RchiOBHm_Chr1g0329341

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015494
Physical Location & Seq
Forward (+)
18867274 .. 18870471
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2478 bp
ATGAGCTCACAGCTCTTGCCAGTCACACCTCTGCTCTCCATAACCAACACCAAAACACCATCATCACCACCACCCCCAATATCAACTAGACTTCCAATACCAACATCAACATTTCACCAGCTTTCCCAAAGAAGCCACATTCCTTCTCATGTCTACAAGCACCCTACAGCCATACTCCTCGAGCTCTGCACTTCCATGAGAGAGCTCCACCAAATCTTCCCCCTCATAATCAAGAACGGTCTCTATAACGAGCACTACTTCCAGACCAAGCTCGTCAGCCTCTTCTGCAAATACGGCAGTCCAATTGAAGCCCACCGGGTTTTCGACGCCGTCGGGGACAAACTCGACGTTTTCTATCACACTCTGCTTAAAGGGTATGCCAAGAACTCCTCTTTAGGGGAGGCCATTTCCTTCTTTTGCCGGTTGAAGCATGATGGGGTTGCCCCTGTTGTGTATAACTTTACTTACTTGCTCAAGGCTTGTGGCGATAATGCTGACCTGAGGAGGGGGAAGGAGATTCATGGCTCTCTGATTACCAATGGCTTTGCTACTAATCTGTTTGCGATGACCGGAGTTGTGAATTTGTATGCTAAGTGTAGGCAGATTGATGATGCATATAAGATGTTCGATAGAATGCCTGAGAGGGACTTGGTTTCTTGGAACACTATTGTTGCTGCTTATGCGCAAAATGGGTTCGCCAGGAGAGCTTTGGAGTTGGTTATAAGGATGCAGGAGGAAGGCCAGAGGCCCGATTCCATCACATTGGTCACTGCATTGCCTGCTGTTGCAGATTTTGGGTCCTTGGTGATTGGAAAGTCGATTCATGCCTATGTTATAAGAGCCAGTTTTGAGTCACTTGTGAACATTTCTACCGCTCTTCTAGACATGTATTCGAAATGTGGATCTGTGGCCACTGCTCGGTCGATTTTCAACAGGATGAATCACAAGACTGTTGTTTCCTGGAATTCCATGATAGATGGGTATGCACAAAATGAAGATCCTGAGGAAGCAATGGCGATTTTCCAGAAGATGCTGGATGAAGGCTTTGAACCAACCAATGTTACTATTATGGAAGCTTTACATGCTTGTGCTGATTTGGGAGATCTTGAGCGGGGAAAGTTTGTGCATAAATTATTGGATCAACTGAACCTCGGATATGATGTCTCGGTTGTGAATTCTTTGATATCCATGTATTCCAAGTGTAAGAGAGTTGATATTGCTGCAAAATTGTTTAGAGGCTTAAAGGGTAAGACCATCGTCTCATGGAATGCCATGATATTAGGTTTTGCACAGAATGGTCGCGTCAGCGAGGCTTTAAGTCACTTCTGTGAGATGCAATCTCAAAATATAAAGCCAGATTCGTTTACAATGGTGAGTGTAATTCCAGCTCTTGCAGAGTTATCAGTTACACGTCAGGCTAAGTGGATTCATGGACTTGTTGTAAGAAAATGTTTTGACAAAAACGTTTTTGTGATGACTGCTCTTGTTGATATGTACGCGAAATGTGGAGCTGTCCACACTGCAAGAAAACTTTTTGACATGATGGATGACCGGCATGTGACAACATGGAATAGTATGATCGATGGATATGGAACAAATGGGCTTGGAAAGGCTGCTGTGGAACTGTTCAATGAAATGAAAAAGGGAATAATAAAGCCAAATGATATAACATTTCTATGTGTGATATCTGCTTGCTCTCATTCAGGTTTGGTGGAAGACGGTCTTCAATTCTTTGAAAGCATGAAGGATGACTATGGCTTGGAGCCTGCAATGGATCACTACGGTGCGATGGTTGATCTTCTTGGTCGAGCTGGCCGACTAAATGAGGCTTGGGATTTTATTCAAAAGATGCCTATGGAACCTGGCATTACAGTCTTTGGGGCAATGTTAGGGGCTTGCAGAATTCATAAAAATGTTGAATTGGGGGAAAAGGCAGCAGATAAAATATTTGAGTTGAACCCTGTTGAAGGTGGGTACCACGTTTTGCTTGCTAACATATATTCCACAGCTTCAATGTGGGACAAGGTGGCCAAAGTGCGAACAACAATGGAGAAGAAAGGGCTCAAGAAAACTCCAGGCTGCAGTTTAGTGGATTTAAAGAACCAGGTTCACACTTTCTATTCTGGAAGTACAAGCCATCCCCAATCCAAGAGAATATATACTTATCTGGAGACACTGGGAGATAAGATCAAGGCTGCTGGTTATGTGCCAGACACAAATTCAATTCATGATGTGGAAGATGATGTCAAGGAGCAATTGCTAAATAGCCATAGTGAGAAGCTGGCTATTGCATTTGGACTCTTGAATACTACCCCGGGTACAACAATACACATTCGAAAGAACCTACGAGTTTGTGGTGATTGCCACAACGCAACCAAGTACATTTCACTAGTAACTGGAAGGGAAATCATAGTGCGTGATATGCATCGGTTCCATCATTTCAGGAATGGAACTTGTTCTTGCGGAGATTATTGGTGA

Protein Analysis

825

Amino Acids

92.05

Weight (kDa)

8.24

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 216 - 257 5.7e-06 PPR repeat family
PPR_2 PF13041 317 - 356 1.2e-10 PPR repeat family
PPR PF01535 319 - 349 7.6e-10 PPR repeat
PPR_2 PF13041 418 - 465 1.1e-11 PPR repeat family
PPR PF01535 420 - 450 2.2e-07 PPR repeat
PPR_2 PF13041 520 - 566 2.7e-13 PPR repeat family
PPR PF01535 522 - 548 5.3e-08 PPR repeat
E_motif PF20431 636 - 697 8.4e-20 E motif
DYW_deaminase PF14432 734 - 825 1.9e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11290
fragaria_vesca FvH4_7g04350
malus_domestica MD07G1040900.v1.1
prunus_persica Prupe.2G049000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0329341
rosa_laevigata RLG00000029901
rosa_multiflora Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii Rroxscaffold_4G00321210
rosa_rugosa Rorug01G0078700
rosa_samantha Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana Rw1G007520 Rw1G007580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 722, 836
Acc16I TGCGCA 1 cut(s) 684
Acc65I GGTACC 1 cut(s) 1974
AccB1I GGYRCC 1 cut(s) 1974
AccBSI CCGCTC 2 cut(s) 875, 1111
AccI GTMKAC 1 cut(s) 153
AccII CGCG 2 cut(s) 1302, 1499
AciI CCGC 3 cut(s) 873, 1111, 2463
AclI AACGTT 1 cut(s) 1464
AclWI GGATC 4 cut(s) 910, 992, 1146, 1782
AcoI YGGCCR 3 cut(s) 909, 1813, 2028
AcsI RAATTY 5 cut(s) 580, 964, 1174, 1902, 2218
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 5 cut(s) 1496, 1976, 2131, 2320, 2381
AfiI CCNNNNNNNGG 4 cut(s) 396, 505, 918, 1967
AflIII ACRYGT 2 cut(s) 885, 1409
AhlI ACTAGT 1 cut(s) 2389
AjiI CACGTC 1 cut(s) 1412
AjnI CCWGG 5 cut(s) 698, 959, 1861, 2074, 2103
AleI CACNNNNGTG 2 cut(s) 1326, 1782
Alw21I GWGCWC 4 cut(s) 8, 186, 207, 255
Alw26I GTCTC 4 cut(s) 245, 1168, 1264, 2165
AlwI GGATC 4 cut(s) 910, 992, 1146, 1782
Ama87I CYCGRG 2 cut(s) 179, 2314
