Rw1G002160

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012678
Physical Location & Seq
Reverse (-)
3911493 .. 3912177
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002160.1

Sequence Viewer

Length: 498 bp
ATGTCAAGTGATGGAGTTGCCTTCTGCTTATATTCCATAGACCTCAACTCAGGCACCAATGCATTGACTCAATTCATGACCAAGAGTGAGACTATCCCTGAACTTCAACGTGAAGCTGGAGTCTTCTCGTTCCAGTTCACATGGGAGGAGATTCAGTCCTTAAAAACCCAACTGCAAAGTCCCTATGGAACCAAGGAAAACGTGTACAGAAACCCAGCTAACAAGGATGCAGGCAAACTGGTGACCCTTAATGAATTCCTAGAGTTTGCCAAGGAAAAGACAACTACTGGAATTTTGATCGACATTCAGAATGCGCTGTACCTAGCATCAAAGGCGGGTCTGGACATTGTTGGTACCGTAACCTCTGCCTTGAAAAATGCCACACTCGACAAGCAATCGACTCAAAAGGTCATGATCAAATCAGATGACACTTCAGTCTTGTCTAAATTCGCTGATGAGAAAGCATACACAAGGGTGTACAACATTAGGAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

165

Amino Acids

18.4

Weight (kDa)

