Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006184.1

Orthogroup ID

OG0015494

Physical Location & Seq

Genomic Coordinates Forward (+)

59168 .. 61853

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006184.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgagctcacagctcttgccagtcacacctctgctctccataaccaacaccaaaacaccaccaccaatatcaacatcaacatccacatttcaccagctttcccaaagaagtgaaagaacccacattccttctcatgtctacaagcaccctacagccatactcctcgagctctgcacttccatgagagaactccaccaaatcttccccctcataatcaagaacggtctctacaacgagcactacttccagaccaagctcgtcagcctcttctgcaaatacggcagcccaattgaagcccaccgggttttcgacgccgtcggggacaaactcgacgttttctatcacactctgctcaaagggtacgccaagaactcctctttaggggatgccatttccttcttttgccgattgaagcatgatggggttgcccctgttgtgtacaattttacttacttgctcaaggcgtgtggcgataatgctgacctgaggagggggaaggagatacatggctctctgattaccaatggctttgcgactaatctgtttgcgatgaccggagttgtgaatttgtatgctaagtgtaggcagattgatgatgcatataagatgttcgatagaatgcctgagagggacttggtttcttggaacactatcgttgctgcttatgcgcaaaatgggttggccaggagagctttggagttggttataaggatgcaggaggaaggccagaggcctgattccatcacattggtcactgcattgcctgctgttgcagattttgggtactccgtcgtccggcctttgttcaacacagcaccggtggcgttcgacgagcccaagctttttcttcttccctctggcggtgatggtgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

291

Amino Acids

32.44

Weight (kDa)