AoxI GGCC 6 cut(s) 402, 739, 746, 909, 1813, 2028
ApeKI GCWGC 6 cut(s) 674, 1220, 1613, 1934, 2079, 2195
ApoI RAATTY 5 cut(s) 580, 964, 1174, 1902, 2218
Asp700I GAANNNNTTC 1 cut(s) 2455
Asp718I GGTACC 1 cut(s) 1974
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 2 cut(s) 747, 798
AsuC2I CCSGG 3 cut(s) 317, 2315, 2316
AsuHPI GGTGA 5 cut(s) 57, 107, 817, 1384, 2369
AsuII TTCGAA 2 cut(s) 893, 2335
AvaI CYCGRG 2 cut(s) 179, 2314
AvaII GGWCC 1 cut(s) 798
AxyI CCTNAGG 2 cut(s) 500, 1002
BalI TGGCCA 2 cut(s) 911, 2030
BanI GGYRCC 1 cut(s) 1974
BanII GRGCYC 4 cut(s) 8, 186, 207, 2064
BbsI GAAGAC 2 cut(s) 1715, 1722
Bbv12I GWGCWC 4 cut(s) 8, 186, 207, 255
BbvI GCAGC 6 cut(s) 661, 1207, 1600, 1946, 2066, 2182
BceAI ACGGC 2 cut(s) 310, 314
BciT130I CCWGG 5 cut(s) 700, 961, 1863, 2076, 2105
BcnI CCSGG 3 cut(s) 317, 2315, 2316
BcoDI GTCTC 4 cut(s) 245, 1168, 1264, 2165
BcuI ACTAGT 1 cut(s) 2389
BfaI CTAG 3 cut(s) 87, 881, 2390
BfmI CTRYAG 2 cut(s) 165, 2080
BglII AGATCT 1 cut(s) 1102
BisI GCNGC 6 cut(s) 675, 1221, 1614, 1935, 2080, 2196
BlsI GCNGC 6 cut(s) 676, 1222, 1615, 1936, 2081, 2197
Bme1390I CCNGG 8 cut(s) 317, 700, 961, 1863, 2076, 2105, 2315, 2316
Bme18I GGWCC 1 cut(s) 798
BmeT110I CYCGRG 2 cut(s) 179, 2314
BmgBI CACGTC 1 cut(s) 1412
BmgT120I GGNCC 2 cut(s) 747, 798
BmiI GGNNCC 5 cut(s) 799, 1764, 1860, 1976, 2432
BmrFI CCNGG 8 cut(s) 317, 700, 961, 1863, 2076, 2105, 2315, 2316
BmrI ACTGGG 1 cut(s) 2186
BmsI GCATC 6 cut(s) 601, 717, 1020, 1323, 1839, 2434
BmuI ACTGGG 1 cut(s) 2186
BoxI GACNNNNGTC 1 cut(s) 1256
BpiI GAAGAC 2 cut(s) 1715, 1722
BpmI CTGGAG 2 cut(s) 2058, 2189
Bpu14I TTCGAA 2 cut(s) 893, 2335
BpuEI CTTGAG 3 cut(s) 458, 1127, 2048
BpuMI CCSGG 3 cut(s) 317, 2315, 2316
Bsa29I ATCGAT 1 cut(s) 1581
BsaBI GATNNNNATC 1 cut(s) 2424
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 4 cut(s) 801, 1150, 2313, 2314
BsaWI WCCGGW 1 cut(s) 569
Bsc4I CCNNNNNNNGG 4 cut(s) 396, 505, 918, 1967
Bse118I RCCGGY 2 cut(s) 420, 1551
Bse1I ACTGG 4 cut(s) 20, 843, 2181, 2401
Bse21I CCTNAGG 2 cut(s) 500, 1002
Bse3DI GCAATG 4 cut(s) 773, 1017, 1776, 1890
Bse8I GATNNNNATC 1 cut(s) 2424
BseBI CCWGG 5 cut(s) 700, 961, 1863, 2076, 2105
BseCI ATCGAT 1 cut(s) 1581
BseDI CCNNGG 4 cut(s) 801, 1150, 2313, 2314
BseGI GGATG 6 cut(s) 732, 942, 1042, 1552, 1753, 2137
