 cut(s) 168, 562, 687, 919, 1011
HpySE526I ACGT 1 cut(s) 735
Hsp92II CATG 6 cut(s) 14, 437, 455, 613, 678, 991
HspAI GCGC 4 cut(s) 189, 210, 507, 848
Ksp22I TGATCA 2 cut(s) 328, 984
Kzo9I GATC 7 cut(s) 16, 142, 256, 328, 831, 971, 984
LguI GCTCTTC 1 cut(s) 912
LmnI GCTCC 1 cut(s) 1003
Lsp1109I GCAGC 4 cut(s) 82, 295, 432, 460
LweI GCATC 2 cut(s) 751, 869
MaeI CTAG 6 cut(s) 116, 317, 794, 857, 888, 968
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 2 cut(s) 550, 775
MalI GATC 7 cut(s) 18, 144, 258, 330, 833, 973, 986
MboI GATC 7 cut(s) 16, 142, 256, 328, 831, 971, 984
MboII GAAGA 3 cut(s) 26, 649, 899
MflI RGATCY 3 cut(s) 16, 256, 971
MhlI GDGCHC 3 cut(s) 115, 590, 907
MluCI AATT 9 cut(s) 87, 270, 376, 402, 516, 605, 788, 825, 955
MlyI GAGTC 4 cut(s) 595, 663, 679, 1043
MmeI TCCRAC 2 cut(s) 161, 631
MnlI CCTC 7 cut(s) 163, 238, 405, 441, 587, 673, 711
MroXI GAANNNNTTC 1 cut(s) 897
MseI TTAA 5 cut(s) 33, 77, 101, 303, 695
MspR9I CCNGG 2 cut(s) 186, 1001
Mva1269I GAATGC 1 cut(s) 850
MvaI CCWGG 2 cut(s) 186, 1001
MwoI GCNNNNNNNGC 4 cut(s) 218, 293, 317, 866
NdeII GATC 7 cut(s) 16, 142, 256, 328, 831, 971, 984
NlaIII CATG 6 cut(s) 14, 437, 455, 613, 678, 991
NlaIV GGNNCC 3 cut(s) 345, 589, 925
NmuCI GTSAC 1 cut(s) 775
NspI RCATGY 1 cut(s) 455
PaeI GCATGC 1 cut(s) 455
PagI TCATGA 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 912
PctI GAATGC 1 cut(s) 850
PdmI GAANNNNTTC 1 cut(s) 897
PfeI GAWTC 1 cut(s) 566
PflFI GACNNNGTC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 4 cut(s) 97, 310, 447, 450
PleI GAGTC 4 cut(s) 595, 662, 679, 1042
PpsI GAGTC 4 cut(s) 595, 662, 679, 1042
PpuMI RGGWCCY 2 cut(s) 344, 924
PshBI ATTAAT 1 cut(s) 303
PsiI TTATAA 2 cut(s) 360, 939
Psp5II RGGWCCY 2 cut(s) 344, 924
Psp6I CCWGG 2 cut(s) 184, 999
PspEI GGTNACC 1 cut(s) 775
PspFI CCCAGC 1 cut(s) 748
PspGI CCWGG 2 cut(s) 184, 999
PspN4I GGNNCC 3 cut(s) 345, 589, 925
PspPI GGNCC 4 cut(s) 275, 344, 529, 924
PspPPI RGGWCCY 2 cut(s) 344, 924
PstI CTGCAG 1 cut(s) 450
PsuI RGATCY 3 cut(s) 16, 256, 971
PsyI GACNNNGTC 1 cut(s) 688
SapI GCTCTTC 1 cut(s) 912
SaqAI TTAA 5 cut(s) 33, 77, 101, 303, 695
SatI GCNGC 4 cut(s) 96, 309, 446, 449
Sau3AI GATC 7 cut(s) 16, 142, 256, 328, 831, 971, 984
Sau96I GGNCC 4 cut(s) 275, 344, 529, 924
SchI GAGTC 4 cut(s) 595, 663, 679, 1043
ScrFI CCNGG 2 cut(s) 186, 1001
SduI GDGCHC 3 cut(s) 115, 590, 907
SfaNI GCATC 2 cut(s) 751, 869
SfcI CTRYAG 2 cut(s) 105, 446
SinI GGWCC 4 cut(s) 275, 344, 529, 924
SphI GCATGC 1 cut(s) 455
Sse9I AATT 9 cut(s) 87, 270, 376, 402, 516, 605, 788, 825, 955
SsiI CCGC 1 cut(s) 869
SspMI CTAG 6 cut(s) 116, 317, 794, 857, 888, 968
StyD4I CCNGG 2 cut(s) 184, 999
StyI CCWWGG 3 cut(s) 194, 726, 804
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 738
TaqI TCGA 1 cut(s) 834
TaqII GACCGA 1 cut(s) 517
TasI AATT 9 cut(s) 87, 270, 376, 402, 516, 605, 788, 825, 955
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 5 cut(s) 33, 77, 101, 303, 695
Tru9I TTAA 5 cut(s) 33, 77, 101, 303, 695
TscAI CASTG 2 cut(s) 132, 603
TseFI GTSAC 1 cut(s) 775
TseI GCWGC 4 cut(s) 95, 308, 445, 448
Tsp45I GTSAC 1 cut(s) 775
TspDTI ATGAA 8 cut(s) 27, 49, 358, 369, 598, 801, 899, 937
TspRI CASTG 2 cut(s) 132, 603
Tth111I GACNNNGTC 1 cut(s) 688
Van91I CCANNNNNTGG 1 cut(s) 959
VpaK11BI GGWCC 4 cut(s) 275, 344, 529, 924
VspI ATTAAT 1 cut(s) 303
XagI CCTNNNNNAGG 2 cut(s) 938, 1004
XapI RAATTY 4 cut(s) 376, 788, 825, 955
XceI RCATGY 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 897
XspI CTAG 6 cut(s) 116, 317, 794, 857, 888, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.