8.51

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11290
fragaria_vesca	FvH4_7g04350
malus_domestica	MD07G1040900.v1.1
prunus_persica	Prupe.2G049000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0329341
rosa_laevigata	RLG00000029901
rosa_multiflora	Rmu_co8161036.1_g000001 Rmu_sc0006184.1_g000011 Rmu_sc0039010.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321210
rosa_rugosa	Rorug01G0078700
rosa_samantha	Rh1AG097000 Rh1BG077600 Rh1DG100500
rosa_wichuraiana	Rw1G007520 Rw1G007580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
Acc16I	TGCGCA	1 cut(s)	669
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	1 cut(s)	861
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	1 cut(s)	565
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	3 cut(s)	362, 440, 785
AfiI	CCNNNNNNNGG	4 cut(s)	381, 490, 795, 860
AgeI	ACCGGT	1 cut(s)	817
AgsI	TTSAA	3 cut(s)	293, 412, 808
AjnI	CCWGG	1 cut(s)	683
AloI	GAACNNNNNNTCC	2 cut(s)	109, 141
AluBI	AGCT	7 cut(s)	6, 13, 97, 169, 256, 692, 841
AluI	AGCT	7 cut(s)	6, 13, 97, 169, 256, 692, 841
Alw21I	GWGCWC	3 cut(s)	8, 171, 240
Alw26I	GTCTC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	4 cut(s)	681, 724, 731, 797
ApeKI	GCWGC	2 cut(s)	282, 659
ApoI	RAATTY	1 cut(s)	565
AsiGI	ACCGGT	1 cut(s)	817
AspLEI	GCGC	1 cut(s)	670
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	83, 875
AvaI	CYCGRG	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	485
BalI	TGGCCA	1 cut(s)	683
BanII	GRGCYC	3 cut(s)	8, 171, 837
Bbv12I	GWGCWC	3 cut(s)	8, 171, 240
BbvI	GCAGC	2 cut(s)	294, 646
BccI	CCATC	3 cut(s)	413, 749, 860
BceAI	ACGGC	2 cut(s)	295, 299
BciT130I	CCWGG	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	2 cut(s)	283, 660
BlsI	GCNGC	2 cut(s)	284, 661
Bme1390I	CCNGG	2 cut(s)	302, 685
BmeT110I	CYCGRG	1 cut(s)	164
BmrFI	CCNGG	2 cut(s)	302, 685
BmsI	GCATC	3 cut(s)	376, 586, 702
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	230
BsaWI	WCCGGW	2 cut(s)	554, 817
Bsc4I	CCNNNNNNNGG	4 cut(s)	381, 490, 795, 860
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	1 cut(s)	20
Bse21I	CCTNAGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	758
BseBI	CCWGG	1 cut(s)	685
BseGI	GGATG	3 cut(s)	80, 391, 717
BseLI	CCNNNNNNNGG	4 cut(s)	381, 490, 795, 860
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	2 cut(s)	476, 615
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	3 cut(s)	152, 364, 502
BseXI	GCAGC	2 cut(s)	294, 646
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	4 cut(s)	683, 726, 733, 799
BshTI	ACCGGT	1 cut(s)	817
BsiHKAI	GWGCWC	3 cut(s)	8, 171, 240
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	4 cut(s)	301, 555, 796, 818
BslFI	GGGAC	2 cut(s)	335, 644
BslI	CCNNNNNNNGG	4 cut(s)	381, 490, 795, 860
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	2 cut(s)	335, 644
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	4 cut(s)	683, 726, 733, 799
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	4 cut(s)	8, 171, 240, 837
Bsp1407I	TGTACA	1 cut(s)	438
BspACI	CCGC	1 cut(s)	861
BspANI	GGCC	4 cut(s)	683, 726, 733, 799
BspCNI	CTCAG	2 cut(s)	477, 616
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	758
BsrFI	RCCGGY	1 cut(s)	817
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	817
BssNI	GRCGYC	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	3 cut(s)	485, 576, 624
BstF5I	GGATG	3 cut(s)	80, 391, 717
BstHHI	GCGC	1 cut(s)	670
BstMAI	GTCTC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	6 cut(s)	270, 279, 665, 689, 764, 821
BstNI	CCWGG	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	300, 683
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	294, 646
BstXI	CCANNNNNNTGG	1 cut(s)	748
Bsu36I	CCTNAGG	1 cut(s)	485
BsuRI	GGCC	4 cut(s)	683, 726, 733, 799
BtgZI	GCGATG	1 cut(s)	563
BtsCI	GGATG	3 cut(s)	80, 391, 717
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	1 cut(s)	753
Cac8I	GCNNGC	1 cut(s)	765
CfoI	GCGC	1 cut(s)	670
Cfr10I	RCCGGY	1 cut(s)	817
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	3 cut(s)	361, 439, 784
CspAI	ACCGGT	1 cut(s)	817
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	5 cut(s)	134, 181, 416, 506, 873
