Rh1DG043000

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012678
Physical Location & Seq
Forward (+)
6848656 .. 6849203
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG043000.1

Sequence Viewer

Length: 345 bp
ATGTCAAGTGATGGAGTTGCCTTCTGCTTAGATTCCATAGACCTCAACTCAGGCACCAATGCATTGACTCAATTCATGACCAAGAGTGAGACTATCCCTGAACTTCAACCTGAAGCTGGAGTCTTCTCGTTCCAGTTCACATGGGAGGAGATTCAGTCCTTAAAAACCCAACTGCAAAGTCCCTATGGAACCAAGGAAAACGTGTATAGAAACCCAGCTAACAAGGATGCGGGCAAACTGGTGACCCTTAATGAATTCCTAGAGTTTGCCAAGGAAAAGGCAACTACTGGAATTTTGATCGACATTCAGCATCAAAGGCGGGTCTGGACATTGTTGGTACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

114

Amino Acids

12.83

Weight (kDa)

4.89

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 2 cut(s) 53, 337
AciI CCGC 2 cut(s) 230, 319
AcsI RAATTY 2 cut(s) 254, 291
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 2 cut(s) 116, 218
AluI AGCT 2 cut(s) 116, 218
Alw26I GTCTC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 254, 291
Asp718I GGTACC 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 253
BanI GGYRCC 2 cut(s) 53, 337
BbsI GAAGAC 1 cut(s) 115
BccI CCATC 1 cut(s) 5
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 55, 190, 339
BmsI GCATC 2 cut(s) 217, 319
BpiI GAAGAC 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 192, 270
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 3 cut(s) 133, 243, 292
BseDI CCNNGG 2 cut(s) 192, 270
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 3 cut(s) 133, 243, 292
BseRI GAGGAG 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 214
BshNI GGYRCC 2 cut(s) 53, 337
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 2 cut(s) 230, 319
BspCNI CTCAG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 55, 190, 339
BspT107I GGYRCC 2 cut(s) 53, 337
BsrI ACTGG 3 cut(s) 133, 243, 292
BssECI CCNNGG 2 cut(s) 192, 270
BssMI GATC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 192, 270
Bst4CI ACNGT 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 28, 49
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstPI GGTNACC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 232
CciI TCATGA 1 cut(s) 75
Csp6I GTAC 1 cut(s) 338
CviAII CATG 2 cut(s) 76, 141
CviJI RGCY 2 cut(s) 116, 218
CviKI_1 RGCY 2 cut(s) 116, 218
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 28, 49
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 192, 270
Eco57I CTGAAG 1 cut(s) 132
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 192, 270
EcoT22I ATGCAT 1 cut(s) 64
ErhI CCWWGG 2 cut(s) 192, 270
FaeI CATG 2 cut(s) 79, 144
FaiI YATR 5 cut(s) 38, 77, 142, 186, 207
FaqI GGGAC 1 cut(s) 165
FatI CATG 2 cut(s) 75, 140
FauI CCCGC 2 cut(s) 223, 312
FokI GGATG 1 cut(s) 239
FspBI CTAG 1 cut(s) 260
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 138
Hin1II CATG 2 cut(s) 79, 144
HinfI GANTC 4 cut(s) 32, 67, 120, 151
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 138
Hpy188III TCNNGA 2 cut(s) 76, 325
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 62, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 2 cut(s) 28, 49
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 2 cut(s) 79, 144
KpnI GGTACC 1 cut(s) 341
Kzo9I GATC 1 cut(s) 297
LpnPI CCDG 9 cut(s) 36, 102, 111, 123, 146, 224, 228, 273, 310
LweI GCATC 2 cut(s) 217, 319
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 1 cut(s) 115
MluCI AATT 3 cut(s) 71, 254, 291
MlyI GAGTC 2 cut(s) 61, 129
MnlI CCTC 2 cut(s) 53, 139
Mph1103I ATGCAT 1 cut(s) 64
MseI TTAA 2 cut(s) 161, 249
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 1 cut(s) 297
NlaIII CATG 2 cut(s) 79, 144
NlaIV GGNNCC 3 cut(s) 55, 190, 339
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 64
PagI TCATGA 1 cut(s) 75
PfeI GAWTC 2 cut(s) 32, 151
PleI GAGTC 2 cut(s) 61, 128
PpsI GAGTC 2 cut(s) 61, 128
PspEI GGTNACC 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 55, 190, 339
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 161, 249
Sau3AI GATC 1 cut(s) 297
SchI GAGTC 2 cut(s) 61, 129
SetI ASST 5 cut(s) 45, 112, 118, 204, 220
SfaNI GCATC 2 cut(s) 217, 319
Sse9I AATT 3 cut(s) 71, 254, 291
SsiI CCGC 2 cut(s) 230, 319
SspMI CTAG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 192, 270
TaaI ACNGT 1 cut(s) 342
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 300
TasI AATT 3 cut(s) 71, 254, 291
TfiI GAWTC 2 cut(s) 32, 151
Tru1I TTAA 2 cut(s) 161, 249
Tru9I TTAA 2 cut(s) 161, 249
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 64, 267
XapI RAATTY 2 cut(s) 254, 291
XspI CTAG 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.