BseJI GATNNNNATC 1 cut(s) 2424
BseLI CCNNNNNNNGG 4 cut(s) 396, 505, 918, 1967
BseMI GCAATG 4 cut(s) 773, 1017, 1776, 1890
BseMII CTCAG 3 cut(s) 491, 630, 993
BseNI ACTGG 4 cut(s) 20, 843, 2181, 2401
BseRI GAGGAG 3 cut(s) 167, 379, 517
BseXI GCAGC 6 cut(s) 661, 1207, 1600, 1946, 2066, 2182
BsgI GTGCAG 1 cut(s) 172
Bsh1236I CGCG 2 cut(s) 1302, 1499
Bsh1285I CGRYCG 1 cut(s) 923
BshFI GGCC 6 cut(s) 404, 741, 748, 911, 1815, 2030
BshNI GGYRCC 1 cut(s) 1974
BshVI ATCGAT 1 cut(s) 1581
BsiEI CGRYCG 1 cut(s) 923
BsiHKAI GWGCWC 4 cut(s) 8, 186, 207, 255
BsiHKCI CYCGRG 2 cut(s) 179, 2314
BsiSI CCGG 5 cut(s) 316, 421, 570, 1552, 2315
BslFI GGGAC 3 cut(s) 350, 659, 2033
BslI CCNNNNNNNGG 4 cut(s) 396, 505, 918, 1967
BsmAI GTCTC 4 cut(s) 245, 1168, 1264, 2165
BsmBI CGTCTC 1 cut(s) 1264
BsmFI GGGAC 3 cut(s) 350, 659, 2033
BsmI GAATGC 2 cut(s) 639, 1273
BsnI GGCC 6 cut(s) 404, 741, 748, 911, 1815, 2030
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 2 cut(s) 179, 2314
Bsp119I TTCGAA 2 cut(s) 893, 2335
Bsp1286I GDGCHC 5 cut(s) 8, 186, 207, 255, 2064
Bsp143I GATC 8 cut(s) 902, 997, 1102, 1138, 1578, 1774, 1795, 2187
BspACI CCGC 3 cut(s) 873, 1111, 2463
BspANI GGCC 6 cut(s) 404, 741, 748, 911, 1815, 2030
BspCNI CTCAG 3 cut(s) 492, 631, 994
BspDI ATCGAT 1 cut(s) 1581
BspFNI CGCG 2 cut(s) 1302, 1499
BspHI TCATGA 1 cut(s) 2227
BspLI GGNNCC 5 cut(s) 799, 1764, 1860, 1976, 2432
BspMAI CTGCAG 1 cut(s) 2084
BspPI GGATC 4 cut(s) 910, 992, 1146, 1782
BspQI GCTCTTC 1 cut(s) 882
BspT104I TTCGAA 2 cut(s) 893, 2335
BspT107I GGYRCC 1 cut(s) 1974
BspTNI GGTCTC 1 cut(s) 245
BsrBI CCGCTC 2 cut(s) 875, 1111
BsrDI GCAATG 4 cut(s) 773, 1017, 1776, 1890
BsrFI RCCGGY 2 cut(s) 420, 1551
BsrI ACTGG 4 cut(s) 20, 843, 2181, 2401
BssAI RCCGGY 2 cut(s) 420, 1551
BssECI CCNNGG 4 cut(s) 801, 1150, 2313, 2314
BssMI GATC 8 cut(s) 902, 997, 1102, 1138, 1578, 1774, 1795, 2187
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 801
Bst2UI CCWGG 5 cut(s) 700, 961, 1863, 2076, 2105
Bst4CI ACNGT 6 cut(s) 239, 952, 1626, 1721, 1784, 1873
Bst6I CTCTTC 2 cut(s) 287, 882
BstACI GRCGYC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 779
BstBI TTCGAA 2 cut(s) 893, 2335
BstC8I GCNNGC 7 cut(s) 780, 1693, 1767, 1813, 1897, 1989, 2283
BstDEI CTNAG 5 cut(s) 500, 591, 639, 1002, 1419
BstENI CCTNNNNNAGG 1 cut(s) 1965