CviQI	GTAC	3 cut(s)	361, 439, 784
DdeI	CTNAG	3 cut(s)	485, 576, 624
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	2 cut(s)	6, 169
Eco147I	AGGCCT	1 cut(s)	733
Eco24I	GRGCYC	3 cut(s)	8, 171, 837
Eco31I	GGTCTC	1 cut(s)	230
Eco53kI	GAGCTC	2 cut(s)	6, 169
Eco81I	CCTNAGG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	2 cut(s)	6, 169
EcoRII	CCWGG	1 cut(s)	683
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	3 cut(s)	8, 171, 837
FaeI	CATG	5 cut(s)	137, 184, 419, 509, 876
FaqI	GGGAC	2 cut(s)	335, 644
FatI	CATG	5 cut(s)	133, 180, 415, 505, 872
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	283, 660
FokI	GGATG	3 cut(s)	67, 398, 724
FriOI	GRGCYC	3 cut(s)	8, 171, 837
Fsp4HI	GCNGC	2 cut(s)	283, 660
FspI	TGCGCA	1 cut(s)	669
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	2 cut(s)	283, 660
HaeIII	GGCC	4 cut(s)	683, 726, 733, 799
HapII	CCGG	4 cut(s)	301, 555, 796, 818
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	5 cut(s)	137, 184, 419, 509, 876
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	1 cut(s)	737
HpaII	CCGG	4 cut(s)	301, 555, 796, 818
HphI	GGTGA	2 cut(s)	83, 875
Hpy166II	GTNNAC	2 cut(s)	139, 439
Hpy188I	TCNGA	1 cut(s)	516
Hpy188III	TCNNGA	2 cut(s)	217, 247
Hpy8I	GTNNAC	2 cut(s)	139, 439
Hpy99I	CGWCG	5 cut(s)	314, 320, 335, 794, 833
HpyAV	CCTTC	4 cut(s)	138, 406, 490, 716
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	7 cut(s)	174, 273, 599, 715, 758, 773, 872
HpyF10VI	GCNNNNNNNGC	6 cut(s)	270, 279, 665, 689, 764, 821
HpyF3I	CTNAG	3 cut(s)	485, 576, 624
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	137, 184, 419, 509, 876
HspAI	GCGC	1 cut(s)	668
Lsp1109I	GCAGC	2 cut(s)	294, 646
LweI	GCATC	3 cut(s)	376, 586, 702
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	22, 751
MboII	GAAGA	4 cut(s)	193, 259, 839, 842
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	4 cut(s)	8, 171, 240, 837
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	3 cut(s)	288, 442, 565
MluNI	TGGCCA	1 cut(s)	683
Mox20I	TGGCCA	1 cut(s)	683
Mph1103I	ATGCAT	1 cut(s)	601
MscI	TGGCCA	1 cut(s)	683
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	683
MspI	CCGG	4 cut(s)	301, 555, 796, 818
MspR9I	CCNGG	2 cut(s)	302, 685
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	6 cut(s)	270, 279, 665, 689, 764, 821
NciI	CCSGG	1 cut(s)	302
NlaIII	CATG	5 cut(s)	137, 184, 419, 509, 876
NmuCI	GTSAC	2 cut(s)	22, 751
NsbI	TGCGCA	1 cut(s)	669
NsiI	ATGCAT	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	164
PceI	AGGCCT	1 cut(s)	733
PctI	GAATGC	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	737
PflFI	GACNNNGTC	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	817
PkrI	GCNGC	2 cut(s)	284, 661
PsiI	TTATAA	1 cut(s)	707
Psp124BI	GAGCTC	2 cut(s)	8, 171
Psp6I	CCWGG	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	683
PspXI	VCTCGAGB	1 cut(s)	164
PsrI	GAACNNNNNNTAC	2 cut(s)	212, 244
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	3 cut(s)	362, 440, 785
RsaNI	GTAC	3 cut(s)	361, 439, 784
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	2 cut(s)	8, 171
SatI	GCNGC	2 cut(s)	283, 660
ScrFI	CCNGG	2 cut(s)	302, 685
SduI	GDGCHC	4 cut(s)	8, 171, 240, 837
SfaNI	GCATC	3 cut(s)	376, 586, 702
SfcI	CTRYAG	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	164
SgrAI	CRCCGGYG	1 cut(s)	817
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	164, 458
SmoI	CTYRAG	2 cut(s)	164, 458
Sse9I	AATT	3 cut(s)	288, 442, 565
SseBI	AGGCCT	1 cut(s)	733
SsiI	CCGC	1 cut(s)	861
SstI	GAGCTC	2 cut(s)	8, 171
StuI	AGGCCT	1 cut(s)	733
StyD4I	CCNGG	2 cut(s)	300, 683
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	5 cut(s)	165, 309, 330, 612, 828
TasI	AATT	3 cut(s)	288, 442, 565
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	1 cut(s)	737
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	2 cut(s)	22, 751
TseI	GCWGC	2 cut(s)	282, 659
Tsp45I	GTSAC	2 cut(s)	22, 751
TspGWI	ACGGA	1 cut(s)	778
TspRI	CASTG	1 cut(s)	760
Tth111I	GACNNNGTC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	691
XhoI	CTCGAG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.