7.73

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 1 - 155 9.9e-07 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 2 cut(s) 53, 353
AciI CCGC 1 cut(s) 335
AcsI RAATTY 3 cut(s) 254, 291, 446
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 4 cut(s) 206, 320, 355, 479
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 107, 373
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 2 cut(s) 116, 218
AluI AGCT 2 cut(s) 116, 218
Alw26I GTCTC 1 cut(s) 83
ApoI RAATTY 3 cut(s) 254, 291, 446
Asp718I GGTACC 1 cut(s) 353
AspLEI GCGC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 253
BanI GGYRCC 2 cut(s) 53, 353
BbsI GAAGAC 1 cut(s) 115
BccI CCATC 1 cut(s) 5
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 2 cut(s) 260, 323
BmiI GGNNCC 3 cut(s) 55, 190, 355
BmsI GCATC 2 cut(s) 217, 335
BpiI GAAGAC 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 192, 270
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 3 cut(s) 133, 243, 292
BseDI CCNNGG 2 cut(s) 192, 270
BseGI GGATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 3 cut(s) 133, 243, 292
BseRI GAGGAG 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 214
BshNI GGYRCC 2 cut(s) 53, 353
BslFI GGGAC 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 316
Bsp1407I TGTACA 2 cut(s) 204, 477
Bsp143I GATC 2 cut(s) 297, 414
BspACI CCGC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 62
BspHI TCATGA 2 cut(s) 75, 411
BspLI GGNNCC 3 cut(s) 55, 190, 355
BspT107I GGYRCC 2 cut(s) 53, 353
BsrGI TGTACA 2 cut(s) 204, 477
BsrI ACTGG 3 cut(s) 133, 243, 292
BssECI CCNNGG 2 cut(s) 192, 270
BssMI GATC 2 cut(s) 297, 414
BssT1I CCWWGG 2 cut(s) 192, 270
Bst4CI ACNGT 1 cut(s) 358
BstAUI TGTACA 2 cut(s) 204, 477
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 49
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 300, 417
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 297, 414
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstPI GGTNACC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 232
CciI TCATGA 2 cut(s) 75, 411
CfoI GCGC 1 cut(s) 316
Csp6I GTAC 4 cut(s) 205, 319, 354, 478
CviAII CATG 3 cut(s) 76, 141, 412
CviJI RGCY 2 cut(s) 116, 218
CviKI_1 RGCY 2 cut(s) 116, 218
CviQI GTAC 4 cut(s) 205, 319, 354, 478
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 299, 416
DpnII GATC 2 cut(s) 297, 414
DrdI GACNNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 434
Eco130I CCWWGG 2 cut(s) 192, 270
Eco57I CTGAAG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 192, 270
EcoT22I ATGCAT 1 cut(s) 64
ErhI CCWWGG 2 cut(s) 192, 270
FaeI CATG 3 cut(s) 79, 144, 415
FaiI YATR 7 cut(s) 31, 38, 77, 142, 186, 413, 466
FaqI GGGAC 1 cut(s) 165
FatI CATG 3 cut(s) 75, 140, 411
FauI CCCGC 1 cut(s) 328
FbaI TGATCA 1 cut(s) 414
FokI GGATG 1 cut(s) 239
FspBI CTAG 2 cut(s) 260, 323
GlaI GCGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 138
HhaI GCGC 1 cut(s) 316
Hin1II CATG 3 cut(s) 79, 144, 415
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 4 cut(s) 67, 120, 151, 400
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 138, 205, 478
Hpy188I TCNGA 2 cut(s) 309, 424
Hpy188III TCNNGA 3 cut(s) 76, 341, 412
Hpy8I GTNNAC 3 cut(s) 138, 205, 478
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 2 cut(s) 109, 201
HpyCH4V TGCA 3 cut(s) 62, 175, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 2 cut(s) 109, 201
Hsp92II CATG 3 cut(s) 79, 144, 415
HspAI GCGC 1 cut(s) 314
KpnI GGTACC 1 cut(s) 357
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 2 cut(s) 297, 414
LpnPI CCDG 9 cut(s) 36, 102, 111, 146, 216, 224, 228, 273, 326
LweI GCATC 2 cut(s) 217, 335
MaeI CTAG 2 cut(s) 260, 323
MaeII ACGT 2 cut(s) 109, 201
MaeIII GTNAC 2 cut(s) 241, 358
MalI GATC 2 cut(s) 299, 416
MboI GATC 2 cut(s) 297, 414
MboII GAAGA 1 cut(s) 115
MluCI AATT 4 cut(s) 71, 254, 291, 446
MlyI GAGTC 3 cut(s) 61, 129, 394
MnlI CCTC 4 cut(s) 53, 139, 373, 483
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 2 cut(s) 161, 249
MslI CAYNNNNRTG 1 cut(s) 473
Mva1269I GAATGC 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeII GATC 2 cut(s) 297, 414
NlaIII CATG 3 cut(s) 79, 144, 415
NlaIV GGNNCC 3 cut(s) 55, 190, 355
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 64
OliI CACNNNNGTG 1 cut(s) 473
PagI TCATGA 2 cut(s) 75, 411
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 151
PleI GAGTC 3 cut(s) 61, 128, 394
PpsI GAGTC 3 cut(s) 61, 128, 394
PspEI GGTNACC 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 55, 190, 355
RsaI GTAC 4 cut(s) 206, 320, 355, 479
RsaNI GTAC 4 cut(s) 205, 319, 354, 478
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 2 cut(s) 161, 249
Sau3AI GATC 2 cut(s) 297, 414
SchI GAGTC 3 cut(s) 61, 129, 394
SetI ASST 8 cut(s) 45, 112, 118, 204, 220, 324, 365, 411
SfaNI GCATC 2 cut(s) 217, 335
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 4 cut(s) 71, 254, 291, 446
SsiI CCGC 1 cut(s) 335
SspMI CTAG 2 cut(s) 260, 323
StyI CCWWGG 2 cut(s) 192, 270
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 2 cut(s) 112, 204
TaqI TCGA 3 cut(s) 300, 387, 398
TasI AATT 4 cut(s) 71, 254, 291, 446
TatI WGTACW 2 cut(s) 204, 477
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 2 cut(s) 161, 249
Tru9I TTAA 2 cut(s) 161, 249
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 64, 267
XapI RAATTY 3 cut(s) 254, 291, 446
XspI CTAG 2 cut(s) 260, 323
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.