BstF5I GGATG 6 cut(s) 732, 942, 1042, 1552, 1753, 2137
BstFNI CGCG 2 cut(s) 1302, 1499
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 8 cut(s) 905, 1000, 1105, 1141, 1581, 1777, 1798, 2190
BstMAI GTCTC 4 cut(s) 245, 1168, 1264, 2165
BstMBI GATC 8 cut(s) 902, 997, 1102, 1138, 1578, 1774, 1795, 2187
BstMCI CGRYCG 1 cut(s) 923
BstMWI GCNNNNNNNGC 7 cut(s) 285, 294, 680, 704, 779, 1082, 2422
BstNI CCWGG 5 cut(s) 700, 961, 1863, 2076, 2105
BstNSI RCATGY 3 cut(s) 889, 1085, 1559
BstPAI GACNNNNGTC 1 cut(s) 1256
BstSCI CCNGG 8 cut(s) 315, 698, 959, 1861, 2074, 2103, 2313, 2314
BstSFI CTRYAG 2 cut(s) 165, 2080
BstUI CGCG 2 cut(s) 1302, 1499
BstV1I GCAGC 6 cut(s) 661, 1207, 1600, 1946, 2066, 2182
BstV2I GAAGAC 2 cut(s) 1715, 1722
BstX2I RGATCY 3 cut(s) 902, 997, 1102
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 3 cut(s) 902, 997, 1102
Bsu15I ATCGAT 1 cut(s) 1581
Bsu36I CCTNAGG 2 cut(s) 500, 1002
BsuRI GGCC 6 cut(s) 404, 741, 748, 911, 1815, 2030
BsuTUI ATCGAT 1 cut(s) 1581
BtgZI GCGATG 2 cut(s) 578, 1802
BtrI CACGTC 1 cut(s) 1412
BtsCI GGATG 6 cut(s) 732, 942, 1042, 1552, 1753, 2137
BtsI GCAGTG 3 cut(s) 768, 912, 1518
BtsIMutI CAGTG 4 cut(s) 768, 912, 1518, 2174
Cac8I GCNNGC 7 cut(s) 780, 1693, 1767, 1813, 1897, 1989, 2283
CciI TCATGA 1 cut(s) 2227
CfoI GCGC 1 cut(s) 685
Cfr10I RCCGGY 2 cut(s) 420, 1551
Cfr13I GGNCC 2 cut(s) 747, 798
Cfr9I CCCGGG 1 cut(s) 2314
ClaI ATCGAT 1 cut(s) 1581
CseI GACGC 2 cut(s) 335, 1291
CsiI ACCWGGT 1 cut(s) 2103
Csp6I GTAC 5 cut(s) 1495, 1975, 2130, 2319, 2380
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviQI GTAC 5 cut(s) 1495, 1975, 2130, 2319, 2380
DdeI CTNAG 5 cut(s) 500, 591, 639, 1002, 1419
DpnI GATC 8 cut(s) 904, 999, 1104, 1140, 1580, 1776, 1797, 2189
DpnII GATC 8 cut(s) 902, 997, 1102, 1138, 1578, 1774, 1795, 2187
DraI TTTAAA 1 cut(s) 2097
EaeI YGGCCR 3 cut(s) 909, 1813, 2028
Eam1104I CTCTTC 2 cut(s) 287, 882
EarI CTCTTC 2 cut(s) 287, 882
Ecl136II GAGCTC 3 cut(s) 6, 184, 205
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 4 cut(s) 8, 186, 207, 2064
Eco31I GGTCTC 1 cut(s) 245
Eco32I GATATC 2 cut(s) 1185, 1686
Eco47I GGWCC 1 cut(s) 798
Eco53kI GAGCTC 3 cut(s) 6, 184, 205
Eco81I CCTNAGG 2 cut(s) 500, 1002
Eco88I CYCGRG 2 cut(s) 179, 2314
EcoICRI GAGCTC 3 cut(s) 6, 184, 205
