Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005310

Physical Location & Seq

Genomic Coordinates Forward (+)

16641621 .. 16642470

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGGCTGGTAGTGAGCCCTCATTTGTATAATGAGATGATGAAGTTGTATACGGCCACGGCGCAGTTTGGGAAGGTACCGCTTGTTATAAAGCAAATGCGGAGTAACAAGATACCTCTGACTGGTCTTTCGTATAATCTTTGTATGAATGCGTGTGCAGAGCTATCTGGGGTTGCTTCGGTTGAGATGGTTTATAGAGAAATGGTGAGTGATGAGAATGTTCAGTTGGCCGTAAGAAATGCTGAAGAGAAGCTGTCTAATAGAAGTCGCCTTGGTTATTTCTTCCTCATTGCACTGTGGAATGGGAGTCAGTTTGCTTTTAGGTATGATGTTCGAGTCTCCAGTGTCCTTCTAGGTGCATACATGCGGAATGGGATGGTGGAAAAAGCCGAGTCATTACATCAGCACACATTGGATAGAGGCGGTTGCCCAAATTATAAGACATGGGAGATTCTTATGGAAGGAAGGCTGAAAAACCAAAACATGGATGAAGCAGTTGAAGCAATGAAACAAGGATTTGCAATGTTGCAAGACTGTCATTGGAGGCCATCAGATGATACTGTTATGGCCTTTGCTGATTATTTGAAAGGCAAGGAAAATTTGAGGATGCAAATTGGTATATATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

209

Amino Acids

23.86

Weight (kDa)

6.91

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27460
fragaria_vesca	FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 FvH4_5g36010
malus_domestica	MD00G1136100.v1.1 MD15G1379700.v1.1
prunus_persica	Prupe.1G525900_v2.0.a1
pyrus_communis	pycom15g34030
rosa_chinensis	RchiOBHm_Chr1g0327731 RchiOBHm_Chr7g0237751
rosa_laevigata	RLG00000000970 RLG00000029974
rosa_multiflora	Rmu_ssc0000067.1_g000033
rosa_roxburghii	Rroxscaffold_3G00223780
rosa_rugosa	Rorug01G0070100 Rorug07G0307800
rosa_samantha	Rh1AG086500 Rh1CG084100 Rh1DG091000 Rh1DG091100 Rh4AG105300 Rh4CG113800 Rh7AG463800 Rh7BG433900 Rh7CG480800 Rh7DG449700
rosa_wichuraiana	Rw0G013090 Rw7G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	89, 438
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	1 cut(s)	76
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	4 cut(s)	80, 100, 367, 423
AcoI	YGGCCR	2 cut(s)	54, 228
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	122, 484
AgsI	TTSAA	2 cut(s)	500, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	2 cut(s)	163, 253
AluI	AGCT	2 cut(s)	163, 253
Alw26I	GTCTC	1 cut(s)	343
AoxI	GGCC	4 cut(s)	54, 228, 545, 567
ApoI	RAATTY	1 cut(s)	598
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
Asp718I	GGTACC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	20
BccI	CCATC	3 cut(s)	181, 370, 556
BceAI	ACGGC	3 cut(s)	69, 75, 215
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	1 cut(s)	597
BpmI	CTGGAG	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	57, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 484
Bse1I	ACTGG	2 cut(s)	127, 342
Bse3DI	GCAATG	3 cut(s)	288, 510, 528
BseDI	CCNNGG	2 cut(s)	57, 271
BseGI	GGATG	3 cut(s)	381, 493, 612
BseLI	CCNNNNNNNGG	2 cut(s)	122, 484
BseMI	GCAATG	3 cut(s)	288, 510, 528
BseNI	ACTGG	2 cut(s)	127, 342
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	56, 230, 547, 569
BshNI	GGYRCC	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	122, 484
BsmAI	GTCTC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	4 cut(s)	56, 230, 547, 569
Bsp1286I	GDGCHC	1 cut(s)	20
BspACI	CCGC	4 cut(s)	80, 100, 367, 423
BspANI	GGCC	4 cut(s)	56, 230, 547, 569
BspLI	GGNNCC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	76
BsrDI	GCAATG	3 cut(s)	288, 510, 528
BsrI	ACTGG	2 cut(s)	127, 342
BssECI	CCNNGG	2 cut(s)	57, 271
BssNAI	GTATAC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	271
Bst1107I	GTATAC	1 cut(s)	51
Bst4CI	ACNGT	3 cut(s)	297, 536, 562
Bst6I	CTCTTC	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	3 cut(s)	381, 493, 612
BstHHI	GCGC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	51
BsuRI	GGCC	4 cut(s)	56, 230, 547, 569
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	381, 493, 612
BtsIMutI	CAGTG	2 cut(s)	293, 349
CfoI	GCGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	364, 444, 484
CviQI	GTAC	1 cut(s)	77
EaeI	YGGCCR	2 cut(s)	54, 228
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	3 cut(s)	367, 447, 487
FatI	CATG	3 cut(s)	363, 443, 483
FblI	GTMKAC	1 cut(s)	50
FokI	GGATG	3 cut(s)	388, 500, 619
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	325
HaeIII	GGCC	4 cut(s)	56, 230, 547, 569
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	367, 447, 487
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	4 cut(s)	307, 336, 392, 451
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	120, 553
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	4 cut(s)	67, 359, 455, 459
HpyCH4III	ACNGT	3 cut(s)	297, 536, 562
HpyCH4V	TGCA	6 cut(s)	158, 293, 359, 521, 529, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
Hsp92II	CATG	3 cut(s)	367, 447, 487
HspAI	GCGC	1 cut(s)	62
KpnI	GGTACC	1 cut(s)	80
LpnPI	CCDG	3 cut(s)	108, 153, 355
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	104
MboII	GAAGA	2 cut(s)	257, 274
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	3 cut(s)	433, 598, 612
MlyI	GAGTC	3 cut(s)	316, 345, 401
MnlI	CCTC	6 cut(s)	30, 126, 296, 413, 537, 597
Mva1269I	GAATGC	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	500
NlaIII	CATG	3 cut(s)	367, 447, 487
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	415
NspI	RCATGY	1 cut(s)	367
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	451
PflMI	CCANNNNNTGG	1 cut(s)	484
PleI	GAGTC	3 cut(s)	315, 344, 400
PpsI	GAGTC	3 cut(s)	315, 344, 400
PsiI	TTATAA	2 cut(s)	89, 438
PspN4I	GGNNCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SchI	GAGTC	3 cut(s)	316, 345, 401
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	6 cut(s)	78, 118, 165, 255, 326, 358
SfaNI	GCATC	1 cut(s)	597
Sse9I	AATT	3 cut(s)	433, 598, 612
SsiI	CCGC	4 cut(s)	80, 100, 367, 423
SspMI	CTAG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	297, 536, 562
TaqI	TCGA	1 cut(s)	334
TasI	AATT	3 cut(s)	433, 598, 612
TfiI	GAWTC	1 cut(s)	451
TscAI	CASTG	2 cut(s)	300, 349
TspDTI	ATGAA	4 cut(s)	56, 161, 504, 521
TspRI	CASTG	2 cut(s)	300, 349
Van91I	CCANNNNNTGG	1 cut(s)	484
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.