EcoNI CCTNNNNNAGG 1 cut(s) 1965
EcoO109I RGGNCCY 1 cut(s) 798
EcoRI GAATTC 3 cut(s) 964, 1174, 1902
EcoRII CCWGG 5 cut(s) 698, 959, 1861, 2074, 2103
EcoRV GATATC 2 cut(s) 1185, 1686
EcoT14I CCWWGG 1 cut(s) 801
EcoT22I ATGCAT 2 cut(s) 616, 2427
EcoT38I GRGCYC 4 cut(s) 8, 186, 207, 2064
ErhI CCWWGG 1 cut(s) 801
Esp3I CGTCTC 1 cut(s) 1264
FalI AAGNNNNNCTT 2 cut(s) 1707, 1739
FaqI GGGAC 3 cut(s) 350, 659, 2033
FauI CCCGC 1 cut(s) 1104
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 6 cut(s) 675, 1221, 1614, 1935, 2080, 2196
FokI GGATG 6 cut(s) 739, 949, 1049, 1559, 1760, 2124
FriOI GRGCYC 4 cut(s) 8, 186, 207, 2064
Fsp4HI GCNGC 6 cut(s) 675, 1221, 1614, 1935, 2080, 2196
FspBI CTAG 3 cut(s) 87, 881, 2390
FspI TGCGCA 1 cut(s) 684
GlaI GCGC 1 cut(s) 684
GluI GCNGC 6 cut(s) 675, 1221, 1614, 1935, 2080, 2196
GsuI CTGGAG 2 cut(s) 2058, 2189
HaeIII GGCC 6 cut(s) 404, 741, 748, 911, 1815, 2030
HapII CCGG 5 cut(s) 316, 421, 570, 1552, 2315
HgaI GACGC 2 cut(s) 335, 1291
HhaI GCGC 1 cut(s) 685
Hin1I GRCGYC 1 cut(s) 327
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HindIII AAGCTT 1 cut(s) 1074
HinfI GANTC 8 cut(s) 517, 752, 820, 851, 940, 1358, 1426, 2298
HpaII CCGG 5 cut(s) 316, 421, 570, 1552, 2315
HphI GGTGA 5 cut(s) 57, 107, 817, 1384, 2369
Hpy166II GTNNAC 5 cut(s) 154, 862, 1365, 1516, 2110
Hpy188I TCNGA 2 cut(s) 531, 1154
Hpy8I GTNNAC 5 cut(s) 154, 862, 1365, 1516, 2110
Hpy99I CGWCG 3 cut(s) 329, 335, 350
HpyAV CCTTC 8 cut(s) 153, 421, 505, 731, 1034, 1738, 1961, 2394
HpyCH4III ACNGT 6 cut(s) 239, 952, 1626, 1721, 1784, 1873
HpyCH4IV ACGT 4 cut(s) 348, 1411, 1464, 1980
HpyF10VI GCNNNNNNNGC 7 cut(s) 285, 294, 680, 704, 779, 1082, 2422
HpyF3I CTNAG 5 cut(s) 500, 591, 639, 1002, 1419
HpySE526I ACGT 4 cut(s) 348, 1411, 1464, 1980
Hsp92I GRCGYC 1 cut(s) 327
HspAI GCGC 1 cut(s) 683
KpnI GGTACC 1 cut(s) 1978
Kzo9I GATC 8 cut(s) 902, 997, 1102, 1138, 1578, 1774, 1795, 2187
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 4 cut(s) 210, 1508, 1762, 2251
Lsp1109I GCAGC 6 cut(s) 661, 1207, 1600, 1946, 2066, 2182
LweI GCATC 6 cut(s) 601, 717, 1020, 1323, 1839, 2434
MabI ACCWGGT 1 cut(s) 2103
MaeI CTAG 3 cut(s) 87, 881, 2390
MaeII ACGT 4 cut(s) 348, 1411, 1464, 1980
MaeIII GTNAC 8 cut(s) 22, 766, 852, 1060, 1319, 1405, 1558, 2392
MalI GATC 8 cut(s) 904, 999, 1104, 1140, 1580, 1776, 1797, 2189
MbiI CCGCTC 2 cut(s) 875, 1111
MboI GATC 8 cut(s) 902, 997, 1102, 1138, 1578, 1774, 1795, 2187
MfeI CAATTG 2 cut(s) 303, 2255
MflI RGATCY 3 cut(s) 902, 997, 1102
MhlI GDGCHC 5 cut(s) 8, 186, 207, 255, 2064
MlsI TGGCCA 2 cut(s) 911, 2030
MluNI TGGCCA 2 cut(s) 911, 2030
MlyI GAGTC 2 cut(s) 860, 2292
Mox20I TGGCCA 2 cut(s) 911, 2030
Mph1103I ATGCAT 2 cut(s) 616, 2427
MroXI GAANNNNTTC 1 cut(s) 2455
MscI TGGCCA 2 cut(s) 911, 2030
MseI TTAA 4 cut(s) 369, 1241, 1316, 2096
MslI CAYNNNNRTG 7 cut(s) 194, 828, 1086, 1326, 1675, 1782, 1911
Msp20I TGGCCA 2 cut(s) 911, 2030
MspI CCGG 5 cut(s) 316, 421, 570, 1552, 2315
MspR9I CCNGG 8 cut(s) 317, 700, 961, 1863, 2076, 2105, 2315, 2316
MunI CAATTG 2 cut(s) 303, 2255
Mva1269I GAATGC 2 cut(s) 639, 1273
MvaI CCWGG 5 cut(s) 700, 961, 1863, 2076, 2105
MvnI CGCG 2 cut(s) 1302, 1499
MwoI GCNNNNNNNGC 7 cut(s) 285, 294, 680, 704, 779, 1082, 2422
NciI CCSGG 3 cut(s) 317, 2315, 2316
NdeII GATC 8 cut(s) 902, 997, 1102, 1138, 1578, 1774, 1795, 2187
NlaIV GGNNCC 5 cut(s) 799, 1764, 1860, 1976, 2432
NmuCI GTSAC 5 cut(s) 22, 766, 852, 1319, 1558
NsbI TGCGCA 1 cut(s) 684
NsiI ATGCAT 2 cut(s) 616, 2427
NspI RCATGY 3 cut(s) 889, 1085, 1559
NspV TTCGAA 2 cut(s) 893, 2335
OliI CACNNNNGTG 2 cut(s) 1326, 1782
PaeR7I CTCGAG 1 cut(s) 179
PagI TCATGA 1 cut(s) 2227
PciI ACATGT 1 cut(s) 885
PciSI GCTCTTC 1 cut(s) 882
PcsI WCGNNNNNNNCGW 1 cut(s) 1813
PctI GAATGC 2 cut(s) 639, 1273
PdmI GAANNNNTTC 1 cut(s) 2455
PfeI GAWTC 6 cut(s) 517, 752, 820, 940, 1358, 1426
PflFI GACNNNGTC 1 cut(s) 329
PfoI TCCNGGA 1 cut(s) 959
PkrI GCNGC 6 cut(s) 676, 1222, 1615, 1936, 2081, 2197
PleI GAGTC 2 cut(s) 859, 2292
PpsI GAGTC 2 cut(s) 859, 2292
PpuMI RGGWCCY 1 cut(s) 798
PscI ACATGT 1 cut(s) 885
PshAI GACNNNNGTC 1 cut(s) 1256
PsiI TTATAA 2 cut(s) 722, 836
Psp124BI GAGCTC 3 cut(s) 8, 186, 207
Psp1406I AACGTT 1 cut(s) 1464
Psp5II RGGWCCY 1 cut(s) 798
Psp6I CCWGG 5 cut(s) 698, 959, 1861, 2074, 2103
PspGI CCWGG 5 cut(s) 698, 959, 1861, 2074, 2103
PspN4I GGNNCC 5 cut(s) 799, 1764, 1860, 1976, 2432
PspPI GGNCC 2 cut(s) 747, 798
PspPPI RGGWCCY 1 cut(s) 798
PspXI VCTCGAGB 1 cut(s) 179
PstI CTGCAG 1 cut(s) 2084
PsuI RGATCY 3 cut(s) 902, 997, 1102
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 5 cut(s) 1496, 1976, 2131, 2320, 2381
RsaNI GTAC 5 cut(s) 1495, 1975, 2130, 2319, 2380
RseI CAYNNNNRTG 7 cut(s) 194, 828, 1086, 1326, 1675, 1782, 1911
SacI GAGCTC 3 cut(s) 8, 186, 207
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 4 cut(s) 369, 1241, 1316, 2096
SatI GCNGC 6 cut(s) 675, 1221, 1614, 1935, 2080, 2196
Sau3AI GATC 8 cut(s) 902, 997, 1102, 1138, 1578, 1774, 1795, 2187
Sau96I GGNCC 2 cut(s) 747, 798
SchI GAGTC 2 cut(s) 860, 2292
ScrFI CCNGG 8 cut(s) 317, 700, 961, 1863, 2076, 2105, 2315, 2316
SduI GDGCHC 5 cut(s) 8, 186, 207, 255, 2064
SexAI ACCWGGT 1 cut(s) 2103
SfaNI GCATC 6 cut(s) 601, 717, 1020, 1323, 1839, 2434
SfcI CTRYAG 2 cut(s) 165, 2080
Sfr274I CTCGAG 1 cut(s) 179
SfuI TTCGAA 2 cut(s) 893, 2335
SinI GGWCC 1 cut(s) 798
SlaI CTCGAG 1 cut(s) 179
SmaI CCCGGG 1 cut(s) 2316
SmiMI CAYNNNNRTG 7 cut(s) 194, 828, 1086, 1326, 1675, 1782, 1911
SmlI CTYRAG 4 cut(s) 179, 473, 1106, 2063
SmoI CTYRAG 4 cut(s) 179, 473, 1106, 2063
SpeI ACTAGT 1 cut(s) 2389
SsiI CCGC 3 cut(s) 873, 1111, 2463
SspI AATATT 1 cut(s) 1947
SspMI CTAG 3 cut(s) 87, 881, 2390
SstI GAGCTC 3 cut(s) 8, 186, 207
StyD4I CCNGG 8 cut(s) 315, 698, 959, 1861, 2074, 2103, 2313, 2314
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 6 cut(s) 239, 952, 1626, 1721, 1784, 1873
TaiI ACGT 4 cut(s) 351, 1414, 1467, 1983
TaqII GACCGA 1 cut(s) 909
TatI WGTACW 2 cut(s) 2129, 2379
TfiI GAWTC 6 cut(s) 517, 752, 820, 940, 1358, 1426
Tru1I TTAA 4 cut(s) 369, 1241, 1316, 2096
Tru9I TTAA 4 cut(s) 369, 1241, 1316, 2096
TscAI CASTG 4 cut(s) 775, 919, 1525, 2181
TseFI GTSAC 5 cut(s) 22, 766, 852, 1319, 1558
TseI GCWGC 6 cut(s) 674, 1220, 1613, 1934, 2079, 2195
Tsp45I GTSAC 5 cut(s) 22, 766, 852, 1319, 1558
TspMI CCCGGG 1 cut(s) 2314
TspRI CASTG 4 cut(s) 775, 919, 1525, 2181
Tth111I GACNNNGTC 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 798
XagI CCTNNNNNAGG 1 cut(s) 1965
XapI RAATTY 5 cut(s) 580, 964, 1174, 1902, 2218
XbaI TCTAGA 1 cut(s) 880
XceI RCATGY 3 cut(s) 889, 1085, 1559
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XhoI CTCGAG 1 cut(s) 179
XmaI CCCGGG 1 cut(s) 2314
XmiI GTMKAC 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 2455
XspI CTAG 3 cut(s) 87, 881, 2390
Zsp2I ATGCAT 2 cut(s) 616, 2427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.